RNA–Protein interactions for RNA: ENST00000570385.1

CTDNEP1-203, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-203ENST00000570385 SMC1BQ8NDV3 1235 aa11.46□□□□□ -0.57
CTDNEP1-203ENST00000570385 SRGNP10124 158 aa11.45□□□□□ -0.58
CTDNEP1-203ENST00000570385 VEGFAP15692 232 aaPredicted RBP11.45□□□□□ -0.58
CTDNEP1-203ENST00000570385 TAF7Q15545 349 aaPredicted RBP11.45□□□□□ -0.58
CTDNEP1-203ENST00000570385 PRPF40BQ6NWY9 871 aaKnown RBP11.45□□□□□ -0.58
CTDNEP1-203ENST00000570385 THUMPD2Q9BTF0 503 aaKnown RBP11.45□□□□□ -0.58
CTDNEP1-203ENST00000570385 NIP7Q9Y221 180 aaKnown RBP eCLIP11.45□□□□□ -0.58
CTDNEP1-203ENST00000570385 COL11A2P13942 1736 aaPredicted RBP11.45□□□□□ -0.58
CTDNEP1-203ENST00000570385 SLX4Q8IY92 1834 aa11.44□□□□□ -0.58
CTDNEP1-203ENST00000570385 ZC3H4Q9UPT8 1303 aaKnown RBP11.44□□□□□ -0.58
CTDNEP1-203ENST00000570385 TNRC6CQ9HCJ0 1690 aaKnown RBP11.44□□□□□ -0.58
CTDNEP1-203ENST00000570385 HLFQ16534 295 aa11.44□□□□□ -0.58
CTDNEP1-203ENST00000570385 OLFM4Q6UX06 510 aa11.44□□□□□ -0.58
CTDNEP1-203ENST00000570385 CNKSR1Q969H4 720 aa11.44□□□□□ -0.58
CTDNEP1-203ENST00000570385 KLRG1Q96E93 195 aa11.44□□□□□ -0.58
CTDNEP1-203ENST00000570385 MASTLQ96GX5 879 aa11.44□□□□□ -0.58
CTDNEP1-203ENST00000570385 TAOK3Q9H2K8 898 aa11.44□□□□□ -0.58
CTDNEP1-203ENST00000570385 WDR90Q96KV7 1748 aa11.43□□□□□ -0.58
CTDNEP1-203ENST00000570385 CACNA1SQ13698 1873 aa11.43□□□□□ -0.58
CTDNEP1-203ENST00000570385 POTECB2RU33 542 aa11.43□□□□□ -0.58
CTDNEP1-203ENST00000570385 HTATSF1O43719 755 aaKnown RBP11.43□□□□□ -0.58
CTDNEP1-203ENST00000570385 STYK1Q6J9G0 422 aa11.43□□□□□ -0.58
CTDNEP1-203ENST00000570385 DPY19L2Q6NUT2 758 aa11.43□□□□□ -0.58
CTDNEP1-203ENST00000570385 PDZRN3Q9UPQ7 1066 aa11.43□□□□□ -0.58
CTDNEP1-203ENST00000570385 ZNF652Q9Y2D9 606 aa11.43□□□□□ -0.58
CTDNEP1-203ENST00000570385 TIAM2Q8IVF5 1701 aa11.43□□□□□ -0.58
CTDNEP1-203ENST00000570385 DDNO94850 711 aaPredicted RBP11.42□□□□□ -0.58
CTDNEP1-203ENST00000570385 NEFMP07197 916 aa11.42□□□□□ -0.58
CTDNEP1-203ENST00000570385 CLEC4GQ6UXB4 293 aa11.42□□□□□ -0.58
CTDNEP1-203ENST00000570385 RRP7AQ9Y3A4 280 aaKnown RBP11.42□□□□□ -0.58
CTDNEP1-203ENST00000570385 BCORQ6W2J9 1755 aa11.41□□□□□ -0.58
CTDNEP1-203ENST00000570385 FER1L6Q2WGJ9 1857 aa11.41□□□□□ -0.58
CTDNEP1-203ENST00000570385 GTF2E1P29083 439 aaPredicted RBP11.41□□□□□ -0.58
CTDNEP1-203ENST00000570385 TPTE2Q6XPS3 522 aa11.41□□□□□ -0.58
CTDNEP1-203ENST00000570385 POTEIP0CG38 1075 aa11.4□□□□□ -0.58
CTDNEP1-203ENST00000570385 POTEJP0CG39 1038 aa11.4□□□□□ -0.58
CTDNEP1-203ENST00000570385 MYL6BP14649 208 aa11.4□□□□□ -0.58
CTDNEP1-203ENST00000570385 NPR1P16066 1061 aa11.4□□□□□ -0.58
CTDNEP1-203ENST00000570385 GPTP24298 496 aa11.4□□□□□ -0.58
CTDNEP1-203ENST00000570385 TTLL7Q6ZT98 887 aa11.4□□□□□ -0.58
CTDNEP1-203ENST00000570385 NUTM1Q86Y26 1132 aa11.4□□□□□ -0.58
CTDNEP1-203ENST00000570385 C7orf43Q8WVR3 580 aa11.4□□□□□ -0.58
CTDNEP1-203ENST00000570385 PLEKHF1Q96S99 279 aa11.4□□□□□ -0.58
CTDNEP1-203ENST00000570385 ZNF277Q9NRM2 450 aaPredicted RBP11.4□□□□□ -0.58
CTDNEP1-203ENST00000570385 LTBP3Q9NS15 1303 aa11.39□□□□□ -0.59
CTDNEP1-203ENST00000570385 EIF4A1P60842 406 aaKnown RBP11.39□□□□□ -0.59
CTDNEP1-203ENST00000570385 NFE2L2Q16236 605 aa11.39□□□□□ -0.59
CTDNEP1-203ENST00000570385 CCDC93Q567U6 631 aa11.39□□□□□ -0.59
CTDNEP1-203ENST00000570385 ZBTB3Q9H5J0 574 aa11.39□□□□□ -0.59
CTDNEP1-203ENST00000570385 DLG5Q8TDM6 1919 aa11.39□□□□□ -0.59
CTDNEP1-203ENST00000570385 DICER1Q9UPY3 1922 aaKnown RBP11.39□□□□□ -0.59
CTDNEP1-203ENST00000570385 COL13A1Q5TAT6 717 aaPredicted RBP11.38□□□□□ -0.59
CTDNEP1-203ENST00000570385 SOGA3Q5TF21 947 aa11.38□□□□□ -0.59
CTDNEP1-203ENST00000570385 JMYQ8N9B5 988 aa11.38□□□□□ -0.59
CTDNEP1-203ENST00000570385 PNISRQ8TF01 805 aaKnown RBP11.38□□□□□ -0.59
CTDNEP1-203ENST00000570385 MAPK8IP3Q9UPT6 1336 aa11.37□□□□□ -0.59
CTDNEP1-203ENST00000570385 KLRG2A4D1S0 409 aaPredicted RBP11.37□□□□□ -0.59
CTDNEP1-203ENST00000570385 TCERG1O14776 1098 aaKnown RBP11.37□□□□□ -0.59
CTDNEP1-203ENST00000570385 KIF6Q6ZMV9 814 aa11.37□□□□□ -0.59
CTDNEP1-203ENST00000570385 SLC51AQ86UW1 340 aa11.37□□□□□ -0.59
CTDNEP1-203ENST00000570385 ABCC12Q96J65 1359 aa11.37□□□□□ -0.59
CTDNEP1-203ENST00000570385 MAP3K15Q6ZN16 1313 aa11.36□□□□□ -0.59
CTDNEP1-203ENST00000570385 ZNF541Q9H0D2 1346 aa11.36□□□□□ -0.59
CTDNEP1-203ENST00000570385 ANXA1P04083 346 aa11.36□□□□□ -0.59
CTDNEP1-203ENST00000570385 EIF2S2P20042 333 aaKnown RBP11.36□□□□□ -0.59
CTDNEP1-203ENST00000570385 FKBP4Q02790 459 aaKnown RBP eCLIP11.36□□□□□ -0.59
CTDNEP1-203ENST00000570385 CHADLQ6NUI6 762 aa11.36□□□□□ -0.59
CTDNEP1-203ENST00000570385 SYNE4Q8N205 404 aa11.36□□□□□ -0.59
CTDNEP1-203ENST00000570385 TSPYL4Q9UJ04 414 aa11.36□□□□□ -0.59
CTDNEP1-203ENST00000570385 UBN2Q6ZU65 1347 aa11.35□□□□□ -0.59
CTDNEP1-203ENST00000570385 ERVV-1B6SEH8 477 aa11.35□□□□□ -0.59
CTDNEP1-203ENST00000570385 ALDH1B1P30837 517 aa11.35□□□□□ -0.59
CTDNEP1-203ENST00000570385 RIPK4P57078 832 aa11.35□□□□□ -0.59
CTDNEP1-203ENST00000570385 EAPPQ56P03 285 aaPredicted RBP11.35□□□□□ -0.59
CTDNEP1-203ENST00000570385 SUSD4Q5VX71 490 aa11.35□□□□□ -0.59
CTDNEP1-203ENST00000570385 RTKN2Q8IZC4 609 aa11.35□□□□□ -0.59
CTDNEP1-203ENST00000570385 NECTIN2Q92692 538 aa11.35□□□□□ -0.59
CTDNEP1-203ENST00000570385 MKRN1Q9UHC7 482 aaKnown RBP11.35□□□□□ -0.59
CTDNEP1-203ENST00000570385 KDM3BQ7LBC6 1761 aa11.35□□□□□ -0.59
CTDNEP1-203ENST00000570385 LAMB4A4D0S4 1761 aa11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 ARFGEF2Q9Y6D5 1785 aa11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 RGL2O15211 777 aa11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 CAPN15O75808 1086 aa11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 IARSP41252 1262 aaKnown RBP11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 NEUROD2Q15784 382 aa11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 PROSER3Q2NL68 480 aa11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 C3orf67Q6ZVT6 689 aa11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 CCDC146Q8IYE0 955 aa11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 RPGRQ92834 1020 aaKnown RBP11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 ZNF428Q96B54 188 aa11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 NYXQ9GZU5 481 aa11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 PNNQ9H307 717 aaKnown RBP11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 TAF1DQ9H5J8 278 aaPredicted RBP11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 NUP98P52948 1817 aa11.34□□□□□ -0.59
CTDNEP1-203ENST00000570385 IQCA1LA6NCM1 817 aa11.33□□□□□ -0.6
CTDNEP1-203ENST00000570385 HSPA1AP0DMV8 641 aaKnown RBP11.33□□□□□ -0.6
CTDNEP1-203ENST00000570385 HSPA1BP0DMV9 641 aaKnown RBP11.33□□□□□ -0.6
CTDNEP1-203ENST00000570385 DDX10Q13206 875 aaKnown RBP11.33□□□□□ -0.6
CTDNEP1-203ENST00000570385 CRY2Q49AN0 593 aa11.33□□□□□ -0.6
CTDNEP1-203ENST00000570385 CLEC11AQ9Y240 323 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms