RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 NGEFQ8N5V2 710 aa19.65■□□□□ 0.74
VPS39-210ENST00000568357 EIF2S2P20042 333 aaKnown RBP19.64■□□□□ 0.73
VPS39-210ENST00000568357 RBM46Q8TBY0 533 aaKnown RBP19.64■□□□□ 0.73
VPS39-210ENST00000568357 CFAP44Q96MT7 982 aa19.64■□□□□ 0.73
VPS39-210ENST00000568357 ZNF853P0CG23 659 aa19.63■□□□□ 0.73
VPS39-210ENST00000568357 MYL6BP14649 208 aa19.63■□□□□ 0.73
VPS39-210ENST00000568357 CHRNA5P30532 468 aa19.63■□□□□ 0.73
VPS39-210ENST00000568357 PDIA6Q15084 440 aa19.62■□□□□ 0.73
VPS39-210ENST00000568357 HLFQ16534 295 aa19.62■□□□□ 0.73
VPS39-210ENST00000568357 CLEC4GQ6UXB4 293 aa19.62■□□□□ 0.73
VPS39-210ENST00000568357 SETDB2Q96T68 719 aa19.62■□□□□ 0.73
VPS39-210ENST00000568357 BCS1LQ9Y276 419 aa19.62■□□□□ 0.73
VPS39-210ENST00000568357 ARFGEF1Q9Y6D6 1849 aa19.61■□□□□ 0.73
VPS39-210ENST00000568357 TTLL7Q6ZT98 887 aa19.61■□□□□ 0.73
VPS39-210ENST00000568357 CCDC24Q8N4L8 307 aa19.61■□□□□ 0.73
VPS39-210ENST00000568357 MBIPQ9NS73 344 aa19.61■□□□□ 0.73
VPS39-210ENST00000568357 TNRC6CQ9HCJ0 1690 aaKnown RBP19.6■□□□□ 0.73
VPS39-210ENST00000568357 PROSER3Q2NL68 480 aa19.6■□□□□ 0.73
VPS39-210ENST00000568357 LRP10Q7Z4F1 713 aa19.6■□□□□ 0.73
VPS39-210ENST00000568357 NECTIN2Q92692 538 aa19.6■□□□□ 0.73
VPS39-210ENST00000568357 ERBB4Q15303 1308 aa19.59■□□□□ 0.73
VPS39-210ENST00000568357 ANXA1P04083 346 aa19.59■□□□□ 0.73
VPS39-210ENST00000568357 PRR5LQ6MZQ0 368 aa19.59■□□□□ 0.73
VPS39-210ENST00000568357 ARHGAP27Q6ZUM4 889 aa19.59■□□□□ 0.73
VPS39-210ENST00000568357 IFT57Q9NWB7 429 aa19.59■□□□□ 0.73
VPS39-210ENST00000568357 PIM2Q9P1W9 311 aa19.59■□□□□ 0.73
VPS39-210ENST00000568357 ZNF652Q9Y2D9 606 aa19.59■□□□□ 0.73
VPS39-210ENST00000568357 PCNTO95613 3336 aa19.59■□□□□ 0.73
VPS39-210ENST00000568357 CARMIL3Q8ND23 1372 aa19.58■□□□□ 0.73
VPS39-210ENST00000568357 ERVV-1B6SEH8 477 aa19.58■□□□□ 0.72
VPS39-210ENST00000568357 RGL2O15211 777 aa19.58■□□□□ 0.72
VPS39-210ENST00000568357 GNAI1P63096 354 aa19.58■□□□□ 0.72
VPS39-210ENST00000568357 SCN7AQ01118 1682 aa19.58■□□□□ 0.72
VPS39-210ENST00000568357 MAP3K15Q6ZN16 1313 aa19.57■□□□□ 0.72
VPS39-210ENST00000568357 CALD1Q05682 793 aaKnown RBP19.57■□□□□ 0.72
VPS39-210ENST00000568357 WWC1Q8IX03 1113 aa19.57■□□□□ 0.72
VPS39-210ENST00000568357 C16orf71Q8IYS4 520 aaPredicted RBP19.57■□□□□ 0.72
VPS39-210ENST00000568357 NIP7Q9Y221 180 aaKnown RBP eCLIP19.57■□□□□ 0.72
VPS39-210ENST00000568357 LAMB4A4D0S4 1761 aa19.57■□□□□ 0.72
VPS39-210ENST00000568357 FSTL1Q12841 308 aa19.56■□□□□ 0.72
VPS39-210ENST00000568357 CCDC27Q2M243 656 aa19.56■□□□□ 0.72
VPS39-210ENST00000568357 DUSP27Q5VZP5 1158 aa19.56■□□□□ 0.72
VPS39-210ENST00000568357 FAM9BQ8IZU0 186 aa19.56■□□□□ 0.72
VPS39-210ENST00000568357 BRIP1Q9BX63 1249 aa19.56■□□□□ 0.72
VPS39-210ENST00000568357 ZBTB3Q9H5J0 574 aa19.56■□□□□ 0.72
VPS39-210ENST00000568357 NRXN2Q9P2S2 1712 aa19.56■□□□□ 0.72
VPS39-210ENST00000568357 DALRD3Q5D0E6 543 aaKnown RBP19.55■□□□□ 0.72
VPS39-210ENST00000568357 KIF6Q6ZMV9 814 aa19.55■□□□□ 0.72
VPS39-210ENST00000568357 NBPF5PQ86XG9 351 aaPredicted RBP19.55■□□□□ 0.72
VPS39-210ENST00000568357 C2CD5Q86YS7 1000 aa19.55■□□□□ 0.72
VPS39-210ENST00000568357 CNBD1Q8NA66 436 aa19.55■□□□□ 0.72
VPS39-210ENST00000568357 AFDNP55196 1824 aaKnown RBP19.54■□□□□ 0.72
VPS39-210ENST00000568357 HOXB7P09629 217 aa19.54■□□□□ 0.72
VPS39-210ENST00000568357 C9orf131Q5VYM1 1079 aa19.54■□□□□ 0.72
VPS39-210ENST00000568357 FAM177BA6PVY3 158 aa19.53■□□□□ 0.72
VPS39-210ENST00000568357 H0YIN7 160 aa19.53■□□□□ 0.72
VPS39-210ENST00000568357 ELL2O00472 640 aaPredicted RBP19.53■□□□□ 0.72
VPS39-210ENST00000568357 NCBP3Q53F19 620 aaKnown RBP19.53■□□□□ 0.72
VPS39-210ENST00000568357 HDGFL1Q5TGJ6 251 aa19.53■□□□□ 0.72
VPS39-210ENST00000568357 COPS6Q7L5N1 327 aa19.53■□□□□ 0.72
VPS39-210ENST00000568357 C8orf58Q8NAV2 365 aa19.53■□□□□ 0.72
VPS39-210ENST00000568357 DDX21Q9NR30 783 aaKnown RBP eCLIP19.53■□□□□ 0.72
VPS39-210ENST00000568357 CHPF2Q9P2E5 772 aa19.53■□□□□ 0.72
VPS39-210ENST00000568357 SALL2Q9Y467 1007 aaPredicted RBP19.53■□□□□ 0.72
VPS39-210ENST00000568357 SBF1O95248 1867 aa19.53■□□□□ 0.72
VPS39-210ENST00000568357 BCORQ6W2J9 1755 aa19.52■□□□□ 0.72
VPS39-210ENST00000568357 NPHP1O15259 732 aa19.52■□□□□ 0.72
VPS39-210ENST00000568357 HSPA1AP0DMV8 641 aaKnown RBP19.52■□□□□ 0.72
VPS39-210ENST00000568357 HSPA1BP0DMV9 641 aaKnown RBP19.52■□□□□ 0.72
VPS39-210ENST00000568357 PDE6BP35913 854 aa19.52■□□□□ 0.72
VPS39-210ENST00000568357 AIMP1Q12904 312 aaKnown RBP19.52■□□□□ 0.72
VPS39-210ENST00000568357 TPTE2Q6XPS3 522 aa19.52■□□□□ 0.72
VPS39-210ENST00000568357 XAGE3Q8WTP9 111 aa19.52■□□□□ 0.72
VPS39-210ENST00000568357 ST5P78524 1137 aa19.51■□□□□ 0.71
VPS39-210ENST00000568357 GIGYF2Q6Y7W6 1299 aaKnown RBP19.51■□□□□ 0.71
VPS39-210ENST00000568357 ZNF34Q8IZ26 560 aa19.51■□□□□ 0.71
VPS39-210ENST00000568357 TSR2Q969E8 191 aaKnown RBP19.51■□□□□ 0.71
VPS39-210ENST00000568357 GPTP24298 496 aa19.5■□□□□ 0.71
VPS39-210ENST00000568357 RRAGCQ9HB90 399 aa19.5■□□□□ 0.71
VPS39-210ENST00000568357 TSPYL6Q8N831 410 aa19.49■□□□□ 0.71
VPS39-210ENST00000568357 TTLL6Q8N841 843 aa19.49■□□□□ 0.71
VPS39-210ENST00000568357 ZNF622Q969S3 477 aaKnown RBP eCLIP19.49■□□□□ 0.71
VPS39-210ENST00000568357 DBF4Q9UBU7 674 aaPredicted RBP19.49■□□□□ 0.71
VPS39-210ENST00000568357 PDZRN3Q9UPQ7 1066 aa19.49■□□□□ 0.71
VPS39-210ENST00000568357 UBN2Q6ZU65 1347 aa19.49■□□□□ 0.71
VPS39-210ENST00000568357 KDM2BQ8NHM5 1336 aa19.49■□□□□ 0.71
VPS39-210ENST00000568357 SUSD4Q5VX71 490 aa19.48■□□□□ 0.71
VPS39-210ENST00000568357 KLRG2A4D1S0 409 aaPredicted RBP19.47■□□□□ 0.71
VPS39-210ENST00000568357 SRGNP10124 158 aa19.47■□□□□ 0.71
VPS39-210ENST00000568357 NUTM1Q86Y26 1132 aa19.47■□□□□ 0.71
VPS39-210ENST00000568357 IL16Q14005 1332 aa19.47■□□□□ 0.71
VPS39-210ENST00000568357 GTF2E1P29083 439 aaPredicted RBP19.46■□□□□ 0.71
VPS39-210ENST00000568357 ERFEQ4G0M1 354 aa19.46■□□□□ 0.71
VPS39-210ENST00000568357 WDR63Q8IWG1 891 aa19.46■□□□□ 0.71
VPS39-210ENST00000568357 HYPKQ9NX55 129 aa19.46■□□□□ 0.71
VPS39-210ENST00000568357 RNF181Q9P0P0 153 aa19.46■□□□□ 0.71
VPS39-210ENST00000568357 SMC1BQ8NDV3 1235 aa19.45■□□□□ 0.7
VPS39-210ENST00000568357 NYXQ9GZU5 481 aa19.45■□□□□ 0.7
VPS39-210ENST00000568357 ANKRD31Q8N7Z5 1873 aa19.44■□□□□ 0.7
VPS39-210ENST00000568357 TCIRG1Q13488 830 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms