RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 ANXA1P04083 346 aa14.17□□□□□ -0.14
CLN3-224ENST00000566816 MTFR1LQ9H019 292 aa14.17□□□□□ -0.14
CLN3-224ENST00000566816 BCL2L12Q9HB09 334 aa14.17□□□□□ -0.14
CLN3-224ENST00000566816 SMC4Q9NTJ3 1288 aa14.17□□□□□ -0.14
CLN3-224ENST00000566816 QSER1Q2KHR3 1735 aa14.17□□□□□ -0.14
CLN3-224ENST00000566816 KIF16BQ96L93 1317 aa14.16□□□□□ -0.14
CLN3-224ENST00000566816 UBR3Q6ZT12 1888 aa14.16□□□□□ -0.14
CLN3-224ENST00000566816 TM4SF1P30408 202 aa14.16□□□□□ -0.14
CLN3-224ENST00000566816 USPL1Q5W0Q7 1092 aa14.16□□□□□ -0.14
CLN3-224ENST00000566816 G2E3Q7L622 706 aa14.16□□□□□ -0.14
CLN3-224ENST00000566816 RCAN3Q9UKA8 241 aa14.16□□□□□ -0.14
CLN3-224ENST00000566816 ZNF330Q9Y3S2 320 aaPredicted RBP14.16□□□□□ -0.14
CLN3-224ENST00000566816 CACNA1FO60840 1977 aa14.15□□□□□ -0.14
CLN3-224ENST00000566816 IBTKQ9P2D0 1353 aaPredicted RBP14.15□□□□□ -0.14
CLN3-224ENST00000566816 TCERG1O14776 1098 aaKnown RBP14.15□□□□□ -0.14
CLN3-224ENST00000566816 MSH5O43196 834 aa14.15□□□□□ -0.14
CLN3-224ENST00000566816 AIMP1Q12904 312 aaKnown RBP14.15□□□□□ -0.14
CLN3-224ENST00000566816 TCIRG1Q13488 830 aa14.15□□□□□ -0.14
CLN3-224ENST00000566816 SMIM5Q71RC9 77 aa14.15□□□□□ -0.14
CLN3-224ENST00000566816 RIC3Q7Z5B4 369 aa14.15□□□□□ -0.14
CLN3-224ENST00000566816 PI4KAP2A4QPH2 592 aa14.14□□□□□ -0.15
CLN3-224ENST00000566816 FKBP5Q13451 457 aaPredicted RBP14.14□□□□□ -0.15
CLN3-224ENST00000566816 ZNF34Q8IZ26 560 aa14.14□□□□□ -0.15
CLN3-224ENST00000566816 PI4KAP1Q8N8J0 262 aa14.14□□□□□ -0.15
CLN3-224ENST00000566816 ARXQ96QS3 562 aa14.14□□□□□ -0.15
CLN3-224ENST00000566816 METTL22Q9BUU2 404 aaPredicted RBP14.14□□□□□ -0.15
CLN3-224ENST00000566816 API5Q9BZZ5 524 aaKnown RBP14.14□□□□□ -0.15
CLN3-224ENST00000566816 SRP68Q9UHB9 627 aaKnown RBP14.14□□□□□ -0.15
CLN3-224ENST00000566816 PSDA5PKW4 1024 aaPredicted RBP14.13□□□□□ -0.15
CLN3-224ENST00000566816 FKBP8Q14318 412 aa14.13□□□□□ -0.15
CLN3-224ENST00000566816 HLFQ16534 295 aa14.13□□□□□ -0.15
CLN3-224ENST00000566816 PARP10Q53GL7 1025 aa14.13□□□□□ -0.15
CLN3-224ENST00000566816 DNAAF4Q8WXU2 420 aa14.13□□□□□ -0.15
CLN3-224ENST00000566816 ISCA1Q9BUE6 129 aa14.13□□□□□ -0.15
CLN3-224ENST00000566816 PDGFDQ9GZP0 370 aaPredicted RBP14.13□□□□□ -0.15
CLN3-224ENST00000566816 NOB1Q9ULX3 412 aaKnown RBP14.13□□□□□ -0.15
CLN3-224ENST00000566816 ATP10DQ9P241 1426 aa14.13□□□□□ -0.15
CLN3-224ENST00000566816 BCAR3O75815 825 aa14.12□□□□□ -0.15
CLN3-224ENST00000566816 MS4A1P11836 297 aa14.12□□□□□ -0.15
CLN3-224ENST00000566816 SETDB2Q96T68 719 aa14.12□□□□□ -0.15
CLN3-224ENST00000566816 ZBTB3Q9H5J0 574 aa14.12□□□□□ -0.15
CLN3-224ENST00000566816 MAP3K2Q9Y2U5 619 aa14.12□□□□□ -0.15
CLN3-224ENST00000566816 NEXNQ0ZGT2 675 aa14.11□□□□□ -0.15
CLN3-224ENST00000566816 NFIXQ14938 502 aa14.11□□□□□ -0.15
CLN3-224ENST00000566816 ATF7IPQ6VMQ6 1270 aa14.11□□□□□ -0.15
CLN3-224ENST00000566816 CCDC191Q8NCU4 936 aa14.11□□□□□ -0.15
CLN3-224ENST00000566816 LINS1Q8NG48 757 aa14.11□□□□□ -0.15
CLN3-224ENST00000566816 SGIP1Q9BQI5 828 aa14.11□□□□□ -0.15
CLN3-224ENST00000566816 BCL2L13Q9BXK5 485 aa14.11□□□□□ -0.15
CLN3-224ENST00000566816 SPON1Q9HCB6 807 aa14.11□□□□□ -0.15
CLN3-224ENST00000566816 RNF123Q5XPI4 1314 aa14.11□□□□□ -0.15
CLN3-224ENST00000566816 ADCY9O60503 1353 aa14.1□□□□□ -0.15
CLN3-224ENST00000566816 POLD1P28340 1107 aa14.1□□□□□ -0.15
CLN3-224ENST00000566816 ZKSCAN2Q63HK3 967 aa14.1□□□□□ -0.15
CLN3-224ENST00000566816 TBC1D9BQ66K14 1250 aa14.1□□□□□ -0.15
CLN3-224ENST00000566816 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.1□□□□□ -0.15
CLN3-224ENST00000566816 NIP7Q9Y221 180 aaKnown RBP eCLIP14.1□□□□□ -0.15
CLN3-224ENST00000566816 ALDH1L1O75891 902 aa14.09□□□□□ -0.15
CLN3-224ENST00000566816 ZBTB7AO95365 584 aa14.09□□□□□ -0.15
CLN3-224ENST00000566816 PTGER2P43116 358 aa14.09□□□□□ -0.15
CLN3-224ENST00000566816 BEND3Q5T5X7 828 aa14.09□□□□□ -0.15
CLN3-224ENST00000566816 TPTE2Q6XPS3 522 aa14.09□□□□□ -0.15
CLN3-224ENST00000566816 PPP1R42Q7Z4L9 355 aa14.09□□□□□ -0.15
CLN3-224ENST00000566816 NLRP10Q86W26 655 aa14.09□□□□□ -0.15
CLN3-224ENST00000566816 NYXQ9GZU5 481 aa14.09□□□□□ -0.15
CLN3-224ENST00000566816 PARP3Q9Y6F1 533 aa14.09□□□□□ -0.15
CLN3-224ENST00000566816 CARMIL3Q8ND23 1372 aa14.09□□□□□ -0.15
CLN3-224ENST00000566816 POLRMTO00411 1230 aaKnown RBP14.08□□□□□ -0.16
CLN3-224ENST00000566816 MMP10P09238 476 aa14.08□□□□□ -0.16
CLN3-224ENST00000566816 CCT4P50991 539 aaKnown RBP14.08□□□□□ -0.16
CLN3-224ENST00000566816 CASZ1Q86V15 1759 aa14.08□□□□□ -0.16
CLN3-224ENST00000566816 TUBGCP6Q96RT7 1819 aa14.07□□□□□ -0.16
CLN3-224ENST00000566816 SERPINB2P05120 415 aa14.07□□□□□ -0.16
CLN3-224ENST00000566816 IGKV5-2P06315 115 aa14.07□□□□□ -0.16
CLN3-224ENST00000566816 TRIM27P14373 513 aa14.07□□□□□ -0.16
CLN3-224ENST00000566816 HSP90B1P14625 803 aaKnown RBP14.07□□□□□ -0.16
CLN3-224ENST00000566816 PDE3AQ14432 1141 aa14.07□□□□□ -0.16
CLN3-224ENST00000566816 SLC10A5Q5PT55 438 aa14.07□□□□□ -0.16
CLN3-224ENST00000566816 INTS3Q68E01 1043 aaKnown RBP14.07□□□□□ -0.16
CLN3-224ENST00000566816 MYD88Q99836 296 aa14.07□□□□□ -0.16
CLN3-224ENST00000566816 CWC25Q9NXE8 425 aaPredicted RBP14.07□□□□□ -0.16
CLN3-224ENST00000566816 ATF5Q9Y2D1 282 aaPredicted RBP14.07□□□□□ -0.16
CLN3-224ENST00000566816 NEURL1BA8MQ27 555 aa14.06□□□□□ -0.16
CLN3-224ENST00000566816 F6X3S4 739 aa14.06□□□□□ -0.16
CLN3-224ENST00000566816 DDR1Q08345 913 aa14.06□□□□□ -0.16
CLN3-224ENST00000566816 FRAT1Q92837 279 aaPredicted RBP14.06□□□□□ -0.16
CLN3-224ENST00000566816 UTP14AQ9BVJ6 771 aaKnown RBP14.06□□□□□ -0.16
CLN3-224ENST00000566816 SRCIN1Q9C0H9 1055 aa14.06□□□□□ -0.16
CLN3-224ENST00000566816 PDZRN3Q9UPQ7 1066 aa14.06□□□□□ -0.16
CLN3-224ENST00000566816 ABCC4O15439 1325 aa14.06□□□□□ -0.16
CLN3-224ENST00000566816 UBN2Q6ZU65 1347 aa14.06□□□□□ -0.16
CLN3-224ENST00000566816 C4AP0C0L4 1744 aa14.06□□□□□ -0.16
CLN3-224ENST00000566816 ATP5J2-PTCD1G3V325 749 aa14.05□□□□□ -0.16
CLN3-224ENST00000566816 PCCAP05165 728 aaPredicted RBP14.05□□□□□ -0.16
CLN3-224ENST00000566816 GCKRQ14397 625 aa14.05□□□□□ -0.16
CLN3-224ENST00000566816 SUSD4Q5VX71 490 aa14.05□□□□□ -0.16
CLN3-224ENST00000566816 MSL1Q68DK7 614 aa14.05□□□□□ -0.16
CLN3-224ENST00000566816 NBPF5PQ86XG9 351 aaPredicted RBP14.05□□□□□ -0.16
CLN3-224ENST00000566816 DZIP1LQ8IYY4 767 aaKnown RBP14.05□□□□□ -0.16
CLN3-224ENST00000566816 ZBTB38Q8NAP3 1195 aaPredicted RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms