RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 MAPK8IP3Q9UPT6 1336 aa10.74□□□□□ -0.69
VPS53-214ENST00000572607 BRCA1P38398 1863 aaKnown RBP10.74□□□□□ -0.69
VPS53-214ENST00000572607 SCN11AQ9UI33 1791 aa10.73□□□□□ -0.69
VPS53-214ENST00000572607 HSPA6P17066 643 aa10.73□□□□□ -0.69
VPS53-214ENST00000572607 SLC39A6Q13433 755 aa10.73□□□□□ -0.69
VPS53-214ENST00000572607 SMIM5Q71RC9 77 aa10.73□□□□□ -0.69
VPS53-214ENST00000572607 G3V3G9 751 aa10.72□□□□□ -0.69
VPS53-214ENST00000572607 KIF3CO14782 793 aa10.72□□□□□ -0.69
VPS53-214ENST00000572607 RPS6KA4O75676 772 aa10.72□□□□□ -0.69
VPS53-214ENST00000572607 RFC4P35249 363 aa10.72□□□□□ -0.69
VPS53-214ENST00000572607 VSIG10Q8N0Z9 540 aa10.72□□□□□ -0.69
VPS53-214ENST00000572607 IL17REQ8NFR9 667 aa10.72□□□□□ -0.69
VPS53-214ENST00000572607 CD2APQ9Y5K6 639 aa10.72□□□□□ -0.69
VPS53-214ENST00000572607 ZNF831Q5JPB2 1677 aa10.72□□□□□ -0.69
VPS53-214ENST00000572607 N4BP2Q86UW6 1770 aaPredicted RBP10.72□□□□□ -0.69
VPS53-214ENST00000572607 BTBD11A6QL63 1104 aa10.71□□□□□ -0.69
VPS53-214ENST00000572607 HTATSF1O43719 755 aaKnown RBP10.71□□□□□ -0.69
VPS53-214ENST00000572607 CRKLP46109 303 aaKnown RBP10.71□□□□□ -0.69
VPS53-214ENST00000572607 DNAJC10Q8IXB1 793 aa10.71□□□□□ -0.69
VPS53-214ENST00000572607 ADAMTS7Q9UKP4 1686 aa10.7□□□□□ -0.7
VPS53-214ENST00000572607 CEMIPQ8WUJ3 1361 aa10.7□□□□□ -0.7
VPS53-214ENST00000572607 STARD3NLO95772 234 aa10.7□□□□□ -0.7
VPS53-214ENST00000572607 WDR43Q15061 677 aaKnown RBP eCLIP10.7□□□□□ -0.7
VPS53-214ENST00000572607 ZNF790Q6PG37 636 aa10.7□□□□□ -0.7
VPS53-214ENST00000572607 MCM10Q7L590 875 aa10.7□□□□□ -0.7
VPS53-214ENST00000572607 NPM2Q86SE8 214 aaKnown RBP10.7□□□□□ -0.7
VPS53-214ENST00000572607 NLGN1Q8N2Q7 840 aa10.7□□□□□ -0.7
VPS53-214ENST00000572607 ARHGEF1Q92888 912 aaKnown RBP10.7□□□□□ -0.7
VPS53-214ENST00000572607 FMNL2Q96PY5 1086 aa10.7□□□□□ -0.7
VPS53-214ENST00000572607 TEX13AQ9BXU3 409 aaPredicted RBP10.7□□□□□ -0.7
VPS53-214ENST00000572607 CCDC87Q9NVE4 849 aa10.7□□□□□ -0.7
VPS53-214ENST00000572607 EFCAB3Q8N7B9 438 aa10.69□□□□□ -0.7
VPS53-214ENST00000572607 GPBP1L1Q9HC44 474 aaPredicted RBP10.69□□□□□ -0.7
VPS53-214ENST00000572607 KCPQ6ZWJ8 1503 aa10.68□□□□□ -0.7
VPS53-214ENST00000572607 HEG1Q9ULI3 1381 aa10.68□□□□□ -0.7
VPS53-214ENST00000572607 COL5A3P25940 1745 aaPredicted RBP10.68□□□□□ -0.7
VPS53-214ENST00000572607 WDR90Q96KV7 1748 aa10.68□□□□□ -0.7
VPS53-214ENST00000572607 ZNF316A6NFI3 1004 aaPredicted RBP10.68□□□□□ -0.7
VPS53-214ENST00000572607 ZPR1O75312 459 aa10.68□□□□□ -0.7
VPS53-214ENST00000572607 MMP10P09238 476 aa10.68□□□□□ -0.7
VPS53-214ENST00000572607 CYP19A1P11511 503 aaPredicted RBP10.68□□□□□ -0.7
VPS53-214ENST00000572607 NFE2L2Q16236 605 aa10.68□□□□□ -0.7
VPS53-214ENST00000572607 DNAJC5GQ8N7S2 189 aa10.68□□□□□ -0.7
VPS53-214ENST00000572607 ZNF526Q8TF50 670 aaPredicted RBP10.68□□□□□ -0.7
VPS53-214ENST00000572607 ZNF496Q96IT1 587 aaPredicted RBP10.68□□□□□ -0.7
VPS53-214ENST00000572607 PRKRIP1Q9H875 184 aaPredicted RBP10.68□□□□□ -0.7
VPS53-214ENST00000572607 WWC3Q9ULE0 1092 aa10.68□□□□□ -0.7
VPS53-214ENST00000572607 PXDNLA1KZ92 1463 aa10.68□□□□□ -0.7
VPS53-214ENST00000572607 USP42Q9H9J4 1324 aaKnown RBP10.67□□□□□ -0.7
VPS53-214ENST00000572607 A0A087WZG4 1122 aa10.67□□□□□ -0.7
VPS53-214ENST00000572607 EMP3P54852 163 aa10.67□□□□□ -0.7
VPS53-214ENST00000572607 LMOD3Q0VAK6 560 aa10.67□□□□□ -0.7
VPS53-214ENST00000572607 DCTN1Q14203 1278 aa10.67□□□□□ -0.7
VPS53-214ENST00000572607 INTS5Q6P9B9 1019 aaKnown RBP10.67□□□□□ -0.7
VPS53-214ENST00000572607 PNISRQ8TF01 805 aaKnown RBP10.67□□□□□ -0.7
VPS53-214ENST00000572607 PLEKHF1Q96S99 279 aa10.67□□□□□ -0.7
VPS53-214ENST00000572607 PARP3Q9Y6F1 533 aa10.67□□□□□ -0.7
VPS53-214ENST00000572607 C4AP0C0L4 1744 aa10.67□□□□□ -0.7
VPS53-214ENST00000572607 TJP1Q07157 1748 aa10.67□□□□□ -0.7
VPS53-214ENST00000572607 MYH14Q7Z406 1995 aaKnown RBP10.66□□□□□ -0.7
VPS53-214ENST00000572607 SOS1Q07889 1333 aaPredicted RBP10.66□□□□□ -0.7
VPS53-214ENST00000572607 ARFGEF1Q9Y6D6 1849 aa10.66□□□□□ -0.7
VPS53-214ENST00000572607 PCNTO95613 3336 aa10.66□□□□□ -0.7
VPS53-214ENST00000572607 GYS1P13807 737 aa10.66□□□□□ -0.7
VPS53-214ENST00000572607 CANXP27824 592 aaKnown RBP10.66□□□□□ -0.7
VPS53-214ENST00000572607 TAF7Q15545 349 aaPredicted RBP10.66□□□□□ -0.7
VPS53-214ENST00000572607 SPNS2Q8IVW8 549 aa10.66□□□□□ -0.7
VPS53-214ENST00000572607 ZBTB1Q9Y2K1 713 aa10.66□□□□□ -0.7
VPS53-214ENST00000572607 COL15A1P39059 1388 aa10.65□□□□□ -0.7
VPS53-214ENST00000572607 SRP68Q9UHB9 627 aaKnown RBP10.65□□□□□ -0.7
VPS53-214ENST00000572607 ZNF330Q9Y3S2 320 aaPredicted RBP10.65□□□□□ -0.7
VPS53-214ENST00000572607 SBF1O95248 1867 aa10.64□□□□□ -0.71
VPS53-214ENST00000572607 RIOK3O14730 519 aaKnown RBP10.64□□□□□ -0.71
VPS53-214ENST00000572607 SNRPA1P09661 255 aaKnown RBP10.64□□□□□ -0.71
VPS53-214ENST00000572607 RIPK4P57078 832 aa10.64□□□□□ -0.71
VPS53-214ENST00000572607 USPL1Q5W0Q7 1092 aa10.64□□□□□ -0.71
VPS53-214ENST00000572607 RUNDC1Q96C34 613 aa10.64□□□□□ -0.71
VPS53-214ENST00000572607 NARFQ9UHQ1 456 aa10.64□□□□□ -0.71
VPS53-214ENST00000572607 UBR2Q8IWV8 1755 aa10.63□□□□□ -0.71
VPS53-214ENST00000572607 ANP32CO43423 234 aa10.63□□□□□ -0.71
VPS53-214ENST00000572607 KCNQ3O43525 872 aa10.63□□□□□ -0.71
VPS53-214ENST00000572607 HOXB3P14651 431 aaPredicted RBP10.63□□□□□ -0.71
VPS53-214ENST00000572607 IL6STP40189 918 aaPredicted RBP10.63□□□□□ -0.71
VPS53-214ENST00000572607 MMRN1Q13201 1228 aa10.63□□□□□ -0.71
VPS53-214ENST00000572607 CCDC146Q8IYE0 955 aa10.63□□□□□ -0.71
VPS53-214ENST00000572607 C10orf71Q711Q0 1435 aa10.63□□□□□ -0.71
VPS53-214ENST00000572607 VIRMAQ69YN4 1812 aaKnown RBP10.63□□□□□ -0.71
VPS53-214ENST00000572607 TMPOP42166 694 aaKnown RBP10.62□□□□□ -0.71
VPS53-214ENST00000572607 TGFB2P61812 414 aa10.62□□□□□ -0.71
VPS53-214ENST00000572607 HS3ST6Q96QI5 342 aa10.62□□□□□ -0.71
VPS53-214ENST00000572607 SIPA1L3O60292 1781 aaPredicted RBP10.62□□□□□ -0.71
VPS53-214ENST00000572607 POTEB3A0JP26 581 aa10.61□□□□□ -0.71
VPS53-214ENST00000572607 FAM205CA6NFA0 338 aa10.61□□□□□ -0.71
VPS53-214ENST00000572607 EIF5P55010 431 aaKnown RBP10.61□□□□□ -0.71
VPS53-214ENST00000572607 NEUROD2Q15784 382 aa10.61□□□□□ -0.71
VPS53-214ENST00000572607 POTEBQ6S5H4 581 aa10.61□□□□□ -0.71
VPS53-214ENST00000572607 RNF25Q96BH1 459 aaPredicted RBP10.61□□□□□ -0.71
VPS53-214ENST00000572607 THUMPD2Q9BTF0 503 aaKnown RBP10.61□□□□□ -0.71
VPS53-214ENST00000572607 MIS18AQ9NYP9 233 aa10.61□□□□□ -0.71
VPS53-214ENST00000572607 TSPYL4Q9UJ04 414 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms