RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 A0A0U1RQG5 324 aaPredicted RBP12.4□□□□□ -0.42
RNF40-204ENST00000563683 ZNF853P0CG23 659 aa12.4□□□□□ -0.42
RNF40-204ENST00000563683 TRDNQ13061 729 aa12.4□□□□□ -0.42
RNF40-204ENST00000563683 A0A087WZG4 1122 aa12.39□□□□□ -0.43
RNF40-204ENST00000563683 GCP02774 474 aa12.39□□□□□ -0.43
RNF40-204ENST00000563683 UBE3BQ7Z3V4 1068 aa12.39□□□□□ -0.43
RNF40-204ENST00000563683 RALYLQ86SE5 291 aaKnown RBP12.39□□□□□ -0.43
RNF40-204ENST00000563683 IL17REQ8NFR9 667 aa12.39□□□□□ -0.43
RNF40-204ENST00000563683 BRD1O95696 1058 aa12.39□□□□□ -0.43
RNF40-204ENST00000563683 TPM3P06753 285 aa12.39□□□□□ -0.43
RNF40-204ENST00000563683 NBPF7P0C2Y1 421 aaPredicted RBP12.39□□□□□ -0.43
RNF40-204ENST00000563683 IFT172Q9UG01 1749 aa12.39□□□□□ -0.43
RNF40-204ENST00000563683 MAP3K5Q99683 1374 aa12.39□□□□□ -0.43
RNF40-204ENST00000563683 KRT85P78386 507 aa12.39□□□□□ -0.43
RNF40-204ENST00000563683 CBX1P83916 185 aa12.39□□□□□ -0.43
RNF40-204ENST00000563683 PPP4R3BQ5MIZ7 849 aa12.39□□□□□ -0.43
RNF40-204ENST00000563683 CABLES1Q8TDN4 633 aa12.39□□□□□ -0.43
RNF40-204ENST00000563683 ZC3H13Q5T200 1668 aaKnown RBP12.39□□□□□ -0.43
RNF40-204ENST00000563683 COPS6Q7L5N1 327 aa12.38□□□□□ -0.43
RNF40-204ENST00000563683 ORAI2Q96SN7 254 aa12.38□□□□□ -0.43
RNF40-204ENST00000563683 NSFL1CQ9UNZ2 370 aaKnown RBP12.38□□□□□ -0.43
RNF40-204ENST00000563683 SBNO1A3KN83 1393 aa12.38□□□□□ -0.43
RNF40-204ENST00000563683 ROBO2Q9HCK4 1378 aa12.38□□□□□ -0.43
RNF40-204ENST00000563683 PPFIA3O75145 1194 aa12.38□□□□□ -0.43
RNF40-204ENST00000563683 CPA1P15085 419 aa12.38□□□□□ -0.43
RNF40-204ENST00000563683 NBPF6Q5VWK0 638 aa12.38□□□□□ -0.43
RNF40-204ENST00000563683 INTS4Q96HW7 963 aaKnown RBP12.38□□□□□ -0.43
RNF40-204ENST00000563683 NBPF4Q96M43 638 aa12.38□□□□□ -0.43
RNF40-204ENST00000563683 PPRC1Q5VV67 1664 aaKnown RBP12.38□□□□□ -0.43
RNF40-204ENST00000563683 RTL1A6NKG5 1358 aa12.38□□□□□ -0.43
RNF40-204ENST00000563683 COL3A1P02461 1466 aaPredicted RBP12.38□□□□□ -0.43
RNF40-204ENST00000563683 AKAP4Q5JQC9 854 aa12.38□□□□□ -0.43
RNF40-204ENST00000563683 TAF3Q5VWG9 929 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 PDCL2Q8N4E4 241 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 NECAB1Q8N987 351 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 ZNF592Q92610 1267 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 CCDC73Q6ZRK6 1079 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 XAGE3Q8WTP9 111 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 IP6K1Q92551 441 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 ZSCAN31Q96LW9 406 aaPredicted RBP12.37□□□□□ -0.43
RNF40-204ENST00000563683 SOS1Q07889 1333 aaPredicted RBP12.37□□□□□ -0.43
RNF40-204ENST00000563683 GLI2P10070 1586 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 KCNQ3O43525 872 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 ANKRD1Q15327 319 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 CAMK4Q16566 473 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 CPLX2Q6PUV4 134 aaKnown RBP12.37□□□□□ -0.43
RNF40-204ENST00000563683 NFATC2IPQ8NCF5 419 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 SDF4Q9BRK5 362 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 KSR2Q6VAB6 950 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 NFXL1Q6ZNB6 911 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 KLHL34Q8N239 644 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 ZBTB3Q9H5J0 574 aa12.37□□□□□ -0.43
RNF40-204ENST00000563683 ADGRB3O60242 1522 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 STX6O43752 255 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 CCDC57Q2TAC2 916 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 EVI5LQ96CN4 794 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 TRIM5Q9C035 493 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 CEP126Q9P2H0 1117 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 TFIP11Q9UBB9 837 aaKnown RBP12.36□□□□□ -0.43
RNF40-204ENST00000563683 GRM8O00222 908 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 ANKRD13DQ6ZTN6 518 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 CHAMP1Q96JM3 812 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 USP44Q9H0E7 712 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 SPTLC3Q9NUV7 552 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 ADCY5O95622 1261 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 GJB2P29033 226 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 CCDC183Q5T5S1 534 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 CREBRFQ8IUR6 639 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 ZNF710Q8N1W2 664 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 SIRT1Q96EB6 747 aa12.36□□□□□ -0.43
RNF40-204ENST00000563683 AATKQ6ZMQ8 1374 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 ADGRB1O14514 1584 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 TPM4P67936 248 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 USP25Q9UHP3 1055 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 FAM135BQ49AJ0 1406 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 CUL4AQ13619 759 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 CCDC158Q5M9N0 1113 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 SYNE3Q6ZMZ3 975 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 SPATA32Q96LK8 384 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 ABCA9Q8IUA7 1624 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 TTC39AQ5SRH9 613 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 STK11IPQ8N1F8 1099 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 FMNL2Q96PY5 1086 aa12.35□□□□□ -0.43
RNF40-204ENST00000563683 TULP4Q9NRJ4 1543 aa12.34□□□□□ -0.43
RNF40-204ENST00000563683 IFNL2Q8IZJ0 200 aa12.34□□□□□ -0.43
RNF40-204ENST00000563683 KLHDC4Q8TBB5 520 aa12.34□□□□□ -0.43
RNF40-204ENST00000563683 TNMDQ9H2S6 317 aa12.34□□□□□ -0.43
RNF40-204ENST00000563683 CNNM1Q9NRU3 951 aa12.34□□□□□ -0.43
RNF40-204ENST00000563683 PNPLA6Q8IY17 1366 aa12.34□□□□□ -0.43
RNF40-204ENST00000563683 KIAA0232Q92628 1395 aa12.34□□□□□ -0.43
RNF40-204ENST00000563683 CCDC192P0DO97 292 aa12.34□□□□□ -0.43
RNF40-204ENST00000563683 ANAPC15P60006 121 aa12.34□□□□□ -0.43
RNF40-204ENST00000563683 TSPOAP1O95153 1857 aa12.34□□□□□ -0.43
RNF40-204ENST00000563683 CHMP4CQ96CF2 233 aa12.34□□□□□ -0.43
RNF40-204ENST00000563683 ZNF830Q96NB3 372 aaPredicted RBP12.34□□□□□ -0.43
RNF40-204ENST00000563683 DDX46Q7L014 1031 aaKnown RBP12.33□□□□□ -0.43
RNF40-204ENST00000563683 FEZ1Q99689 392 aa12.33□□□□□ -0.43
RNF40-204ENST00000563683 TTC12Q9H892 705 aaPredicted RBP12.33□□□□□ -0.43
RNF40-204ENST00000563683 BCL2L12Q9HB09 334 aa12.33□□□□□ -0.43
RNF40-204ENST00000563683 ATP7BP35670 1465 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms