RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 RASSF7Q02833 373 aa19.66■□□□□ 0.74
CLN3-222ENST00000566083 NBPF10Q6P3W6 841 aaKnown RBP19.66■□□□□ 0.74
CLN3-222ENST00000566083 NBPF15Q8N660 670 aa19.66■□□□□ 0.74
CLN3-222ENST00000566083 GLTPD2A6NH11 291 aa19.65■□□□□ 0.74
CLN3-222ENST00000566083 PIP4K2AP48426 406 aaPredicted RBP19.65■□□□□ 0.74
CLN3-222ENST00000566083 DPY19L2Q6NUT2 758 aa19.65■□□□□ 0.74
CLN3-222ENST00000566083 MIS18AQ9NYP9 233 aa19.65■□□□□ 0.74
CLN3-222ENST00000566083 NIP7Q9Y221 180 aaKnown RBP eCLIP19.65■□□□□ 0.74
CLN3-222ENST00000566083 BCORQ6W2J9 1755 aa19.65■□□□□ 0.74
CLN3-222ENST00000566083 ERVV-1B6SEH8 477 aa19.64■□□□□ 0.73
CLN3-222ENST00000566083 EIF4A1P60842 406 aaKnown RBP19.64■□□□□ 0.73
CLN3-222ENST00000566083 LMOD3Q0VAK6 560 aa19.64■□□□□ 0.73
CLN3-222ENST00000566083 BABAM1Q9NWV8 329 aa19.64■□□□□ 0.73
CLN3-222ENST00000566083 LTBP3Q9NS15 1303 aa19.64■□□□□ 0.73
CLN3-222ENST00000566083 NFKBIEO00221 500 aa19.63■□□□□ 0.73
CLN3-222ENST00000566083 C21orf2O43822 256 aa19.63■□□□□ 0.73
CLN3-222ENST00000566083 RRAGCQ9HB90 399 aa19.63■□□□□ 0.73
CLN3-222ENST00000566083 ANKRD31Q8N7Z5 1873 aa19.63■□□□□ 0.73
CLN3-222ENST00000566083 KLRG2A4D1S0 409 aaPredicted RBP19.62■□□□□ 0.73
CLN3-222ENST00000566083 VEGFAP15692 232 aaPredicted RBP19.62■□□□□ 0.73
CLN3-222ENST00000566083 NPR1P16066 1061 aa19.62■□□□□ 0.73
CLN3-222ENST00000566083 GTF2E1P29083 439 aaPredicted RBP19.62■□□□□ 0.73
CLN3-222ENST00000566083 ERBB4Q15303 1308 aa19.62■□□□□ 0.73
CLN3-222ENST00000566083 CCDC24Q8N4L8 307 aa19.62■□□□□ 0.73
CLN3-222ENST00000566083 TAOK3Q9H2K8 898 aa19.62■□□□□ 0.73
CLN3-222ENST00000566083 DLG5Q8TDM6 1919 aa19.62■□□□□ 0.73
CLN3-222ENST00000566083 TNRC6CQ9HCJ0 1690 aaKnown RBP19.61■□□□□ 0.73
CLN3-222ENST00000566083 PRPF40BQ6NWY9 871 aaKnown RBP19.61■□□□□ 0.73
CLN3-222ENST00000566083 NYXQ9GZU5 481 aa19.61■□□□□ 0.73
CLN3-222ENST00000566083 RIPK4P57078 832 aa19.6■□□□□ 0.73
CLN3-222ENST00000566083 KIF6Q6ZMV9 814 aa19.6■□□□□ 0.73
CLN3-222ENST00000566083 SMC1BQ8NDV3 1235 aa19.6■□□□□ 0.73
CLN3-222ENST00000566083 MYBBP1AQ9BQG0 1328 aaKnown RBP19.6■□□□□ 0.73
CLN3-222ENST00000566083 ERFEQ4G0M1 354 aa19.59■□□□□ 0.73
CLN3-222ENST00000566083 LAMB4A4D0S4 1761 aa19.59■□□□□ 0.73
CLN3-222ENST00000566083 MAP3K15Q6ZN16 1313 aa19.59■□□□□ 0.73
CLN3-222ENST00000566083 ALDH1B1P30837 517 aa19.59■□□□□ 0.73
CLN3-222ENST00000566083 ZNF219Q9P2Y4 722 aaPredicted RBP19.59■□□□□ 0.73
CLN3-222ENST00000566083 TSPYL4Q9UJ04 414 aa19.59■□□□□ 0.73
CLN3-222ENST00000566083 RRP7AQ9Y3A4 280 aaKnown RBP19.59■□□□□ 0.73
CLN3-222ENST00000566083 KDM3BQ7LBC6 1761 aa19.58■□□□□ 0.73
CLN3-222ENST00000566083 DDX10Q13206 875 aaKnown RBP19.58■□□□□ 0.72
CLN3-222ENST00000566083 THUMPD2Q9BTF0 503 aaKnown RBP19.58■□□□□ 0.72
CLN3-222ENST00000566083 PRELPP51888 382 aa19.57■□□□□ 0.72
CLN3-222ENST00000566083 HLFQ16534 295 aa19.57■□□□□ 0.72
CLN3-222ENST00000566083 CCDC93Q567U6 631 aa19.57■□□□□ 0.72
CLN3-222ENST00000566083 FER1L6Q2WGJ9 1857 aa19.57■□□□□ 0.72
CLN3-222ENST00000566083 COL11A2P13942 1736 aaPredicted RBP19.56■□□□□ 0.72
CLN3-222ENST00000566083 CCDC88AQ3V6T2 1871 aa19.56■□□□□ 0.72
CLN3-222ENST00000566083 TMPOP42166 694 aaKnown RBP19.56■□□□□ 0.72
CLN3-222ENST00000566083 IFFO2Q5TF58 517 aa19.56■□□□□ 0.72
CLN3-222ENST00000566083 RTKN2Q8IZC4 609 aa19.56■□□□□ 0.72
CLN3-222ENST00000566083 NGEFQ8N5V2 710 aa19.56■□□□□ 0.72
CLN3-222ENST00000566083 C7orf43Q8WVR3 580 aa19.55■□□□□ 0.72
CLN3-222ENST00000566083 IBTKQ9P2D0 1353 aaPredicted RBP19.55■□□□□ 0.72
CLN3-222ENST00000566083 SLX4Q8IY92 1834 aa19.55■□□□□ 0.72
CLN3-222ENST00000566083 MYL6BP14649 208 aa19.54■□□□□ 0.72
CLN3-222ENST00000566083 WDR43Q15061 677 aaKnown RBP eCLIP19.54■□□□□ 0.72
CLN3-222ENST00000566083 DICER1Q9UPY3 1922 aaKnown RBP19.54■□□□□ 0.72
CLN3-222ENST00000566083 FAM177BA6PVY3 158 aa19.53■□□□□ 0.72
CLN3-222ENST00000566083 GRIPAP1Q4V328 841 aa19.53■□□□□ 0.72
CLN3-222ENST00000566083 CC2D2BQ6DHV5 1058 aa19.53■□□□□ 0.72
CLN3-222ENST00000566083 ARFGEF2Q9Y6D5 1785 aa19.53■□□□□ 0.72
CLN3-222ENST00000566083 PARP10Q53GL7 1025 aa19.52■□□□□ 0.72
CLN3-222ENST00000566083 GIGYF2Q6Y7W6 1299 aaKnown RBP19.52■□□□□ 0.72
CLN3-222ENST00000566083 DNAJC5GQ8N7S2 189 aa19.52■□□□□ 0.72
CLN3-222ENST00000566083 TIAM2Q8IVF5 1701 aa19.52■□□□□ 0.71
CLN3-222ENST00000566083 FKBP4Q02790 459 aaKnown RBP eCLIP19.51■□□□□ 0.71
CLN3-222ENST00000566083 CRY2Q49AN0 593 aa19.51■□□□□ 0.71
CLN3-222ENST00000566083 TTLL7Q6ZT98 887 aa19.51■□□□□ 0.71
CLN3-222ENST00000566083 PPP1R42Q7Z4L9 355 aa19.51■□□□□ 0.71
CLN3-222ENST00000566083 RUNDC1Q96C34 613 aa19.51■□□□□ 0.71
CLN3-222ENST00000566083 RIC1Q4ADV7 1423 aa19.51■□□□□ 0.71
CLN3-222ENST00000566083 ZBTB3Q9H5J0 574 aa19.51■□□□□ 0.71
CLN3-222ENST00000566083 NUP98P52948 1817 aa19.5■□□□□ 0.71
CLN3-222ENST00000566083 IQCA1LA6NCM1 817 aa19.5■□□□□ 0.71
CLN3-222ENST00000566083 EIF2S2P20042 333 aaKnown RBP19.5■□□□□ 0.71
CLN3-222ENST00000566083 ZNF34Q8IZ26 560 aa19.5■□□□□ 0.71
CLN3-222ENST00000566083 RPGRQ92834 1020 aaKnown RBP19.5■□□□□ 0.71
CLN3-222ENST00000566083 WDR90Q96KV7 1748 aa19.5■□□□□ 0.71
CLN3-222ENST00000566083 HSP90AB3PQ58FF7 597 aa19.49■□□□□ 0.71
CLN3-222ENST00000566083 RNF123Q5XPI4 1314 aa19.48■□□□□ 0.71
CLN3-222ENST00000566083 CHL1O00533 1208 aa19.48■□□□□ 0.71
CLN3-222ENST00000566083 GPTP24298 496 aa19.48■□□□□ 0.71
CLN3-222ENST00000566083 HOXA10P31260 410 aaPredicted RBP19.48■□□□□ 0.71
CLN3-222ENST00000566083 NUTM1Q86Y26 1132 aa19.48■□□□□ 0.71
CLN3-222ENST00000566083 KLRG1Q96E93 195 aa19.48■□□□□ 0.71
CLN3-222ENST00000566083 POTECB2RU33 542 aa19.47■□□□□ 0.71
CLN3-222ENST00000566083 CACNA1SQ13698 1873 aa19.47■□□□□ 0.71
CLN3-222ENST00000566083 PDIA6Q15084 440 aa19.47■□□□□ 0.71
CLN3-222ENST00000566083 NEUROD2Q15784 382 aa19.47■□□□□ 0.71
CLN3-222ENST00000566083 SUSD4Q5VX71 490 aa19.47■□□□□ 0.71
CLN3-222ENST00000566083 RBM17Q96I25 401 aaKnown RBP19.47■□□□□ 0.71
CLN3-222ENST00000566083 PSMD1Q99460 953 aa19.47■□□□□ 0.71
CLN3-222ENST00000566083 TMX4Q9H1E5 349 aaPredicted RBP19.47■□□□□ 0.71
CLN3-222ENST00000566083 HOXB7P09629 217 aa19.46■□□□□ 0.71
CLN3-222ENST00000566083 L3MBTL3Q96JM7 780 aaPredicted RBP19.46■□□□□ 0.71
CLN3-222ENST00000566083 CRAMP1Q96RY5 1269 aa19.46■□□□□ 0.71
CLN3-222ENST00000566083 UBN2Q6ZU65 1347 aa19.46■□□□□ 0.71
CLN3-222ENST00000566083 DDNO94850 711 aaPredicted RBP19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms