RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 SRGNP10124 158 aa25.83■■□□□ 1.73
NUP88-203ENST00000572019 PRPF40BQ6NWY9 871 aaKnown RBP25.83■■□□□ 1.73
NUP88-203ENST00000572019 SETDB2Q96T68 719 aa25.83■■□□□ 1.73
NUP88-203ENST00000572019 PRKAR2BP31323 418 aa25.82■■□□□ 1.72
NUP88-203ENST00000572019 DZIP3Q86Y13 1208 aaKnown RBP25.82■■□□□ 1.72
NUP88-203ENST00000572019 TNS4Q8IZW8 715 aa25.82■■□□□ 1.72
NUP88-203ENST00000572019 RSPH6AQ9H0K4 717 aa25.82■■□□□ 1.72
NUP88-203ENST00000572019 TAOK3Q9H2K8 898 aa25.82■■□□□ 1.72
NUP88-203ENST00000572019 LTBP3Q9NS15 1303 aa25.82■■□□□ 1.72
NUP88-203ENST00000572019 BTBD11A6QL63 1104 aa25.81■■□□□ 1.72
NUP88-203ENST00000572019 DPY19L2Q6NUT2 758 aa25.81■■□□□ 1.72
NUP88-203ENST00000572019 STYK1Q6J9G0 422 aa25.8■■□□□ 1.72
NUP88-203ENST00000572019 PDZRN3Q9UPQ7 1066 aa25.8■■□□□ 1.72
NUP88-203ENST00000572019 OLFM4Q6UX06 510 aa25.79■■□□□ 1.72
NUP88-203ENST00000572019 C7orf43Q8WVR3 580 aa25.78■■□□□ 1.72
NUP88-203ENST00000572019 CNKSR1Q969H4 720 aa25.78■■□□□ 1.72
NUP88-203ENST00000572019 ST5P78524 1137 aa25.77■■□□□ 1.72
NUP88-203ENST00000572019 MCM10Q7L590 875 aa25.77■■□□□ 1.72
NUP88-203ENST00000572019 MASTLQ96GX5 879 aa25.77■■□□□ 1.72
NUP88-203ENST00000572019 NBPF26B4DH59 902 aa25.76■■□□□ 1.71
NUP88-203ENST00000572019 NPHP1O15259 732 aa25.76■■□□□ 1.71
NUP88-203ENST00000572019 DCTN1Q14203 1278 aa25.76■■□□□ 1.71
NUP88-203ENST00000572019 CHADLQ6NUI6 762 aa25.76■■□□□ 1.71
NUP88-203ENST00000572019 NBPF10Q6P3W6 841 aaKnown RBP25.76■■□□□ 1.71
NUP88-203ENST00000572019 NBPF15Q8N660 670 aa25.76■■□□□ 1.71
NUP88-203ENST00000572019 MKRN1Q9UHC7 482 aaKnown RBP25.76■■□□□ 1.71
NUP88-203ENST00000572019 SCN4AP35499 1836 aa25.76■■□□□ 1.71
NUP88-203ENST00000572019 ZNF541Q9H0D2 1346 aa25.73■■□□□ 1.71
NUP88-203ENST00000572019 NBPF5PQ86XG9 351 aaPredicted RBP25.73■■□□□ 1.71
NUP88-203ENST00000572019 DLG5Q8TDM6 1919 aa25.73■■□□□ 1.71
NUP88-203ENST00000572019 NPM2Q86SE8 214 aaKnown RBP25.72■■□□□ 1.71
NUP88-203ENST00000572019 CREBZFQ9NS37 354 aa25.72■■□□□ 1.71
NUP88-203ENST00000572019 LAMB4A4D0S4 1761 aa25.72■■□□□ 1.71
NUP88-203ENST00000572019 ADAMTSL1Q8N6G6 1762 aa25.72■■□□□ 1.71
NUP88-203ENST00000572019 FAM177BA6PVY3 158 aa25.71■■□□□ 1.71
NUP88-203ENST00000572019 ZNF277Q9NRM2 450 aaPredicted RBP25.71■■□□□ 1.71
NUP88-203ENST00000572019 PASKQ96RG2 1323 aa25.7■■□□□ 1.71
NUP88-203ENST00000572019 SNRPA1P09661 255 aaKnown RBP25.7■■□□□ 1.7
NUP88-203ENST00000572019 HLFQ16534 295 aa25.7■■□□□ 1.7
NUP88-203ENST00000572019 KLRG2A4D1S0 409 aaPredicted RBP25.69■■□□□ 1.7
NUP88-203ENST00000572019 CLEC4GQ6UXB4 293 aa25.69■■□□□ 1.7
NUP88-203ENST00000572019 TAF1DQ9H5J8 278 aaPredicted RBP25.69■■□□□ 1.7
NUP88-203ENST00000572019 NIP7Q9Y221 180 aaKnown RBP eCLIP25.69■■□□□ 1.7
NUP88-203ENST00000572019 NUP98P52948 1817 aa25.69■■□□□ 1.7
NUP88-203ENST00000572019 NPR1P16066 1061 aa25.68■■□□□ 1.7
NUP88-203ENST00000572019 CCDC93Q567U6 631 aa25.68■■□□□ 1.7
NUP88-203ENST00000572019 L3MBTL3Q96JM7 780 aaPredicted RBP25.68■■□□□ 1.7
NUP88-203ENST00000572019 MIS18AQ9NYP9 233 aa25.68■■□□□ 1.7
NUP88-203ENST00000572019 U2AF1L5P0DN76 240 aaPredicted RBP25.67■■□□□ 1.7
NUP88-203ENST00000572019 U2AF1Q01081 240 aaKnown RBP eCLIP25.67■■□□□ 1.7
NUP88-203ENST00000572019 SOGA3Q5TF21 947 aa25.67■■□□□ 1.7
NUP88-203ENST00000572019 SLC51AQ86UW1 340 aa25.67■■□□□ 1.7
NUP88-203ENST00000572019 COL4A5P29400 1685 aa25.67■■□□□ 1.7
NUP88-203ENST00000572019 SNED1Q8TER0 1413 aa25.66■■□□□ 1.7
NUP88-203ENST00000572019 PPP2R1AP30153 589 aa25.66■■□□□ 1.7
NUP88-203ENST00000572019 KDM3BQ7LBC6 1761 aa25.66■■□□□ 1.7
NUP88-203ENST00000572019 CNTNAP1P78357 1384 aa25.66■■□□□ 1.7
NUP88-203ENST00000572019 ABCC12Q96J65 1359 aa25.66■■□□□ 1.7
NUP88-203ENST00000572019 FKBP4Q02790 459 aaKnown RBP eCLIP25.65■■□□□ 1.7
NUP88-203ENST00000572019 LDHDQ86WU2 507 aa25.65■■□□□ 1.7
NUP88-203ENST00000572019 CFAP53Q96M91 514 aa25.65■■□□□ 1.7
NUP88-203ENST00000572019 ZNF652Q9Y2D9 606 aa25.65■■□□□ 1.7
NUP88-203ENST00000572019 FOXN1O15353 648 aa25.64■■□□□ 1.7
NUP88-203ENST00000572019 ITGBL1O95965 494 aaPredicted RBP25.64■■□□□ 1.7
NUP88-203ENST00000572019 LTBP1Q14766 1721 aa25.63■■□□□ 1.69
NUP88-203ENST00000572019 RTF1Q92541 710 aaKnown RBP25.63■■□□□ 1.69
NUP88-203ENST00000572019 IQCA1LA6NCM1 817 aa25.62■■□□□ 1.69
NUP88-203ENST00000572019 EAPPQ56P03 285 aaPredicted RBP25.62■■□□□ 1.69
NUP88-203ENST00000572019 TPTE2Q6XPS3 522 aa25.62■■□□□ 1.69
NUP88-203ENST00000572019 RNF123Q5XPI4 1314 aa25.62■■□□□ 1.69
NUP88-203ENST00000572019 NUTM1Q86Y26 1132 aa25.61■■□□□ 1.69
NUP88-203ENST00000572019 SYNE4Q8N205 404 aa25.6■■□□□ 1.69
NUP88-203ENST00000572019 NGEFQ8N5V2 710 aa25.6■■□□□ 1.69
NUP88-203ENST00000572019 NUDCQ9Y266 331 aa25.6■■□□□ 1.69
NUP88-203ENST00000572019 IARSP41252 1262 aaKnown RBP25.59■■□□□ 1.69
NUP88-203ENST00000572019 VEGFBP49765 207 aa25.59■■□□□ 1.69
NUP88-203ENST00000572019 FZD9O00144 591 aa25.58■■□□□ 1.69
NUP88-203ENST00000572019 EPHX2P34913 555 aa25.58■■□□□ 1.69
NUP88-203ENST00000572019 TAF7Q15545 349 aaPredicted RBP25.58■■□□□ 1.69
NUP88-203ENST00000572019 HACL1Q9UJ83 578 aa25.58■■□□□ 1.69
NUP88-203ENST00000572019 MAP1SQ66K74 1059 aaPredicted RBP25.57■■□□□ 1.68
NUP88-203ENST00000572019 TTLL7Q6ZT98 887 aa25.57■■□□□ 1.68
NUP88-203ENST00000572019 TMEM88BA6NKF7 163 aa25.56■■□□□ 1.68
NUP88-203ENST00000572019 RGL2O15211 777 aa25.56■■□□□ 1.68
NUP88-203ENST00000572019 CRY2Q49AN0 593 aa25.56■■□□□ 1.68
NUP88-203ENST00000572019 RTKN2Q8IZC4 609 aa25.56■■□□□ 1.68
NUP88-203ENST00000572019 THUMPD2Q9BTF0 503 aaKnown RBP25.56■■□□□ 1.68
NUP88-203ENST00000572019 HTATSF1O43719 755 aaKnown RBP25.55■■□□□ 1.68
NUP88-203ENST00000572019 CLEC11AQ9Y240 323 aa25.55■■□□□ 1.68
NUP88-203ENST00000572019 UBN2Q6ZU65 1347 aa25.55■■□□□ 1.68
NUP88-203ENST00000572019 FMR1Q06787 632 aaKnown RBP eCLIP25.54■■□□□ 1.68
NUP88-203ENST00000572019 GPTP24298 496 aa25.53■■□□□ 1.68
NUP88-203ENST00000572019 GTF2E1P29083 439 aaPredicted RBP25.53■■□□□ 1.68
NUP88-203ENST00000572019 C3orf67Q6ZVT6 689 aa25.53■■□□□ 1.68
NUP88-203ENST00000572019 ALDH1B1P30837 517 aa25.52■■□□□ 1.68
NUP88-203ENST00000572019 CNTROBQ8N137 903 aa25.52■■□□□ 1.68
NUP88-203ENST00000572019 RRP7AQ9Y3A4 280 aaKnown RBP25.52■■□□□ 1.68
NUP88-203ENST00000572019 MAP3K15Q6ZN16 1313 aa25.52■■□□□ 1.68
NUP88-203ENST00000572019 MYL6BP14649 208 aa25.5■■□□□ 1.67
NUP88-203ENST00000572019 EIF4A1P60842 406 aaKnown RBP25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms