RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 TTLL7Q6ZT98 887 aa26.27■■□□□ 1.8
CLN3-212ENST00000564574 ANKRD13DQ6ZTN6 518 aa26.27■■□□□ 1.8
CLN3-212ENST00000564574 PLBD2Q8NHP8 589 aa26.27■■□□□ 1.8
CLN3-212ENST00000564574 FRAT1Q92837 279 aaPredicted RBP26.27■■□□□ 1.8
CLN3-212ENST00000564574 MAP3K15Q6ZN16 1313 aa26.27■■□□□ 1.8
CLN3-212ENST00000564574 NUP98P52948 1817 aa26.27■■□□□ 1.8
CLN3-212ENST00000564574 ERVV-1B6SEH8 477 aa26.26■■□□□ 1.79
CLN3-212ENST00000564574 PHF14O94880 888 aa26.26■■□□□ 1.79
CLN3-212ENST00000564574 ARHGEF1Q92888 912 aaKnown RBP26.26■■□□□ 1.79
CLN3-212ENST00000564574 RFC4P35249 363 aa26.25■■□□□ 1.79
CLN3-212ENST00000564574 ATF7IPQ6VMQ6 1270 aa26.25■■□□□ 1.79
CLN3-212ENST00000564574 AMIGO3Q86WK7 504 aa26.25■■□□□ 1.79
CLN3-212ENST00000564574 NARFQ9UHQ1 456 aa26.25■■□□□ 1.79
CLN3-212ENST00000564574 ANKRD36CQ5JPF3 1778 aa26.25■■□□□ 1.79
CLN3-212ENST00000564574 N4BP2Q86UW6 1770 aaPredicted RBP26.25■■□□□ 1.79
CLN3-212ENST00000564574 RNF123Q5XPI4 1314 aa26.24■■□□□ 1.79
CLN3-212ENST00000564574 PNPLA7Q6ZV29 1317 aa26.24■■□□□ 1.79
CLN3-212ENST00000564574 MS4A1P11836 297 aa26.24■■□□□ 1.79
CLN3-212ENST00000564574 RRP1P56182 461 aaKnown RBP26.24■■□□□ 1.79
CLN3-212ENST00000564574 RIC3Q7Z5B4 369 aa26.24■■□□□ 1.79
CLN3-212ENST00000564574 ARXQ96QS3 562 aa26.24■■□□□ 1.79
CLN3-212ENST00000564574 TBC1D2BQ9UPU7 963 aa26.24■■□□□ 1.79
CLN3-212ENST00000564574 PXDNLA1KZ92 1463 aa26.23■■□□□ 1.79
CLN3-212ENST00000564574 ADCY9O60503 1353 aa26.23■■□□□ 1.79
CLN3-212ENST00000564574 PI4KAP2A4QPH2 592 aa26.23■■□□□ 1.79
CLN3-212ENST00000564574 ZPR1O75312 459 aa26.23■■□□□ 1.79
CLN3-212ENST00000564574 PI4KAP1Q8N8J0 262 aa26.23■■□□□ 1.79
CLN3-212ENST00000564574 USP42Q9H9J4 1324 aaKnown RBP26.22■■□□□ 1.79
CLN3-212ENST00000564574 CAMTA2O94983 1202 aa26.22■■□□□ 1.79
CLN3-212ENST00000564574 DNAAF4Q8WXU2 420 aa26.22■■□□□ 1.79
CLN3-212ENST00000564574 ZBTB3Q9H5J0 574 aa26.22■■□□□ 1.79
CLN3-212ENST00000564574 TRIM27P14373 513 aa26.21■■□□□ 1.79
CLN3-212ENST00000564574 GIGYF2Q6Y7W6 1299 aaKnown RBP26.21■■□□□ 1.79
CLN3-212ENST00000564574 SMIM5Q71RC9 77 aa26.21■■□□□ 1.79
CLN3-212ENST00000564574 ZNF652Q9Y2D9 606 aa26.21■■□□□ 1.79
CLN3-212ENST00000564574 MAP3K2Q9Y2U5 619 aa26.21■■□□□ 1.79
CLN3-212ENST00000564574 SUPT16HQ9Y5B9 1047 aaKnown RBP26.21■■□□□ 1.79
CLN3-212ENST00000564574 PSDA5PKW4 1024 aaPredicted RBP26.2■■□□□ 1.78
CLN3-212ENST00000564574 HSP90AB3PQ58FF7 597 aa26.2■■□□□ 1.78
CLN3-212ENST00000564574 CLEC4GQ6UXB4 293 aa26.2■■□□□ 1.78
CLN3-212ENST00000564574 COL23A1Q86Y22 540 aaPredicted RBP26.2■■□□□ 1.78
CLN3-212ENST00000564574 METTL22Q9BUU2 404 aaPredicted RBP26.19■■□□□ 1.78
CLN3-212ENST00000564574 ABCC4O15439 1325 aa26.18■■□□□ 1.78
CLN3-212ENST00000564574 USPL1Q5W0Q7 1092 aa26.18■■□□□ 1.78
CLN3-212ENST00000564574 ATP10DQ9P241 1426 aa26.18■■□□□ 1.78
CLN3-212ENST00000564574 AFDNP55196 1824 aaKnown RBP26.18■■□□□ 1.78
CLN3-212ENST00000564574 F6X3S4 739 aa26.17■■□□□ 1.78
CLN3-212ENST00000564574 PLIN1O60240 522 aa26.17■■□□□ 1.78
CLN3-212ENST00000564574 NEXNQ0ZGT2 675 aa26.17■■□□□ 1.78
CLN3-212ENST00000564574 PDE3AQ14432 1141 aa26.17■■□□□ 1.78
CLN3-212ENST00000564574 FTSJ3Q8IY81 847 aaKnown RBP26.17■■□□□ 1.78
CLN3-212ENST00000564574 DZIP1LQ8IYY4 767 aaKnown RBP26.17■■□□□ 1.78
CLN3-212ENST00000564574 SRP68Q9UHB9 627 aaKnown RBP26.17■■□□□ 1.78
CLN3-212ENST00000564574 MSH5O43196 834 aa26.16■■□□□ 1.78
CLN3-212ENST00000564574 TCIRG1Q13488 830 aa26.16■■□□□ 1.78
CLN3-212ENST00000564574 HLFQ16534 295 aa26.16■■□□□ 1.78
CLN3-212ENST00000564574 CASZ1Q86V15 1759 aa26.15■■□□□ 1.78
CLN3-212ENST00000564574 BCL2L12Q9HB09 334 aa26.15■■□□□ 1.78
CLN3-212ENST00000564574 CCT4P50991 539 aaKnown RBP26.14■■□□□ 1.78
CLN3-212ENST00000564574 SLC4A10Q6U841 1118 aa26.14■■□□□ 1.78
CLN3-212ENST00000564574 MYD88Q99836 296 aa26.14■■□□□ 1.78
CLN3-212ENST00000564574 IBTKQ9P2D0 1353 aaPredicted RBP26.13■■□□□ 1.77
CLN3-212ENST00000564574 GYS1P13807 737 aa26.13■■□□□ 1.77
CLN3-212ENST00000564574 BEND3Q5T5X7 828 aa26.13■■□□□ 1.77
CLN3-212ENST00000564574 LINS1Q8NG48 757 aa26.13■■□□□ 1.77
CLN3-212ENST00000564574 SLC16A10Q8TF71 515 aa26.13■■□□□ 1.77
CLN3-212ENST00000564574 CLUAP1Q96AJ1 413 aa26.13■■□□□ 1.77
CLN3-212ENST00000564574 TNNQ9UQP3 1299 aa26.13■■□□□ 1.77
CLN3-212ENST00000564574 INTS3Q68E01 1043 aaKnown RBP26.12■■□□□ 1.77
CLN3-212ENST00000564574 ISCA1Q9BUE6 129 aa26.12■■□□□ 1.77
CLN3-212ENST00000564574 SRCIN1Q9C0H9 1055 aa26.12■■□□□ 1.77
CLN3-212ENST00000564574 COL24A1Q17RW2 1714 aa26.11■■□□□ 1.77
CLN3-212ENST00000564574 ALDH1L1O75891 902 aa26.11■■□□□ 1.77
CLN3-212ENST00000564574 TRIM28Q13263 835 aaKnown RBP26.11■■□□□ 1.77
CLN3-212ENST00000564574 R3HDM1Q15032 1099 aaKnown RBP26.11■■□□□ 1.77
CLN3-212ENST00000564574 ZNF34Q8IZ26 560 aa26.11■■□□□ 1.77
CLN3-212ENST00000564574 NLGN1Q8N2Q7 840 aa26.11■■□□□ 1.77
CLN3-212ENST00000564574 PARP10Q53GL7 1025 aa26.09■■□□□ 1.77
CLN3-212ENST00000564574 TMEM57Q8N5G2 664 aa26.09■■□□□ 1.77
CLN3-212ENST00000564574 CCDC191Q8NCU4 936 aa26.09■■□□□ 1.77
CLN3-212ENST00000564574 LRP5O75197 1615 aa26.08■■□□□ 1.77
CLN3-212ENST00000564574 IGKV5-2P06315 115 aa26.08■■□□□ 1.77
CLN3-212ENST00000564574 RLBP1P12271 317 aa26.08■■□□□ 1.77
CLN3-212ENST00000564574 FKBP8Q14318 412 aa26.08■■□□□ 1.77
CLN3-212ENST00000564574 PANK1Q8TE04 598 aa26.08■■□□□ 1.77
CLN3-212ENST00000564574 NIP7Q9Y221 180 aaKnown RBP eCLIP26.08■■□□□ 1.77
CLN3-212ENST00000564574 NEURL1BA8MQ27 555 aa26.07■■□□□ 1.76
CLN3-212ENST00000564574 ATP5J2-PTCD1G3V325 749 aa26.07■■□□□ 1.76
CLN3-212ENST00000564574 TBC1D9BQ66K14 1250 aa26.07■■□□□ 1.76
CLN3-212ENST00000564574 CWF19L2Q2TBE0 894 aaKnown RBP26.06■■□□□ 1.76
CLN3-212ENST00000564574 C20orf194Q5TEA3 1177 aa26.06■■□□□ 1.76
CLN3-212ENST00000564574 SETDB2Q96T68 719 aa26.06■■□□□ 1.76
CLN3-212ENST00000564574 CWC25Q9NXE8 425 aaPredicted RBP26.06■■□□□ 1.76
CLN3-212ENST00000564574 GPTP24298 496 aa26.05■■□□□ 1.76
CLN3-212ENST00000564574 MVPQ14764 893 aaKnown RBP26.05■■□□□ 1.76
CLN3-212ENST00000564574 NLRP10Q86W26 655 aa26.05■■□□□ 1.76
CLN3-212ENST00000564574 UBN2Q6ZU65 1347 aa26.05■■□□□ 1.76
CLN3-212ENST00000564574 CARMIL3Q8ND23 1372 aa26.05■■□□□ 1.76
CLN3-212ENST00000564574 TM4SF1P30408 202 aa26.04■■□□□ 1.76
CLN3-212ENST00000564574 GCKRQ14397 625 aa26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms