RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 C11orf91Q3C1V1 193 aa9.45□□□□□ -0.9
UBR1-208ENST00000569066 POLMQ9NP87 494 aaPredicted RBP9.45□□□□□ -0.9
UBR1-208ENST00000569066 TREML1Q86YW5 311 aa9.45□□□□□ -0.9
UBR1-208ENST00000569066 ZNF280CQ8ND82 737 aa9.45□□□□□ -0.9
UBR1-208ENST00000569066 GPR152Q8TDT2 470 aa9.45□□□□□ -0.9
UBR1-208ENST00000569066 HSH2DQ96JZ2 352 aa9.45□□□□□ -0.9
UBR1-208ENST00000569066 USP20Q9Y2K6 914 aa9.45□□□□□ -0.9
UBR1-208ENST00000569066 C6orf118Q5T5N4 469 aa9.44□□□□□ -0.9
UBR1-208ENST00000569066 ALKBH2Q6NS38 261 aa9.44□□□□□ -0.9
UBR1-208ENST00000569066 C7orf43Q8WVR3 580 aa9.44□□□□□ -0.9
UBR1-208ENST00000569066 SPINT1O43278 529 aa9.44□□□□□ -0.9
UBR1-208ENST00000569066 PRICKLE2Q7Z3G6 844 aa9.44□□□□□ -0.9
UBR1-208ENST00000569066 NIF3L1Q9GZT8 377 aa9.44□□□□□ -0.9
UBR1-208ENST00000569066 PDGFAP04085 211 aa9.43□□□□□ -0.9
UBR1-208ENST00000569066 TSNAXIP1Q2TAA8 658 aa9.43□□□□□ -0.9
UBR1-208ENST00000569066 GJD3Q8N144 294 aa9.43□□□□□ -0.9
UBR1-208ENST00000569066 CAPN5O15484 640 aaPredicted RBP9.43□□□□□ -0.9
UBR1-208ENST00000569066 POU4F2Q12837 409 aa9.43□□□□□ -0.9
UBR1-208ENST00000569066 TSEN34Q9BSV6 310 aaKnown RBP9.43□□□□□ -0.9
UBR1-208ENST00000569066 BMP1P13497 986 aa9.42□□□□□ -0.9
UBR1-208ENST00000569066 GNASQ5JWF2 1037 aa9.42□□□□□ -0.9
UBR1-208ENST00000569066 NUDT16Q96DE0 195 aaKnown RBP9.42□□□□□ -0.9
UBR1-208ENST00000569066 LDHBP07195 334 aaKnown RBP9.42□□□□□ -0.9
UBR1-208ENST00000569066 ATP4AP20648 1035 aa9.42□□□□□ -0.9
UBR1-208ENST00000569066 RNF144AP50876 292 aaPredicted RBP9.42□□□□□ -0.9
UBR1-208ENST00000569066 TCF3P15923 654 aa9.41□□□□□ -0.9
UBR1-208ENST00000569066 ORC1Q13415 861 aa9.41□□□□□ -0.9
UBR1-208ENST00000569066 RHPN1Q8TCX5 695 aa9.41□□□□□ -0.9
UBR1-208ENST00000569066 GGNBP2Q9H3C7 697 aa9.41□□□□□ -0.9
UBR1-208ENST00000569066 BMP2P12643 396 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 GPC1P35052 558 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 PRR20EP86478 221 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 PRR20CP86479 221 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 PRR20DP86480 221 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 PRR20BP86481 221 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 PRR20AP86496 221 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 RNF217Q8TC41 542 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 DMRTB1Q96MA1 342 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 DUSP9Q99956 384 aaKnown RBP9.4□□□□□ -0.9
UBR1-208ENST00000569066 RHOQP17081 205 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 MZF1P28698 734 aaPredicted RBP9.4□□□□□ -0.9
UBR1-208ENST00000569066 GTF2E1P29083 439 aaPredicted RBP9.4□□□□□ -0.9
UBR1-208ENST00000569066 PLCB3Q01970 1234 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 COL19A1Q14993 1142 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 C8orf34Q49A92 452 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 CITED4Q96RK1 184 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 BACH2Q9BYV9 841 aa9.4□□□□□ -0.9
UBR1-208ENST00000569066 PNMA6FA0A0J9YX94 578 aa9.39□□□□□ -0.91
UBR1-208ENST00000569066 PARP2Q9UGN5 583 aa9.39□□□□□ -0.91
UBR1-208ENST00000569066 PDE3BQ13370 1112 aa9.38□□□□□ -0.91
UBR1-208ENST00000569066 MRPL58Q14197 206 aaKnown RBP9.38□□□□□ -0.91
UBR1-208ENST00000569066 LDLRAD1Q5T700 205 aa9.38□□□□□ -0.91
UBR1-208ENST00000569066 C1orf53Q5VUE5 145 aa9.38□□□□□ -0.91
UBR1-208ENST00000569066 SUSD3Q96L08 255 aa9.38□□□□□ -0.91
UBR1-208ENST00000569066 OPLAHO14841 1288 aa9.38□□□□□ -0.91
UBR1-208ENST00000569066 MICAL2O94851 1124 aa9.38□□□□□ -0.91
UBR1-208ENST00000569066 NBPF1Q3BBV0 1214 aa9.38□□□□□ -0.91
UBR1-208ENST00000569066 NBPF10Q6P3W6 841 aaKnown RBP9.38□□□□□ -0.91
UBR1-208ENST00000569066 ALKBH8Q96BT7 664 aaKnown RBP9.37□□□□□ -0.91
UBR1-208ENST00000569066 CFHR5Q9BXR6 569 aa9.37□□□□□ -0.91
UBR1-208ENST00000569066 DMGDHQ9UI17 866 aaKnown RBP9.37□□□□□ -0.91
UBR1-208ENST00000569066 FIGNL2A6NMB9 653 aa9.36□□□□□ -0.91
UBR1-208ENST00000569066 TGFBR3LH3BV60 316 aa9.36□□□□□ -0.91
UBR1-208ENST00000569066 VAMP1P23763 118 aa9.36□□□□□ -0.91
UBR1-208ENST00000569066 TRIP4Q15650 581 aaPredicted RBP9.36□□□□□ -0.91
UBR1-208ENST00000569066 MRPL14Q6P1L8 145 aaKnown RBP9.36□□□□□ -0.91
UBR1-208ENST00000569066 SPATA31C2B4DYI2 1134 aa9.35□□□□□ -0.91
UBR1-208ENST00000569066 PRPF40AO75400 957 aaKnown RBP9.35□□□□□ -0.91
UBR1-208ENST00000569066 UPP2O95045 317 aa9.35□□□□□ -0.91
UBR1-208ENST00000569066 IDH3AP50213 366 aa9.35□□□□□ -0.91
UBR1-208ENST00000569066 ENOX2Q16206 610 aaKnown RBP9.35□□□□□ -0.91
UBR1-208ENST00000569066 C9orf131Q5VYM1 1079 aa9.35□□□□□ -0.91
UBR1-208ENST00000569066 BICDL1Q6ZP65 573 aa9.35□□□□□ -0.91
UBR1-208ENST00000569066 LRRC69Q6ZNQ3 347 aa9.35□□□□□ -0.91
UBR1-208ENST00000569066 GPAMQ9HCL2 828 aa9.35□□□□□ -0.91
UBR1-208ENST00000569066 PDZRN3Q9UPQ7 1066 aa9.35□□□□□ -0.91
UBR1-208ENST00000569066 GRNP28799 593 aaKnown RBP9.34□□□□□ -0.91
UBR1-208ENST00000569066 ARSJQ5FYB0 599 aaPredicted RBP9.34□□□□□ -0.91
UBR1-208ENST00000569066 ZDHHC3Q9NYG2 299 aa9.34□□□□□ -0.91
UBR1-208ENST00000569066 FAM187AA6NFU0 413 aa9.34□□□□□ -0.91
UBR1-208ENST00000569066 LYSMD3Q7Z3D4 306 aa9.34□□□□□ -0.91
UBR1-208ENST00000569066 USP5P45974 858 aa9.33□□□□□ -0.92
UBR1-208ENST00000569066 XPCQ01831 940 aaPredicted RBP9.33□□□□□ -0.92
UBR1-208ENST00000569066 USPL1Q5W0Q7 1092 aa9.33□□□□□ -0.92
UBR1-208ENST00000569066 FOXD3Q9UJU5 478 aaPredicted RBP9.33□□□□□ -0.92
UBR1-208ENST00000569066 TTLL8A6PVC2 850 aa9.33□□□□□ -0.92
UBR1-208ENST00000569066 EIF1AYO14602 144 aaKnown RBP9.33□□□□□ -0.92
UBR1-208ENST00000569066 TATP17735 454 aaPredicted RBP9.33□□□□□ -0.92
UBR1-208ENST00000569066 PI16Q6UXB8 463 aa9.33□□□□□ -0.92
UBR1-208ENST00000569066 TRIM46Q7Z4K8 759 aa9.32□□□□□ -0.92
UBR1-208ENST00000569066 BTLAQ7Z6A9 289 aa9.32□□□□□ -0.92
UBR1-208ENST00000569066 ZIC5Q96T25 663 aa9.32□□□□□ -0.92
UBR1-208ENST00000569066 LOC105371045A0A1W2PR82 267 aa9.31□□□□□ -0.92
UBR1-208ENST00000569066 INPP5BP32019 993 aa9.31□□□□□ -0.92
UBR1-208ENST00000569066 MSX1P28360 303 aa9.31□□□□□ -0.92
UBR1-208ENST00000569066 IRS1P35568 1242 aa9.31□□□□□ -0.92
UBR1-208ENST00000569066 RUBCNLQ9H714 662 aa9.31□□□□□ -0.92
UBR1-208ENST00000569066 TIMMDC1Q9NPL8 285 aa9.31□□□□□ -0.92
UBR1-208ENST00000569066 DAB2P98082 770 aa9.3□□□□□ -0.92
UBR1-208ENST00000569066 TMC4Q7Z404 712 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms