RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 PA2G4Q9UQ80 394 aaKnown RBP12.36□□□□□ -0.43
USB1-212ENST00000566082 SNX14Q9Y5W7 946 aa12.36□□□□□ -0.43
USB1-212ENST00000566082 POLR3GO15318 223 aaPredicted RBP12.36□□□□□ -0.43
USB1-212ENST00000566082 URI1O94763 535 aaPredicted RBP12.36□□□□□ -0.43
USB1-212ENST00000566082 SOS1Q07889 1333 aaPredicted RBP12.36□□□□□ -0.43
USB1-212ENST00000566082 CFAP100Q494V2 611 aa12.36□□□□□ -0.43
USB1-212ENST00000566082 MPRIPQ6WCQ1 1025 aa12.36□□□□□ -0.43
USB1-212ENST00000566082 RAPGEF4Q8WZA2 1011 aa12.36□□□□□ -0.43
USB1-212ENST00000566082 PAXBP1Q9Y5B6 917 aa12.36□□□□□ -0.43
USB1-212ENST00000566082 ISM2Q6H9L7 571 aa12.35□□□□□ -0.43
USB1-212ENST00000566082 PHAXQ9H814 394 aaKnown RBP12.35□□□□□ -0.43
USB1-212ENST00000566082 NLRP2Q9NX02 1062 aa12.35□□□□□ -0.43
USB1-212ENST00000566082 ABCC1P33527 1531 aa12.35□□□□□ -0.43
USB1-212ENST00000566082 HOOK1Q9UJC3 728 aaKnown RBP12.35□□□□□ -0.43
USB1-212ENST00000566082 TTC21BQ7Z4L5 1316 aa12.35□□□□□ -0.43
USB1-212ENST00000566082 PIK3R4Q99570 1358 aa12.35□□□□□ -0.43
USB1-212ENST00000566082 CCAR1Q8IX12 1150 aaKnown RBP12.35□□□□□ -0.43
USB1-212ENST00000566082 CHPF2Q9P2E5 772 aa12.35□□□□□ -0.43
USB1-212ENST00000566082 ADCY10Q96PN6 1610 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 BRPF1P55201 1214 aaPredicted RBP12.34□□□□□ -0.43
USB1-212ENST00000566082 SKIDA1Q1XH10 827 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 TMCO3Q6UWJ1 677 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 TMC6Q7Z403 805 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 GTPBP4Q9BZE4 634 aaKnown RBP12.34□□□□□ -0.43
USB1-212ENST00000566082 AKAP17AQ02040 695 aaKnown RBP12.34□□□□□ -0.43
USB1-212ENST00000566082 HSP90B2PQ58FF3 399 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 BRF1Q92994 677 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 MAP3K2Q9Y2U5 619 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 NPHP3Q7Z494 1330 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 NPATQ14207 1427 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 YTHDC2Q9H6S0 1430 aaKnown RBP12.34□□□□□ -0.43
USB1-212ENST00000566082 TRPM2O94759 1503 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 SGSM2O43147 1006 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 STX1AQ16623 288 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 UNC5CLQ8IV45 518 aa12.34□□□□□ -0.43
USB1-212ENST00000566082 CCP110O43303 1012 aa12.33□□□□□ -0.44
USB1-212ENST00000566082 DHX16O60231 1041 aaKnown RBP12.33□□□□□ -0.44
USB1-212ENST00000566082 FKBP4Q02790 459 aaKnown RBP eCLIP12.33□□□□□ -0.44
USB1-212ENST00000566082 SNW1Q13573 536 aaKnown RBP12.33□□□□□ -0.44
USB1-212ENST00000566082 TMX1Q9H3N1 280 aa12.33□□□□□ -0.44
USB1-212ENST00000566082 ATP7AQ04656 1500 aa12.33□□□□□ -0.44
USB1-212ENST00000566082 UHRF1BP1LA0JNW5 1464 aa12.33□□□□□ -0.44
USB1-212ENST00000566082 HSPA4P34932 840 aa12.33□□□□□ -0.44
USB1-212ENST00000566082 SAFBQ15424 915 aaKnown RBP eCLIP12.33□□□□□ -0.44
USB1-212ENST00000566082 KRT222Q8N1A0 295 aa12.33□□□□□ -0.44
USB1-212ENST00000566082 JARID2Q92833 1246 aaPredicted RBP12.33□□□□□ -0.44
USB1-212ENST00000566082 KIF2AO00139 706 aaPredicted RBP12.33□□□□□ -0.44
USB1-212ENST00000566082 TSR1Q2NL82 804 aaKnown RBP12.33□□□□□ -0.44
USB1-212ENST00000566082 NEK1Q96PY6 1258 aa12.33□□□□□ -0.44
USB1-212ENST00000566082 NEMFO60524 1076 aa12.32□□□□□ -0.44
USB1-212ENST00000566082 LRMPQ12912 555 aa12.32□□□□□ -0.44
USB1-212ENST00000566082 ZDHHC9Q9Y397 364 aa12.32□□□□□ -0.44
USB1-212ENST00000566082 RAD50Q92878 1312 aa12.32□□□□□ -0.44
USB1-212ENST00000566082 SMTNL1A8MU46 457 aa12.32□□□□□ -0.44
USB1-212ENST00000566082 CTAGE5O15320 804 aa12.32□□□□□ -0.44
USB1-212ENST00000566082 NMIQ13287 307 aaPredicted RBP12.32□□□□□ -0.44
USB1-212ENST00000566082 VPS53Q5VIR6 699 aa12.32□□□□□ -0.44
USB1-212ENST00000566082 TAF3Q5VWG9 929 aa12.32□□□□□ -0.44
USB1-212ENST00000566082 CREB3L3Q68CJ9 461 aa12.32□□□□□ -0.44
USB1-212ENST00000566082 DBF4Q9UBU7 674 aaPredicted RBP12.32□□□□□ -0.44
USB1-212ENST00000566082 GTF2F1P35269 517 aaKnown RBP eCLIP12.32□□□□□ -0.445e-10■■□□□ 14.3
USB1-212ENST00000566082 PDLIM2Q96JY6 352 aa12.32□□□□□ -0.44
USB1-212ENST00000566082 CROCC2H7BZ55 1655 aa12.32□□□□□ -0.44
USB1-212ENST00000566082 PYCARDQ9ULZ3 195 aa12.31□□□□□ -0.44
USB1-212ENST00000566082 POLR3DP05423 398 aaPredicted RBP12.31□□□□□ -0.44
USB1-212ENST00000566082 RUFY3Q7L099 469 aa12.31□□□□□ -0.44
USB1-212ENST00000566082 RAB11FIP4Q86YS3 637 aa12.31□□□□□ -0.44
USB1-212ENST00000566082 CCDC69A6NI79 296 aa12.31□□□□□ -0.44
USB1-212ENST00000566082 ESCO1Q5FWF5 840 aa12.31□□□□□ -0.44
USB1-212ENST00000566082 LARP1Q6PKG0 1096 aaKnown RBP12.31□□□□□ -0.44
USB1-212ENST00000566082 AOPEPQ8N6M6 819 aa12.31□□□□□ -0.44
USB1-212ENST00000566082 CBX8Q9HC52 389 aa12.31□□□□□ -0.44
USB1-212ENST00000566082 JMYQ8N9B5 988 aa12.3□□□□□ -0.44
USB1-212ENST00000566082 EYA1Q99502 592 aa12.3□□□□□ -0.44
USB1-212ENST00000566082 CCDC171Q6TFL3 1326 aa12.3□□□□□ -0.44
USB1-212ENST00000566082 LIG1P18858 919 aa12.3□□□□□ -0.44
USB1-212ENST00000566082 CUL4AQ13619 759 aa12.3□□□□□ -0.44
USB1-212ENST00000566082 DDX46Q7L014 1031 aaKnown RBP12.3□□□□□ -0.44
USB1-212ENST00000566082 CDC37L1Q7L3B6 337 aa12.3□□□□□ -0.44
USB1-212ENST00000566082 C8orf76Q96K31 380 aa12.3□□□□□ -0.44
USB1-212ENST00000566082 MYD88Q99836 296 aa12.3□□□□□ -0.44
USB1-212ENST00000566082 ASXL2Q76L83 1435 aa12.29□□□□□ -0.44
USB1-212ENST00000566082 PREX2Q70Z35 1606 aa12.29□□□□□ -0.44
USB1-212ENST00000566082 CAVIN2O95810 425 aa12.29□□□□□ -0.44
USB1-212ENST00000566082 NBPF7P0C2Y1 421 aaPredicted RBP12.29□□□□□ -0.44
USB1-212ENST00000566082 GSDMDP57764 484 aa12.29□□□□□ -0.44
USB1-212ENST00000566082 RASEFQ8IZ41 740 aa12.29□□□□□ -0.44
USB1-212ENST00000566082 ZBTB9Q96C00 473 aa12.29□□□□□ -0.44
USB1-212ENST00000566082 CCDC85AQ96PX6 553 aaPredicted RBP12.29□□□□□ -0.44
USB1-212ENST00000566082 CWC15Q9P013 229 aaKnown RBP12.29□□□□□ -0.44
USB1-212ENST00000566082 SLC3A2P08195 630 aaKnown RBP12.29□□□□□ -0.44
USB1-212ENST00000566082 CWF19L2Q2TBE0 894 aaKnown RBP12.29□□□□□ -0.44
USB1-212ENST00000566082 Q6ZUG5 572 aa12.29□□□□□ -0.44
USB1-212ENST00000566082 FEZ1Q99689 392 aa12.29□□□□□ -0.44
USB1-212ENST00000566082 OGFRQ9NZT2 677 aa12.29□□□□□ -0.44
USB1-212ENST00000566082 IQGAP3Q86VI3 1631 aa12.29□□□□□ -0.44
USB1-212ENST00000566082 IPO7O95373 1038 aaKnown RBP12.29□□□□□ -0.44
USB1-212ENST00000566082 DDIT3P35638 169 aa12.29□□□□□ -0.44
USB1-212ENST00000566082 CLEC17AQ6ZS10 378 aa12.29□□□□□ -0.44
USB1-212ENST00000566082 ANKRD20A12PQ8NF67 263 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms