RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 MCOLN1Q9GZU1 580 aa24.91■■□□□ 1.58
CLK3-227ENST00000570296 DDX21Q9NR30 783 aaKnown RBP eCLIP24.91■■□□□ 1.58
CLK3-227ENST00000570296 SRGNP10124 158 aa24.9■■□□□ 1.58
CLK3-227ENST00000570296 EIF5P55010 431 aaKnown RBP24.9■■□□□ 1.58
CLK3-227ENST00000570296 AEBP1Q8IUX7 1158 aa24.9■■□□□ 1.58
CLK3-227ENST00000570296 MASTLQ96GX5 879 aa24.9■■□□□ 1.58
CLK3-227ENST00000570296 CANXP27824 592 aaKnown RBP24.89■■□□□ 1.58
CLK3-227ENST00000570296 TNNT2P45379 298 aaPredicted RBP24.89■■□□□ 1.58
CLK3-227ENST00000570296 CCDC93Q567U6 631 aa24.89■■□□□ 1.58
CLK3-227ENST00000570296 TRPM7Q96QT4 1865 aa24.89■■□□□ 1.57
CLK3-227ENST00000570296 CASP8AP2Q9UKL3 1982 aa24.89■■□□□ 1.57
CLK3-227ENST00000570296 CA12O43570 354 aa24.88■■□□□ 1.57
CLK3-227ENST00000570296 PAXIP1Q6ZW49 1069 aaPredicted RBP24.88■■□□□ 1.57
CLK3-227ENST00000570296 CCDC24Q8N4L8 307 aa24.88■■□□□ 1.57
CLK3-227ENST00000570296 C7orf43Q8WVR3 580 aa24.88■■□□□ 1.57
CLK3-227ENST00000570296 UBR2Q8IWV8 1755 aa24.88■■□□□ 1.57
CLK3-227ENST00000570296 RNF123Q5XPI4 1314 aa24.87■■□□□ 1.57
CLK3-227ENST00000570296 FKBP4Q02790 459 aaKnown RBP eCLIP24.87■■□□□ 1.57
CLK3-227ENST00000570296 SLC39A6Q13433 755 aa24.87■■□□□ 1.57
CLK3-227ENST00000570296 AKAP4Q5JQC9 854 aa24.87■■□□□ 1.57
CLK3-227ENST00000570296 CNBD1Q8NA66 436 aa24.87■■□□□ 1.57
CLK3-227ENST00000570296 MAP2K2P36507 400 aa24.86■■□□□ 1.57
CLK3-227ENST00000570296 CYP4F22Q6NT55 531 aa24.86■■□□□ 1.57
CLK3-227ENST00000570296 STARD3NLO95772 234 aa24.85■■□□□ 1.57
CLK3-227ENST00000570296 ST5P78524 1137 aa24.85■■□□□ 1.57
CLK3-227ENST00000570296 TSKSQ9UJT2 592 aa24.85■■□□□ 1.57
CLK3-227ENST00000570296 GPC2Q8N158 579 aa24.84■■□□□ 1.57
CLK3-227ENST00000570296 ZNF277Q9NRM2 450 aaPredicted RBP24.84■■□□□ 1.57
CLK3-227ENST00000570296 FZD9O00144 591 aa24.83■■□□□ 1.57
CLK3-227ENST00000570296 NPHP1O15259 732 aa24.83■■□□□ 1.57
CLK3-227ENST00000570296 GRM1Q13255 1194 aa24.83■■□□□ 1.57
CLK3-227ENST00000570296 SULT6B1Q6IMI4 303 aa24.83■■□□□ 1.57
CLK3-227ENST00000570296 SETDB2Q96T68 719 aa24.82■■□□□ 1.56
CLK3-227ENST00000570296 LGR6Q9HBX8 967 aa24.82■■□□□ 1.56
CLK3-227ENST00000570296 RTKN2Q8IZC4 609 aa24.81■■□□□ 1.56
CLK3-227ENST00000570296 TLL2Q9Y6L7 1015 aa24.81■■□□□ 1.56
CLK3-227ENST00000570296 RNMTO43148 476 aaKnown RBP24.8■■□□□ 1.56
CLK3-227ENST00000570296 DGKZQ13574 1117 aa24.8■■□□□ 1.56
CLK3-227ENST00000570296 TBC1D2BQ9UPU7 963 aa24.79■■□□□ 1.56
CLK3-227ENST00000570296 AOC2O75106 756 aa24.78■■□□□ 1.56
CLK3-227ENST00000570296 NPR1P16066 1061 aa24.77■■□□□ 1.56
CLK3-227ENST00000570296 IARSP41252 1262 aaKnown RBP24.77■■□□□ 1.56
CLK3-227ENST00000570296 PRPF38BQ5VTL8 546 aaKnown RBP24.77■■□□□ 1.56
CLK3-227ENST00000570296 CST9Q5W186 159 aa24.77■■□□□ 1.56
CLK3-227ENST00000570296 BCORQ6W2J9 1755 aa24.77■■□□□ 1.56
CLK3-227ENST00000570296 LMOD1P29536 600 aaPredicted RBP24.76■■□□□ 1.55
CLK3-227ENST00000570296 IL6STP40189 918 aaPredicted RBP24.76■■□□□ 1.55
CLK3-227ENST00000570296 BRPF1P55201 1214 aaPredicted RBP24.76■■□□□ 1.55
CLK3-227ENST00000570296 FMR1Q06787 632 aaKnown RBP eCLIP24.76■■□□□ 1.55
CLK3-227ENST00000570296 TEX13AQ9BXU3 409 aaPredicted RBP24.74■■□□□ 1.55
CLK3-227ENST00000570296 ZNF330Q9Y3S2 320 aaPredicted RBP24.74■■□□□ 1.55
CLK3-227ENST00000570296 CAMTA2O94983 1202 aa24.73■■□□□ 1.55
CLK3-227ENST00000570296 TTC5Q8N0Z6 440 aa24.73■■□□□ 1.55
CLK3-227ENST00000570296 JDP2Q8WYK2 163 aa24.73■■□□□ 1.55
CLK3-227ENST00000570296 KLRG2A4D1S0 409 aaPredicted RBP24.72■■□□□ 1.55
CLK3-227ENST00000570296 SYNE4Q8N205 404 aa24.72■■□□□ 1.55
CLK3-227ENST00000570296 HHIPL1Q96JK4 782 aa24.72■■□□□ 1.55
CLK3-227ENST00000570296 TRAF5O00463 557 aa24.71■■□□□ 1.55
CLK3-227ENST00000570296 EIF6P56537 245 aaKnown RBP24.71■■□□□ 1.55
CLK3-227ENST00000570296 OLFM4Q6UX06 510 aa24.71■■□□□ 1.55
CLK3-227ENST00000570296 USP50Q70EL3 339 aaPredicted RBP24.71■■□□□ 1.55
CLK3-227ENST00000570296 NPM2Q86SE8 214 aaKnown RBP24.71■■□□□ 1.55
CLK3-227ENST00000570296 SAPCD2Q86UD0 394 aa24.71■■□□□ 1.55
CLK3-227ENST00000570296 IL13P35225 146 aa24.7■■□□□ 1.54
CLK3-227ENST00000570296 NBPF5PQ86XG9 351 aaPredicted RBP24.7■■□□□ 1.54
CLK3-227ENST00000570296 PSMD1Q99460 953 aa24.7■■□□□ 1.54
CLK3-227ENST00000570296 GJA3Q9Y6H8 435 aa24.7■■□□□ 1.54
CLK3-227ENST00000570296 SCNN1DP51172 638 aa24.69■■□□□ 1.54
CLK3-227ENST00000570296 HEG1Q9ULI3 1381 aa24.68■■□□□ 1.54
CLK3-227ENST00000570296 EPS15P42566 896 aa24.68■■□□□ 1.54
CLK3-227ENST00000570296 SNED1Q8TER0 1413 aa24.68■■□□□ 1.54
CLK3-227ENST00000570296 ZNF496Q96IT1 587 aaPredicted RBP24.67■■□□□ 1.54
CLK3-227ENST00000570296 ALDH1B1P30837 517 aa24.66■■□□□ 1.54
CLK3-227ENST00000570296 SOX10P56693 466 aa24.66■■□□□ 1.54
CLK3-227ENST00000570296 CLEC4GQ6UXB4 293 aa24.66■■□□□ 1.54
CLK3-227ENST00000570296 COL4A5P29400 1685 aa24.66■■□□□ 1.54
CLK3-227ENST00000570296 CIAPIN1Q6FI81 312 aa24.65■■□□□ 1.54
CLK3-227ENST00000570296 DZIP3Q86Y13 1208 aaKnown RBP24.65■■□□□ 1.54
CLK3-227ENST00000570296 CELF2O95319 508 aaKnown RBP24.64■■□□□ 1.54
CLK3-227ENST00000570296 ZNF790Q6PG37 636 aa24.63■■□□□ 1.53
CLK3-227ENST00000570296 A1BGP04217 495 aa24.62■■□□□ 1.53
CLK3-227ENST00000570296 MTHFSDQ2M296 383 aaKnown RBP24.62■■□□□ 1.53
CLK3-227ENST00000570296 CC2D2BQ6DHV5 1058 aa24.62■■□□□ 1.53
CLK3-227ENST00000570296 TPTE2Q6XPS3 522 aa24.62■■□□□ 1.53
CLK3-227ENST00000570296 ZNF652Q9Y2D9 606 aa24.62■■□□□ 1.53
CLK3-227ENST00000570296 NOGQ13253 232 aa24.61■■□□□ 1.53
CLK3-227ENST00000570296 MORC1Q86VD1 984 aa24.61■■□□□ 1.53
CLK3-227ENST00000570296 SIPA1L3O60292 1781 aaPredicted RBP24.61■■□□□ 1.53
CLK3-227ENST00000570296 ADARB2Q9NS39 739 aaKnown RBP24.6■■□□□ 1.53
CLK3-227ENST00000570296 GRIPAP1Q4V328 841 aa24.59■■□□□ 1.53
CLK3-227ENST00000570296 RGL2O15211 777 aa24.58■■□□□ 1.53
CLK3-227ENST00000570296 FMNL2Q96PY5 1086 aa24.58■■□□□ 1.53
CLK3-227ENST00000570296 LARGE2Q8N3Y3 721 aa24.57■■□□□ 1.52
CLK3-227ENST00000570296 SAGE1Q9NXZ1 904 aa24.57■■□□□ 1.52
CLK3-227ENST00000570296 TEFQ10587 303 aa24.56■■□□□ 1.52
CLK3-227ENST00000570296 GPRC5DQ9NZD1 345 aa24.56■■□□□ 1.52
CLK3-227ENST00000570296 HMOX1P09601 288 aa24.55■■□□□ 1.52
CLK3-227ENST00000570296 POLR3GLQ9BT43 218 aa24.55■■□□□ 1.52
CLK3-227ENST00000570296 GLIS2Q9BZE0 524 aaPredicted RBP24.55■■□□□ 1.52
CLK3-227ENST00000570296 PGAP2Q9UHJ9 254 aa24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms