RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 PRKRIP1Q9H875 184 aaPredicted RBP14.27□□□□□ -0.13
VPS39-208ENST00000564994 RRP7AQ9Y3A4 280 aaKnown RBP14.27□□□□□ -0.13
VPS39-208ENST00000564994 FER1L6Q2WGJ9 1857 aa14.27□□□□□ -0.13
VPS39-208ENST00000564994 SLX4Q8IY92 1834 aa14.27□□□□□ -0.13
VPS39-208ENST00000564994 PDE6BP35913 854 aa14.26□□□□□ -0.13
VPS39-208ENST00000564994 RNF181Q9P0P0 153 aa14.26□□□□□ -0.13
VPS39-208ENST00000564994 TSPYL4Q9UJ04 414 aa14.26□□□□□ -0.13
VPS39-208ENST00000564994 ZNF652Q9Y2D9 606 aa14.26□□□□□ -0.13
VPS39-208ENST00000564994 RGL2O15211 777 aa14.25□□□□□ -0.13
VPS39-208ENST00000564994 NGEFQ8N5V2 710 aa14.25□□□□□ -0.13
VPS39-208ENST00000564994 ZNF622Q969S3 477 aaKnown RBP eCLIP14.25□□□□□ -0.137e-7■■■□□ 14.8
VPS39-208ENST00000564994 ADAMTS8Q9UP79 889 aa14.25□□□□□ -0.13
VPS39-208ENST00000564994 PDZRN3Q9UPQ7 1066 aa14.25□□□□□ -0.13
VPS39-208ENST00000564994 NIP7Q9Y221 180 aaKnown RBP eCLIP14.25□□□□□ -0.13
VPS39-208ENST00000564994 NFKBIEO00221 500 aa14.24□□□□□ -0.13
VPS39-208ENST00000564994 MYL6BP14649 208 aa14.24□□□□□ -0.13
VPS39-208ENST00000564994 ST5P78524 1137 aa14.24□□□□□ -0.13
VPS39-208ENST00000564994 WDR43Q15061 677 aaKnown RBP eCLIP14.24□□□□□ -0.13
VPS39-208ENST00000564994 NEUROD2Q15784 382 aa14.24□□□□□ -0.13
VPS39-208ENST00000564994 TTLL7Q6ZT98 887 aa14.24□□□□□ -0.13
VPS39-208ENST00000564994 NBPF5PQ86XG9 351 aaPredicted RBP14.24□□□□□ -0.13
VPS39-208ENST00000564994 RUNDC1Q96C34 613 aa14.24□□□□□ -0.13
VPS39-208ENST00000564994 NMRK2Q9NPI5 230 aa14.24□□□□□ -0.13
VPS39-208ENST00000564994 TRIM35Q9UPQ4 493 aa14.24□□□□□ -0.13
VPS39-208ENST00000564994 TIAM2Q8IVF5 1701 aa14.24□□□□□ -0.13
VPS39-208ENST00000564994 DICER1Q9UPY3 1922 aaKnown RBP14.23□□□□□ -0.13
VPS39-208ENST00000564994 NPHP1O15259 732 aa14.23□□□□□ -0.13
VPS39-208ENST00000564994 SRGNP10124 158 aa14.23□□□□□ -0.13
VPS39-208ENST00000564994 LMOD3Q0VAK6 560 aa14.23□□□□□ -0.13
VPS39-208ENST00000564994 TNRC6CQ9HCJ0 1690 aaKnown RBP14.23□□□□□ -0.13
VPS39-208ENST00000564994 MAP3K15Q6ZN16 1313 aa14.22□□□□□ -0.13
VPS39-208ENST00000564994 FAM177BA6PVY3 158 aa14.22□□□□□ -0.13
VPS39-208ENST00000564994 C21orf2O43822 256 aa14.22□□□□□ -0.13
VPS39-208ENST00000564994 STYK1Q6J9G0 422 aa14.22□□□□□ -0.13
VPS39-208ENST00000564994 LRP10Q7Z4F1 713 aa14.22□□□□□ -0.13
VPS39-208ENST00000564994 BABAM1Q9NWV8 329 aa14.22□□□□□ -0.13
VPS39-208ENST00000564994 ZNF219Q9P2Y4 722 aaPredicted RBP14.22□□□□□ -0.13
VPS39-208ENST00000564994 ERBB4Q15303 1308 aa14.21□□□□□ -0.13
VPS39-208ENST00000564994 ERVV-1B6SEH8 477 aa14.21□□□□□ -0.13
VPS39-208ENST00000564994 LMNB1P20700 586 aa14.21□□□□□ -0.13
VPS39-208ENST00000564994 PDIA6Q15084 440 aa14.21□□□□□ -0.13
VPS39-208ENST00000564994 TPTE2Q6XPS3 522 aa14.21□□□□□ -0.13
VPS39-208ENST00000564994 MASTLQ96GX5 879 aa14.21□□□□□ -0.13
VPS39-208ENST00000564994 KLRG2A4D1S0 409 aaPredicted RBP14.2□□□□□ -0.14
VPS39-208ENST00000564994 CHL1O00533 1208 aa14.2□□□□□ -0.14
VPS39-208ENST00000564994 EIF2S2P20042 333 aaKnown RBP14.2□□□□□ -0.14
VPS39-208ENST00000564994 KRT24Q2M2I5 525 aa14.2□□□□□ -0.14
VPS39-208ENST00000564994 PROSER3Q2NL68 480 aa14.2□□□□□ -0.14
VPS39-208ENST00000564994 PRPF40BQ6NWY9 871 aaKnown RBP14.2□□□□□ -0.14
VPS39-208ENST00000564994 KIF6Q6ZMV9 814 aa14.2□□□□□ -0.14
VPS39-208ENST00000564994 CNKSR1Q969H4 720 aa14.2□□□□□ -0.14
VPS39-208ENST00000564994 ZBTB3Q9H5J0 574 aa14.2□□□□□ -0.14
VPS39-208ENST00000564994 ABCC12Q96J65 1359 aa14.2□□□□□ -0.14
VPS39-208ENST00000564994 UBN2Q6ZU65 1347 aa14.19□□□□□ -0.14
VPS39-208ENST00000564994 ANXA1P04083 346 aa14.19□□□□□ -0.14
VPS39-208ENST00000564994 ANKRD36CQ5JPF3 1778 aa14.19□□□□□ -0.14
VPS39-208ENST00000564994 ZC3H4Q9UPT8 1303 aaKnown RBP14.18□□□□□ -0.14
VPS39-208ENST00000564994 TOMM70O94826 608 aa14.18□□□□□ -0.14
VPS39-208ENST00000564994 NPR1P16066 1061 aa14.18□□□□□ -0.14
VPS39-208ENST00000564994 GPTP24298 496 aa14.18□□□□□ -0.14
VPS39-208ENST00000564994 NUTM1Q86Y26 1132 aa14.18□□□□□ -0.14
VPS39-208ENST00000564994 C7orf43Q8WVR3 580 aa14.18□□□□□ -0.14
VPS39-208ENST00000564994 LAS1LQ9Y4W2 734 aaKnown RBP14.18□□□□□ -0.14
VPS39-208ENST00000564994 KDM2BQ8NHM5 1336 aa14.17□□□□□ -0.14
VPS39-208ENST00000564994 HSPA6P17066 643 aa14.17□□□□□ -0.14
VPS39-208ENST00000564994 ERFEQ4G0M1 354 aa14.17□□□□□ -0.14
VPS39-208ENST00000564994 CCDC184Q52MB2 194 aa14.17□□□□□ -0.14
VPS39-208ENST00000564994 SUSD4Q5VX71 490 aa14.17□□□□□ -0.14
VPS39-208ENST00000564994 GIGYF2Q6Y7W6 1299 aaKnown RBP14.17□□□□□ -0.14
VPS39-208ENST00000564994 ZNF34Q8IZ26 560 aa14.17□□□□□ -0.14
VPS39-208ENST00000564994 NECTIN2Q92692 538 aa14.17□□□□□ -0.14
VPS39-208ENST00000564994 RRAGCQ9HB90 399 aa14.17□□□□□ -0.14
VPS39-208ENST00000564994 LTBP3Q9NS15 1303 aa14.16□□□□□ -0.14
VPS39-208ENST00000564994 GTF2E1P29083 439 aaPredicted RBP14.16□□□□□ -0.14
VPS39-208ENST00000564994 NYXQ9GZU5 481 aa14.16□□□□□ -0.14
VPS39-208ENST00000564994 IBTKQ9P2D0 1353 aaPredicted RBP14.15□□□□□ -0.14
VPS39-208ENST00000564994 GLTPD2A6NH11 291 aa14.15□□□□□ -0.14
VPS39-208ENST00000564994 APAF1O14727 1248 aa14.15□□□□□ -0.14
VPS39-208ENST00000564994 ZEB1P37275 1124 aaPredicted RBP14.15□□□□□ -0.14
VPS39-208ENST00000564994 OLFM4Q6UX06 510 aa14.15□□□□□ -0.14
VPS39-208ENST00000564994 TAOK3Q9H2K8 898 aa14.15□□□□□ -0.14
VPS39-208ENST00000564994 NTSR2O95665 410 aa14.14□□□□□ -0.15
VPS39-208ENST00000564994 CRY2Q49AN0 593 aa14.14□□□□□ -0.15
VPS39-208ENST00000564994 COPS6Q7L5N1 327 aa14.14□□□□□ -0.15
VPS39-208ENST00000564994 XAGE3Q8WTP9 111 aa14.14□□□□□ -0.15
VPS39-208ENST00000564994 CFAP44Q96MT7 982 aa14.14□□□□□ -0.15
VPS39-208ENST00000564994 DDX21Q9NR30 783 aaKnown RBP eCLIP14.14□□□□□ -0.15
VPS39-208ENST00000564994 RIC1Q4ADV7 1423 aa14.14□□□□□ -0.15
VPS39-208ENST00000564994 LAMB2P55268 1798 aa14.14□□□□□ -0.15
VPS39-208ENST00000564994 WDR90Q96KV7 1748 aa14.13□□□□□ -0.15
VPS39-208ENST00000564994 ZNF853P0CG23 659 aa14.13□□□□□ -0.15
VPS39-208ENST00000564994 AIMP1Q12904 312 aaKnown RBP14.13□□□□□ -0.15
VPS39-208ENST00000564994 CCDC93Q567U6 631 aa14.13□□□□□ -0.15
VPS39-208ENST00000564994 SOGA3Q5TF21 947 aa14.13□□□□□ -0.15
VPS39-208ENST00000564994 RBM46Q8TBY0 533 aaKnown RBP14.13□□□□□ -0.15
VPS39-208ENST00000564994 MBIPQ9NS73 344 aa14.13□□□□□ -0.15
VPS39-208ENST00000564994 CHPF2Q9P2E5 772 aa14.13□□□□□ -0.15
VPS39-208ENST00000564994 SNED1Q8TER0 1413 aa14.13□□□□□ -0.15
VPS39-208ENST00000564994 POTECB2RU33 542 aa14.12□□□□□ -0.15
VPS39-208ENST00000564994 C3orf67Q6ZVT6 689 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms