RNA–Protein interactions for RNA: ENST00000567549.2

LINC01238-205, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

BASIC

Gene LINC01238, Length 1,107 nt, Biotype antisense RNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-205ENST00000567549 GLTPD2A6NH11 291 aa24.55■■□□□ 1.52
LINC01238-205ENST00000567549 NFE2L2Q16236 605 aa24.55■■□□□ 1.52
LINC01238-205ENST00000567549 CEP350Q5VT06 3117 aa24.55■■□□□ 1.52
LINC01238-205ENST00000567549 DLG5Q8TDM6 1919 aa24.55■■□□□ 1.52
LINC01238-205ENST00000567549 VEGFAP15692 232 aaPredicted RBP24.54■■□□□ 1.52
LINC01238-205ENST00000567549 SMC1BQ8NDV3 1235 aa24.54■■□□□ 1.52
LINC01238-205ENST00000567549 RRAGCQ9HB90 399 aa24.54■■□□□ 1.52
LINC01238-205ENST00000567549 NIP7Q9Y221 180 aaKnown RBP eCLIP24.53■■□□□ 1.52
LINC01238-205ENST00000567549 LTBP3Q9NS15 1303 aa24.53■■□□□ 1.52
LINC01238-205ENST00000567549 CCDC88AQ3V6T2 1871 aa24.53■■□□□ 1.52
LINC01238-205ENST00000567549 TIAM2Q8IVF5 1701 aa24.52■■□□□ 1.52
LINC01238-205ENST00000567549 C21orf2O43822 256 aa24.52■■□□□ 1.52
LINC01238-205ENST00000567549 SRGNP10124 158 aa24.52■■□□□ 1.52
LINC01238-205ENST00000567549 GTF2E1P29083 439 aaPredicted RBP24.52■■□□□ 1.52
LINC01238-205ENST00000567549 LMOD3Q0VAK6 560 aa24.52■■□□□ 1.52
LINC01238-205ENST00000567549 TAOK3Q9H2K8 898 aa24.52■■□□□ 1.52
LINC01238-205ENST00000567549 PLEKHF1Q96S99 279 aa24.51■■□□□ 1.51
LINC01238-205ENST00000567549 NYXQ9GZU5 481 aa24.51■■□□□ 1.51
LINC01238-205ENST00000567549 ARFGEF2Q9Y6D5 1785 aa24.51■■□□□ 1.51
LINC01238-205ENST00000567549 COL11A2P13942 1736 aaPredicted RBP24.5■■□□□ 1.51
LINC01238-205ENST00000567549 KDM3BQ7LBC6 1761 aa24.5■■□□□ 1.51
LINC01238-205ENST00000567549 PRAMEF22A3QJZ6 481 aa24.5■■□□□ 1.51
LINC01238-205ENST00000567549 NFKBIEO00221 500 aa24.5■■□□□ 1.51
LINC01238-205ENST00000567549 NPR1P16066 1061 aa24.5■■□□□ 1.51
LINC01238-205ENST00000567549 PIP4K2AP48426 406 aaPredicted RBP24.5■■□□□ 1.51
LINC01238-205ENST00000567549 KIF6Q6ZMV9 814 aa24.5■■□□□ 1.51
LINC01238-205ENST00000567549 FER1L6Q2WGJ9 1857 aa24.49■■□□□ 1.51
LINC01238-205ENST00000567549 DICER1Q9UPY3 1922 aaKnown RBP24.49■■□□□ 1.51
LINC01238-205ENST00000567549 ERVV-1B6SEH8 477 aa24.49■■□□□ 1.51
LINC01238-205ENST00000567549 ERFEQ4G0M1 354 aa24.49■■□□□ 1.51
LINC01238-205ENST00000567549 PRPF40BQ6NWY9 871 aaKnown RBP24.49■■□□□ 1.51
LINC01238-205ENST00000567549 ERBB4Q15303 1308 aa24.48■■□□□ 1.51
LINC01238-205ENST00000567549 CCDC24Q8N4L8 307 aa24.48■■□□□ 1.51
LINC01238-205ENST00000567549 NBPF26B4DH59 902 aa24.47■■□□□ 1.51
LINC01238-205ENST00000567549 ALDH1B1P30837 517 aa24.47■■□□□ 1.51
LINC01238-205ENST00000567549 CCDC93Q567U6 631 aa24.47■■□□□ 1.51
LINC01238-205ENST00000567549 NBPF10Q6P3W6 841 aaKnown RBP24.47■■□□□ 1.51
LINC01238-205ENST00000567549 NBPF15Q8N660 670 aa24.47■■□□□ 1.51
LINC01238-205ENST00000567549 BABAM1Q9NWV8 329 aa24.47■■□□□ 1.51
LINC01238-205ENST00000567549 MIS18AQ9NYP9 233 aa24.47■■□□□ 1.51
LINC01238-205ENST00000567549 ZNF219Q9P2Y4 722 aaPredicted RBP24.47■■□□□ 1.51
LINC01238-205ENST00000567549 WDR90Q96KV7 1748 aa24.47■■□□□ 1.51
LINC01238-205ENST00000567549 EIF4A1P60842 406 aaKnown RBP24.46■■□□□ 1.51
LINC01238-205ENST00000567549 CACNA1SQ13698 1873 aa24.46■■□□□ 1.51
LINC01238-205ENST00000567549 KLRG2A4D1S0 409 aaPredicted RBP24.44■■□□□ 1.5
LINC01238-205ENST00000567549 MAP3K15Q6ZN16 1313 aa24.43■■□□□ 1.5
LINC01238-205ENST00000567549 SLX4Q8IY92 1834 aa24.43■■□□□ 1.5
LINC01238-205ENST00000567549 RTKN2Q8IZC4 609 aa24.43■■□□□ 1.5
LINC01238-205ENST00000567549 TSPYL4Q9UJ04 414 aa24.43■■□□□ 1.5
LINC01238-205ENST00000567549 MYBBP1AQ9BQG0 1328 aaKnown RBP24.42■■□□□ 1.5
LINC01238-205ENST00000567549 RRP7AQ9Y3A4 280 aaKnown RBP24.42■■□□□ 1.5
LINC01238-205ENST00000567549 IBTKQ9P2D0 1353 aaPredicted RBP24.42■■□□□ 1.5
LINC01238-205ENST00000567549 RIPK4P57078 832 aa24.41■■□□□ 1.5
LINC01238-205ENST00000567549 GRIPAP1Q4V328 841 aa24.41■■□□□ 1.5
LINC01238-205ENST00000567549 NGEFQ8N5V2 710 aa24.41■■□□□ 1.5
LINC01238-205ENST00000567549 NUP98P52948 1817 aa24.4■■□□□ 1.5
LINC01238-205ENST00000567549 IQCA1LA6NCM1 817 aa24.4■■□□□ 1.5
LINC01238-205ENST00000567549 FAM177BA6PVY3 158 aa24.39■■□□□ 1.49
LINC01238-205ENST00000567549 MYL6BP14649 208 aa24.39■■□□□ 1.49
LINC01238-205ENST00000567549 PRELPP51888 382 aa24.39■■□□□ 1.49
LINC01238-205ENST00000567549 WDR43Q15061 677 aaKnown RBP eCLIP24.39■■□□□ 1.49
LINC01238-205ENST00000567549 HLFQ16534 295 aa24.39■■□□□ 1.49
LINC01238-205ENST00000567549 CC2D2BQ6DHV5 1058 aa24.39■■□□□ 1.49
LINC01238-205ENST00000567549 FKBP4Q02790 459 aaKnown RBP eCLIP24.38■■□□□ 1.49
LINC01238-205ENST00000567549 PARP10Q53GL7 1025 aa24.38■■□□□ 1.49
LINC01238-205ENST00000567549 PPP1R42Q7Z4L9 355 aa24.38■■□□□ 1.49
LINC01238-205ENST00000567549 RPGRQ92834 1020 aaKnown RBP24.38■■□□□ 1.49
LINC01238-205ENST00000567549 TMX4Q9H1E5 349 aaPredicted RBP24.38■■□□□ 1.49
LINC01238-205ENST00000567549 RIC1Q4ADV7 1423 aa24.37■■□□□ 1.49
LINC01238-205ENST00000567549 DNAJC5GQ8N7S2 189 aa24.37■■□□□ 1.49
LINC01238-205ENST00000567549 KLRG1Q96E93 195 aa24.37■■□□□ 1.49
LINC01238-205ENST00000567549 THUMPD2Q9BTF0 503 aaKnown RBP24.37■■□□□ 1.49
LINC01238-205ENST00000567549 ZEB1P37275 1124 aaPredicted RBP24.36■■□□□ 1.49
LINC01238-205ENST00000567549 IFFO2Q5TF58 517 aa24.36■■□□□ 1.49
LINC01238-205ENST00000567549 C7orf43Q8WVR3 580 aa24.36■■□□□ 1.49
LINC01238-205ENST00000567549 TMPOP42166 694 aaKnown RBP24.35■■□□□ 1.49
LINC01238-205ENST00000567549 GIGYF2Q6Y7W6 1299 aaKnown RBP24.35■■□□□ 1.49
LINC01238-205ENST00000567549 DDX10Q13206 875 aaKnown RBP24.34■■□□□ 1.49
LINC01238-205ENST00000567549 CRY2Q49AN0 593 aa24.34■■□□□ 1.49
LINC01238-205ENST00000567549 HSP90AB3PQ58FF7 597 aa24.34■■□□□ 1.49
LINC01238-205ENST00000567549 ZBTB3Q9H5J0 574 aa24.34■■□□□ 1.49
LINC01238-205ENST00000567549 RNF123Q5XPI4 1314 aa24.34■■□□□ 1.49
LINC01238-205ENST00000567549 TTLL7Q6ZT98 887 aa24.32■■□□□ 1.48
LINC01238-205ENST00000567549 JDP2Q8WYK2 163 aa24.32■■□□□ 1.48
LINC01238-205ENST00000567549 RBM17Q96I25 401 aaKnown RBP24.32■■□□□ 1.48
LINC01238-205ENST00000567549 SCN4AP35499 1836 aa24.32■■□□□ 1.48
LINC01238-205ENST00000567549 EIF2S2P20042 333 aaKnown RBP24.31■■□□□ 1.48
LINC01238-205ENST00000567549 RUNDC1Q96C34 613 aa24.31■■□□□ 1.48
LINC01238-205ENST00000567549 PSMD1Q99460 953 aa24.31■■□□□ 1.48
LINC01238-205ENST00000567549 GPTP24298 496 aa24.3■■□□□ 1.48
LINC01238-205ENST00000567549 CHADLQ6NUI6 762 aa24.3■■□□□ 1.48
LINC01238-205ENST00000567549 NUTM1Q86Y26 1132 aa24.3■■□□□ 1.48
LINC01238-205ENST00000567549 ZNF34Q8IZ26 560 aa24.3■■□□□ 1.48
LINC01238-205ENST00000567549 JMYQ8N9B5 988 aa24.3■■□□□ 1.48
LINC01238-205ENST00000567549 L3MBTL3Q96JM7 780 aaPredicted RBP24.3■■□□□ 1.48
LINC01238-205ENST00000567549 DDNO94850 711 aaPredicted RBP24.29■■□□□ 1.48
LINC01238-205ENST00000567549 HOXA10P31260 410 aaPredicted RBP24.29■■□□□ 1.48
LINC01238-205ENST00000567549 NLRP3Q96P20 1036 aa24.29■■□□□ 1.48
LINC01238-205ENST00000567549 IARSP41252 1262 aaKnown RBP24.28■■□□□ 1.48
LINC01238-205ENST00000567549 CRAMP1Q96RY5 1269 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms