RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 ANXA1P04083 346 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 HCLS1P14317 486 aaPredicted RBP17.91■□□□□ 0.46
CIITA-204ENST00000570546 STX1AQ16623 288 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 AXDND1Q5T1B0 1012 aaPredicted RBP17.91■□□□□ 0.46
CIITA-204ENST00000570546 DEF6Q9H4E7 631 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 ZNF213O14771 459 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 GIMAP6Q6P9H5 292 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 ADGBQ8N7X0 1667 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 GOLGA8BA8MQT2 603 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 SOGA3Q5TF21 947 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 ABCA5Q8WWZ7 1642 aa17.9■□□□□ 0.46
CIITA-204ENST00000570546 GOLIM4O00461 696 aa17.9■□□□□ 0.46
CIITA-204ENST00000570546 FOXO3O43524 673 aa17.9■□□□□ 0.46
CIITA-204ENST00000570546 EIF3JO75822 258 aaKnown RBP17.9■□□□□ 0.46
CIITA-204ENST00000570546 NECAB1Q8N987 351 aa17.9■□□□□ 0.46
CIITA-204ENST00000570546 C16orf45Q96MC5 204 aaPredicted RBP17.9■□□□□ 0.46
CIITA-204ENST00000570546 NEMFO60524 1076 aa17.9■□□□□ 0.46
CIITA-204ENST00000570546 IFIT5Q13325 482 aaKnown RBP17.9■□□□□ 0.46
CIITA-204ENST00000570546 DMRT2Q9Y5R5 561 aa17.9■□□□□ 0.46
CIITA-204ENST00000570546 ZSCAN12O43309 604 aa17.89■□□□□ 0.45
CIITA-204ENST00000570546 EPB41L2O43491 1005 aaKnown RBP17.89■□□□□ 0.45
CIITA-204ENST00000570546 CEBPAP49715 358 aaPredicted RBP17.89■□□□□ 0.45
CIITA-204ENST00000570546 CBX1P83916 185 aa17.89■□□□□ 0.45
CIITA-204ENST00000570546 RIMS2Q9UQ26 1411 aa17.89■□□□□ 0.45
CIITA-204ENST00000570546 ZBTB7BO15156 539 aaPredicted RBP17.89■□□□□ 0.45
CIITA-204ENST00000570546 NAPBQ9H115 298 aa17.89■□□□□ 0.45
CIITA-204ENST00000570546 TMOD3Q9NYL9 352 aa17.89■□□□□ 0.45
CIITA-204ENST00000570546 EIF4G3O43432 1585 aaKnown RBP17.89■□□□□ 0.45
CIITA-204ENST00000570546 PIBF1Q8WXW3 757 aa17.88■□□□□ 0.45
CIITA-204ENST00000570546 MTHFSDQ2M296 383 aaKnown RBP17.88■□□□□ 0.45
CIITA-204ENST00000570546 CCDC181Q5TID7 509 aa17.88■□□□□ 0.45
CIITA-204ENST00000570546 TANGO6Q9C0B7 1094 aa17.88■□□□□ 0.45
CIITA-204ENST00000570546 ZNF165P49910 485 aa17.88■□□□□ 0.45
CIITA-204ENST00000570546 TOP1P11387 765 aaKnown RBP17.88■□□□□ 0.45
CIITA-204ENST00000570546 USP26Q9BXU7 913 aa17.88■□□□□ 0.45
CIITA-204ENST00000570546 MYO6Q9UM54 1294 aa17.88■□□□□ 0.45
CIITA-204ENST00000570546 KRT24Q2M2I5 525 aa17.87■□□□□ 0.45
CIITA-204ENST00000570546 ABCF2Q9UG63 623 aa17.87■□□□□ 0.45
CIITA-204ENST00000570546 NPATQ14207 1427 aa17.87■□□□□ 0.45
CIITA-204ENST00000570546 TNRQ92752 1358 aa17.87■□□□□ 0.45
CIITA-204ENST00000570546 ARHGAP29Q52LW3 1261 aa17.87■□□□□ 0.45
CIITA-204ENST00000570546 PRIM1P49642 420 aaKnown RBP17.87■□□□□ 0.45
CIITA-204ENST00000570546 LUC7LQ9NQ29 371 aaKnown RBP17.87■□□□□ 0.45
CIITA-204ENST00000570546 TRMT1Q9NXH9 659 aaKnown RBP17.87■□□□□ 0.45
CIITA-204ENST00000570546 ABCC10Q5T3U5 1492 aa17.87■□□□□ 0.45
CIITA-204ENST00000570546 RBM25P49756 843 aaKnown RBP17.87■□□□□ 0.45
CIITA-204ENST00000570546 UBE3BQ7Z3V4 1068 aa17.87■□□□□ 0.45
CIITA-204ENST00000570546 ZGPATQ8N5A5 531 aaKnown RBP17.87■□□□□ 0.45
CIITA-204ENST00000570546 SLC12A7Q9Y666 1083 aa17.87■□□□□ 0.45
CIITA-204ENST00000570546 DYNC1I1O14576 645 aa17.86■□□□□ 0.45
CIITA-204ENST00000570546 TMCO3Q6UWJ1 677 aa17.86■□□□□ 0.45
CIITA-204ENST00000570546 TXLNBQ8N3L3 684 aa17.86■□□□□ 0.45
CIITA-204ENST00000570546 CGNQ9P2M7 1197 aaKnown RBP17.86■□□□□ 0.45
CIITA-204ENST00000570546 RBM8AQ9Y5S9 174 aaKnown RBP17.86■□□□□ 0.45
CIITA-204ENST00000570546 ATP5J2-PTCD1G3V325 749 aa17.86■□□□□ 0.45
CIITA-204ENST00000570546 GSDMDP57764 484 aa17.86■□□□□ 0.45
CIITA-204ENST00000570546 CCDC196A0A1B0GTZ2 297 aa17.86■□□□□ 0.45
CIITA-204ENST00000570546 F13A1P00488 732 aa17.86■□□□□ 0.45
CIITA-204ENST00000570546 ZSCAN16Q9H4T2 348 aaPredicted RBP17.86■□□□□ 0.45
CIITA-204ENST00000570546 H0YHG0 523 aa17.86■□□□□ 0.45
CIITA-204ENST00000570546 ATP2B2Q01814 1243 aa17.86■□□□□ 0.45
CIITA-204ENST00000570546 SSRP1Q08945 709 aaKnown RBP17.86■□□□□ 0.45
CIITA-204ENST00000570546 PRDM10Q9NQV6 1147 aa17.86■□□□□ 0.45
CIITA-204ENST00000570546 GOLGA8AA7E2F4 631 aa17.85■□□□□ 0.45
CIITA-204ENST00000570546 SKIDA1Q1XH10 827 aa17.85■□□□□ 0.45
CIITA-204ENST00000570546 ANKRD24Q8TF21 1146 aa17.85■□□□□ 0.45
CIITA-204ENST00000570546 MSH6P52701 1360 aa17.85■□□□□ 0.45
CIITA-204ENST00000570546 MINDY4BA8MYZ0 360 aa17.85■□□□□ 0.45
CIITA-204ENST00000570546 CASQ1P31415 396 aa17.85■□□□□ 0.45
CIITA-204ENST00000570546 MAP3K12Q12852 859 aa17.85■□□□□ 0.45
CIITA-204ENST00000570546 CNNM3Q8NE01 707 aa17.85■□□□□ 0.45
CIITA-204ENST00000570546 PRIMPOLQ96LW4 560 aa17.85■□□□□ 0.45
CIITA-204ENST00000570546 ZNF830Q96NB3 372 aaPredicted RBP17.85■□□□□ 0.45
CIITA-204ENST00000570546 ZBTB3Q9H5J0 574 aa17.85■□□□□ 0.45
CIITA-204ENST00000570546 USP16Q9Y5T5 823 aa17.85■□□□□ 0.45
CIITA-204ENST00000570546 CAVIN2O95810 425 aa17.85■□□□□ 0.45
CIITA-204ENST00000570546 CWC25Q9NXE8 425 aaPredicted RBP17.84■□□□□ 0.45
CIITA-204ENST00000570546 UHRF1BP1LA0JNW5 1464 aa17.84■□□□□ 0.45
CIITA-204ENST00000570546 BIN1O00499 593 aa17.84■□□□□ 0.45
CIITA-204ENST00000570546 ALDH1L1O75891 902 aa17.84■□□□□ 0.45
CIITA-204ENST00000570546 URI1O94763 535 aaPredicted RBP17.84■□□□□ 0.45
CIITA-204ENST00000570546 EIF5P55010 431 aaKnown RBP17.84■□□□□ 0.45
CIITA-204ENST00000570546 IFNL2Q8IZJ0 200 aa17.84■□□□□ 0.45
CIITA-204ENST00000570546 JARID2Q92833 1246 aaPredicted RBP17.84■□□□□ 0.45
CIITA-204ENST00000570546 ZHX3Q9H4I2 956 aa17.84■□□□□ 0.45
CIITA-204ENST00000570546 IQCEQ6IPM2 695 aa17.84■□□□□ 0.45
CIITA-204ENST00000570546 KLHL10Q6JEL2 608 aa17.84■□□□□ 0.45
CIITA-204ENST00000570546 TMC6Q7Z403 805 aa17.84■□□□□ 0.45
CIITA-204ENST00000570546 TRIM35Q9UPQ4 493 aa17.84■□□□□ 0.45
CIITA-204ENST00000570546 ODF2Q5BJF6 829 aa17.83■□□□□ 0.45
CIITA-204ENST00000570546 KIAA1328Q86T90 577 aa17.83■□□□□ 0.45
CIITA-204ENST00000570546 ANKRD18BA2A2Z9 1011 aa17.83■□□□□ 0.44
CIITA-204ENST00000570546 BRF1Q92994 677 aa17.83■□□□□ 0.44
CIITA-204ENST00000570546 IFIT3O14879 490 aaKnown RBP17.83■□□□□ 0.44
CIITA-204ENST00000570546 YTHDC2Q9H6S0 1430 aaKnown RBP17.82■□□□□ 0.44
CIITA-204ENST00000570546 ERICH4A6NGS2 130 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 POLR3DP05423 398 aaPredicted RBP17.82■□□□□ 0.44
CIITA-204ENST00000570546 SLC5A1P13866 664 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 DNM1Q05193 864 aaKnown RBP17.82■□□□□ 0.44
CIITA-204ENST00000570546 CCDC82Q8N4S0 544 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms