RNA–Protein interactions for RNA: ENST00000564106.1

UBFD1-203, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 2

Gene UBFD1, Length 587 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-203ENST00000564106 ZNF428Q96B54 188 aa12.53□□□□□ -0.4
UBFD1-203ENST00000564106 SPINK5Q9NQ38 1064 aaPredicted RBP12.53□□□□□ -0.4
UBFD1-203ENST00000564106 IFT57Q9NWB7 429 aa12.53□□□□□ -0.4
UBFD1-203ENST00000564106 FANCIQ9NVI1 1328 aa12.53□□□□□ -0.4
UBFD1-203ENST00000564106 TEFQ10587 303 aa12.52□□□□□ -0.41
UBFD1-203ENST00000564106 RTF1Q92541 710 aaKnown RBP12.52□□□□□ -0.41
UBFD1-203ENST00000564106 THUMPD2Q9BTF0 503 aaKnown RBP12.52□□□□□ -0.41
UBFD1-203ENST00000564106 PPP4R2Q9NY27 417 aa12.52□□□□□ -0.41
UBFD1-203ENST00000564106 USP16Q9Y5T5 823 aa12.52□□□□□ -0.41
UBFD1-203ENST00000564106 KIF3CO14782 793 aa12.51□□□□□ -0.41
UBFD1-203ENST00000564106 TBC1D9BQ66K14 1250 aa12.51□□□□□ -0.41
UBFD1-203ENST00000564106 BICDL1Q6ZP65 573 aa12.51□□□□□ -0.41
UBFD1-203ENST00000564106 MIS18AQ9NYP9 233 aa12.51□□□□□ -0.41
UBFD1-203ENST00000564106 TBC1D2BQ9UPU7 963 aa12.51□□□□□ -0.41
UBFD1-203ENST00000564106 LAMB4A4D0S4 1761 aa12.51□□□□□ -0.41
UBFD1-203ENST00000564106 CACNA1SQ13698 1873 aa12.51□□□□□ -0.41
UBFD1-203ENST00000564106 BTBD11A6QL63 1104 aa12.5□□□□□ -0.41
UBFD1-203ENST00000564106 ZPR1O75312 459 aa12.5□□□□□ -0.41
UBFD1-203ENST00000564106 TTC5Q8N0Z6 440 aa12.5□□□□□ -0.41
UBFD1-203ENST00000564106 CFAP44Q96MT7 982 aa12.5□□□□□ -0.41
UBFD1-203ENST00000564106 NBPF26B4DH59 902 aa12.49□□□□□ -0.41
UBFD1-203ENST00000564106 CAMTA2O94983 1202 aa12.49□□□□□ -0.41
UBFD1-203ENST00000564106 SERPINB2P05120 415 aa12.49□□□□□ -0.41
UBFD1-203ENST00000564106 IRX6P78412 446 aaPredicted RBP12.49□□□□□ -0.41
UBFD1-203ENST00000564106 RASSF7Q02833 373 aa12.49□□□□□ -0.41
UBFD1-203ENST00000564106 NBPF10Q6P3W6 841 aaKnown RBP12.49□□□□□ -0.41
UBFD1-203ENST00000564106 ARHGAP27Q6ZUM4 889 aa12.49□□□□□ -0.41
UBFD1-203ENST00000564106 NBPF15Q8N660 670 aa12.49□□□□□ -0.41
UBFD1-203ENST00000564106 ZNF330Q9Y3S2 320 aaPredicted RBP12.49□□□□□ -0.41
UBFD1-203ENST00000564106 CCDC88AQ3V6T2 1871 aa12.48□□□□□ -0.41
UBFD1-203ENST00000564106 MS4A1P11836 297 aa12.48□□□□□ -0.41
UBFD1-203ENST00000564106 FMNL2Q96PY5 1086 aa12.48□□□□□ -0.41
UBFD1-203ENST00000564106 GPBP1L1Q9HC44 474 aaPredicted RBP12.48□□□□□ -0.41
UBFD1-203ENST00000564106 TNRC6CQ9HCJ0 1690 aaKnown RBP12.48□□□□□ -0.41
UBFD1-203ENST00000564106 ZNF853P0CG23 659 aa12.47□□□□□ -0.41
UBFD1-203ENST00000564106 C9orf131Q5VYM1 1079 aa12.47□□□□□ -0.41
UBFD1-203ENST00000564106 TSR2Q969E8 191 aaKnown RBP12.47□□□□□ -0.41
UBFD1-203ENST00000564106 NMRK2Q9NPI5 230 aa12.47□□□□□ -0.41
UBFD1-203ENST00000564106 PIM2Q9P1W9 311 aa12.47□□□□□ -0.41
UBFD1-203ENST00000564106 TIAM2Q8IVF5 1701 aa12.47□□□□□ -0.41
UBFD1-203ENST00000564106 SLX4Q8IY92 1834 aa12.46□□□□□ -0.41
UBFD1-203ENST00000564106 KIF16BQ96L93 1317 aa12.46□□□□□ -0.41
UBFD1-203ENST00000564106 STARD3NLO95772 234 aa12.46□□□□□ -0.41
UBFD1-203ENST00000564106 IL6STP40189 918 aaPredicted RBP12.46□□□□□ -0.41
UBFD1-203ENST00000564106 RARSP54136 660 aaKnown RBP12.46□□□□□ -0.41
UBFD1-203ENST00000564106 EXOSC9Q06265 439 aaKnown RBP12.46□□□□□ -0.41
UBFD1-203ENST00000564106 PDE3AQ14432 1141 aa12.46□□□□□ -0.41
UBFD1-203ENST00000564106 ALDH1L2Q3SY69 923 aa12.46□□□□□ -0.41
UBFD1-203ENST00000564106 DALRD3Q5D0E6 543 aaKnown RBP12.46□□□□□ -0.41
UBFD1-203ENST00000564106 PRR5LQ6MZQ0 368 aa12.46□□□□□ -0.41
UBFD1-203ENST00000564106 SLC51AQ86UW1 340 aa12.46□□□□□ -0.41
UBFD1-203ENST00000564106 BABAM1Q9NWV8 329 aa12.46□□□□□ -0.41
UBFD1-203ENST00000564106 AAMPQ13685 434 aa12.45□□□□□ -0.42
UBFD1-203ENST00000564106 LAS1LQ9Y4W2 734 aaKnown RBP12.45□□□□□ -0.42
UBFD1-203ENST00000564106 ARFGEF2Q9Y6D5 1785 aa12.45□□□□□ -0.42
UBFD1-203ENST00000564106 FER1L6Q2WGJ9 1857 aa12.44□□□□□ -0.42
UBFD1-203ENST00000564106 CACNA1FO60840 1977 aa12.44□□□□□ -0.42
UBFD1-203ENST00000564106 NFKBIEO00221 500 aa12.44□□□□□ -0.42
UBFD1-203ENST00000564106 C2CD5Q86YS7 1000 aa12.44□□□□□ -0.42
UBFD1-203ENST00000564106 MBIPQ9NS73 344 aa12.44□□□□□ -0.42
UBFD1-203ENST00000564106 CHL1O00533 1208 aa12.43□□□□□ -0.42
UBFD1-203ENST00000564106 HLFQ16534 295 aa12.43□□□□□ -0.42
UBFD1-203ENST00000564106 DZIP3Q86Y13 1208 aaKnown RBP12.43□□□□□ -0.42
UBFD1-203ENST00000564106 CHMP4AQ9BY43 222 aa12.43□□□□□ -0.42
UBFD1-203ENST00000564106 SMC4Q9NTJ3 1288 aa12.43□□□□□ -0.42
UBFD1-203ENST00000564106 NUP98P52948 1817 aa12.43□□□□□ -0.42
UBFD1-203ENST00000564106 IPO8O15397 1037 aaKnown RBP12.42□□□□□ -0.42
UBFD1-203ENST00000564106 BCAR3O75815 825 aa12.42□□□□□ -0.42
UBFD1-203ENST00000564106 SNRPA1P09661 255 aaKnown RBP12.42□□□□□ -0.42
UBFD1-203ENST00000564106 CCDC136Q96JN2 1154 aa12.42□□□□□ -0.42
UBFD1-203ENST00000564106 RNF181Q9P0P0 153 aa12.42□□□□□ -0.42
UBFD1-203ENST00000564106 ZNF219Q9P2Y4 722 aaPredicted RBP12.42□□□□□ -0.42
UBFD1-203ENST00000564106 A0A087WZG4 1122 aa12.41□□□□□ -0.42
UBFD1-203ENST00000564106 PLIN1O60240 522 aa12.41□□□□□ -0.42
UBFD1-203ENST00000564106 BRPF1P55201 1214 aaPredicted RBP12.41□□□□□ -0.42
UBFD1-203ENST00000564106 EIF4A1P60842 406 aaKnown RBP12.41□□□□□ -0.42
UBFD1-203ENST00000564106 TAF7Q15545 349 aaPredicted RBP12.41□□□□□ -0.42
UBFD1-203ENST00000564106 TWISTNBQ3B726 338 aaPredicted RBP12.41□□□□□ -0.42
UBFD1-203ENST00000564106 ZKSCAN2Q63HK3 967 aa12.41□□□□□ -0.42
UBFD1-203ENST00000564106 OLFM4Q6UX06 510 aa12.41□□□□□ -0.42
UBFD1-203ENST00000564106 TEX13AQ9BXU3 409 aaPredicted RBP12.41□□□□□ -0.42
UBFD1-203ENST00000564106 TTLL7Q6ZT98 887 aa12.4□□□□□ -0.42
UBFD1-203ENST00000564106 FRAT1Q92837 279 aaPredicted RBP12.4□□□□□ -0.42
UBFD1-203ENST00000564106 TSPYL4Q9UJ04 414 aa12.4□□□□□ -0.42
UBFD1-203ENST00000564106 DICER1Q9UPY3 1922 aaKnown RBP12.4□□□□□ -0.42
UBFD1-203ENST00000564106 ABCC12Q96J65 1359 aa12.4□□□□□ -0.42
UBFD1-203ENST00000564106 FAM177BA6PVY3 158 aa12.39□□□□□ -0.43
UBFD1-203ENST00000564106 HTRA3P83110 453 aa12.39□□□□□ -0.43
UBFD1-203ENST00000564106 KRT24Q2M2I5 525 aa12.39□□□□□ -0.43
UBFD1-203ENST00000564106 PROSER3Q2NL68 480 aa12.39□□□□□ -0.43
UBFD1-203ENST00000564106 LRP10Q7Z4F1 713 aa12.39□□□□□ -0.43
UBFD1-203ENST00000564106 FTSJ3Q8IY81 847 aaKnown RBP12.39□□□□□ -0.43
UBFD1-203ENST00000564106 TTLL6Q8N841 843 aa12.39□□□□□ -0.43
UBFD1-203ENST00000564106 BRIP1Q9BX63 1249 aa12.39□□□□□ -0.43
UBFD1-203ENST00000564106 C21orf2O43822 256 aa12.38□□□□□ -0.43
UBFD1-203ENST00000564106 VAMP4O75379 141 aa12.38□□□□□ -0.43
UBFD1-203ENST00000564106 ANXA1P04083 346 aa12.38□□□□□ -0.43
UBFD1-203ENST00000564106 HSPA6P17066 643 aa12.38□□□□□ -0.43
UBFD1-203ENST00000564106 CNBD1Q8NA66 436 aa12.38□□□□□ -0.43
UBFD1-203ENST00000564106 EXOC6Q8TAG9 804 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms