RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 RC3H1Q5TC82 1133 aaKnown RBP17.54■□□□□ 0.4
CLK3-209ENST00000562670 RIC3Q7Z5B4 369 aa17.54■□□□□ 0.4
CLK3-209ENST00000562670 PCDHB15Q9Y5E8 787 aa17.54■□□□□ 0.4
CLK3-209ENST00000562670 TNS1Q9HBL0 1735 aaKnown RBP17.54■□□□□ 0.4
CLK3-209ENST00000562670 RGL2O15211 777 aa17.53■□□□□ 0.4
CLK3-209ENST00000562670 CRKLP46109 303 aaKnown RBP17.53■□□□□ 0.4
CLK3-209ENST00000562670 NEXNQ0ZGT2 675 aa17.53■□□□□ 0.4
CLK3-209ENST00000562670 AIMP1Q12904 312 aaKnown RBP17.53■□□□□ 0.4
CLK3-209ENST00000562670 INTS5Q6P9B9 1019 aaKnown RBP17.53■□□□□ 0.4
CLK3-209ENST00000562670 MEIS3Q99687 375 aa17.53■□□□□ 0.4
CLK3-209ENST00000562670 MYH14Q7Z406 1995 aaKnown RBP17.53■□□□□ 0.4
CLK3-209ENST00000562670 UTYO14607 1347 aa17.52■□□□□ 0.4
CLK3-209ENST00000562670 PIP4K2AP48426 406 aaPredicted RBP17.52■□□□□ 0.4
CLK3-209ENST00000562670 EIF5P55010 431 aaKnown RBP17.52■□□□□ 0.4
CLK3-209ENST00000562670 SLC27A3Q5K4L6 730 aa17.52■□□□□ 0.4
CLK3-209ENST00000562670 BCORQ6W2J9 1755 aa17.52■□□□□ 0.4
CLK3-209ENST00000562670 C4BP0C0L5 1744 aa17.52■□□□□ 0.39
CLK3-209ENST00000562670 COL15A1P39059 1388 aa17.52■□□□□ 0.39
CLK3-209ENST00000562670 MAP3K15Q6ZN16 1313 aa17.51■□□□□ 0.39
CLK3-209ENST00000562670 ANKRD36CQ5JPF3 1778 aa17.51■□□□□ 0.39
CLK3-209ENST00000562670 KIF6Q6ZMV9 814 aa17.51■□□□□ 0.39
CLK3-209ENST00000562670 TTLL7Q6ZT98 887 aa17.51■□□□□ 0.39
CLK3-209ENST00000562670 USP44Q9H0E7 712 aa17.51■□□□□ 0.39
CLK3-209ENST00000562670 CCNL1Q9UK58 526 aaPredicted RBP17.51■□□□□ 0.39
CLK3-209ENST00000562670 HDAC5Q9UQL6 1122 aa17.51■□□□□ 0.39
CLK3-209ENST00000562670 SCN7AQ01118 1682 aa17.51■□□□□ 0.39
CLK3-209ENST00000562670 EP400Q96L91 3159 aa17.5■□□□□ 0.39
CLK3-209ENST00000562670 ERVV-1B6SEH8 477 aa17.5■□□□□ 0.39
CLK3-209ENST00000562670 IGKV5-2P06315 115 aa17.5■□□□□ 0.39
CLK3-209ENST00000562670 LINC00116Q8NCU8 138 aa17.5■□□□□ 0.39
CLK3-209ENST00000562670 RWDD1Q9H446 243 aaPredicted RBP17.5■□□□□ 0.39
CLK3-209ENST00000562670 AFDNP55196 1824 aaKnown RBP17.49■□□□□ 0.39
CLK3-209ENST00000562670 NEURL1BA8MQ27 555 aa17.49■□□□□ 0.39
CLK3-209ENST00000562670 GNAI2P04899 355 aa17.49■□□□□ 0.39
CLK3-209ENST00000562670 TRIM28Q13263 835 aaKnown RBP17.49■□□□□ 0.39
CLK3-209ENST00000562670 RPAP2Q8IXW5 612 aaPredicted RBP17.49■□□□□ 0.39
CLK3-209ENST00000562670 PLSCR1O15162 318 aa17.48■□□□□ 0.39
CLK3-209ENST00000562670 TRIM37O94972 964 aa17.48■□□□□ 0.39
CLK3-209ENST00000562670 UBTFL1P0CB47 393 aaPredicted RBP17.48■□□□□ 0.39
CLK3-209ENST00000562670 HSP90AB3PQ58FF7 597 aa17.48■□□□□ 0.39
CLK3-209ENST00000562670 ANKRD44Q8N8A2 993 aa17.48■□□□□ 0.39
CLK3-209ENST00000562670 A0A087WZG4 1122 aa17.47■□□□□ 0.39
CLK3-209ENST00000562670 GRM8O00222 908 aa17.47■□□□□ 0.39
CLK3-209ENST00000562670 GCKRQ14397 625 aa17.47■□□□□ 0.39
CLK3-209ENST00000562670 CEP85Q6P2H3 762 aa17.47■□□□□ 0.39
CLK3-209ENST00000562670 GIGYF2Q6Y7W6 1299 aaKnown RBP17.47■□□□□ 0.39
CLK3-209ENST00000562670 NPM2Q86SE8 214 aaKnown RBP17.47■□□□□ 0.39
CLK3-209ENST00000562670 MYD88Q99836 296 aa17.47■□□□□ 0.39
CLK3-209ENST00000562670 IGHDP01880 384 aa17.46■□□□□ 0.39
CLK3-209ENST00000562670 CWF19L2Q2TBE0 894 aaKnown RBP17.46■□□□□ 0.39
CLK3-209ENST00000562670 DZIP3Q86Y13 1208 aaKnown RBP17.46■□□□□ 0.39
CLK3-209ENST00000562670 CCDC191Q8NCU4 936 aa17.46■□□□□ 0.39
CLK3-209ENST00000562670 ISCA1Q9BUE6 129 aa17.46■□□□□ 0.39
CLK3-209ENST00000562670 RPS6KA4O75676 772 aa17.45■□□□□ 0.38
CLK3-209ENST00000562670 TCIRG1Q13488 830 aa17.45■□□□□ 0.38
CLK3-209ENST00000562670 SMC5Q8IY18 1101 aa17.45■□□□□ 0.38
CLK3-209ENST00000562670 ZBTB3Q9H5J0 574 aa17.45■□□□□ 0.38
CLK3-209ENST00000562670 C1orf115Q9H7X2 142 aa17.45■□□□□ 0.38
CLK3-209ENST00000562670 NUP98P52948 1817 aa17.44■□□□□ 0.38
CLK3-209ENST00000562670 HMMRO75330 724 aa17.44■□□□□ 0.38
CLK3-209ENST00000562670 MTX1Q13505 466 aa17.44■□□□□ 0.38
CLK3-209ENST00000562670 SIRT2Q8IXJ6 389 aa17.44■□□□□ 0.38
CLK3-209ENST00000562670 CWC25Q9NXE8 425 aaPredicted RBP17.44■□□□□ 0.38
CLK3-209ENST00000562670 C9orf78Q9NZ63 289 aaPredicted RBP17.44■□□□□ 0.38
CLK3-209ENST00000562670 CAMTA2O94983 1202 aa17.43■□□□□ 0.38
CLK3-209ENST00000562670 NBPF7P0C2Y1 421 aaPredicted RBP17.43■□□□□ 0.38
CLK3-209ENST00000562670 ADRA2BP18089 450 aa17.43■□□□□ 0.38
CLK3-209ENST00000562670 ILDR1Q86SU0 546 aaPredicted RBP17.43■□□□□ 0.38
CLK3-209ENST00000562670 GCC1Q96CN9 775 aa17.43■□□□□ 0.38
CLK3-209ENST00000562670 ZNF330Q9Y3S2 320 aaPredicted RBP17.43■□□□□ 0.38
CLK3-209ENST00000562670 LRRFIP2Q9Y608 721 aaKnown RBP17.43■□□□□ 0.38
CLK3-209ENST00000562670 C4AP0C0L4 1744 aa17.43■□□□□ 0.38
CLK3-209ENST00000562670 UBR3Q6ZT12 1888 aa17.43■□□□□ 0.38
CLK3-209ENST00000562670 CLEC4GQ6UXB4 293 aa17.42■□□□□ 0.38
CLK3-209ENST00000562670 PELP1Q8IZL8 1130 aaKnown RBP17.42■□□□□ 0.38
CLK3-209ENST00000562670 LRRC4BQ9NT99 713 aa17.42■□□□□ 0.38
CLK3-209ENST00000562670 CASP7P55210 303 aa17.41■□□□□ 0.38
CLK3-209ENST00000562670 ZNF652Q9Y2D9 606 aa17.41■□□□□ 0.38
CLK3-209ENST00000562670 RTCBQ9Y3I0 505 aaKnown RBP17.41■□□□□ 0.38
CLK3-209ENST00000562670 H7C1W4 665 aa17.4■□□□□ 0.38
CLK3-209ENST00000562670 ATP8B2P98198 1209 aa17.4■□□□□ 0.38
CLK3-209ENST00000562670 TXNRD1Q16881 649 aa17.4■□□□□ 0.38
CLK3-209ENST00000562670 COL24A1Q17RW2 1714 aa17.4■□□□□ 0.38
CLK3-209ENST00000562670 ATP5J2-PTCD1G3V325 749 aa17.39■□□□□ 0.37
CLK3-209ENST00000562670 GNPATO15228 680 aa17.39■□□□□ 0.37
CLK3-209ENST00000562670 HLFQ16534 295 aa17.39■□□□□ 0.37
CLK3-209ENST00000562670 ZNF34Q8IZ26 560 aa17.39■□□□□ 0.37
CLK3-209ENST00000562670 SSH3Q8TE77 659 aa17.39■□□□□ 0.37
CLK3-209ENST00000562670 AK7Q96M32 723 aa17.39■□□□□ 0.37
CLK3-209ENST00000562670 DCTPP1Q9H773 170 aa17.39■□□□□ 0.37
CLK3-209ENST00000562670 APBA3O96018 575 aa17.38■□□□□ 0.37
CLK3-209ENST00000562670 PCCAP05165 728 aaPredicted RBP17.38■□□□□ 0.37
CLK3-209ENST00000562670 SSFA2P28290 1259 aa17.38■□□□□ 0.37
CLK3-209ENST00000562670 KCNQ4P56696 695 aa17.38■□□□□ 0.37
CLK3-209ENST00000562670 POLA2Q14181 598 aa17.38■□□□□ 0.37
CLK3-209ENST00000562670 RABL6Q3YEC7 729 aaPredicted RBP17.38■□□□□ 0.37
CLK3-209ENST00000562670 PARP10Q53GL7 1025 aa17.38■□□□□ 0.37
CLK3-209ENST00000562670 NLRP10Q86W26 655 aa17.38■□□□□ 0.37
CLK3-209ENST00000562670 PROM2Q8N271 834 aa17.38■□□□□ 0.37
CLK3-209ENST00000562670 KAZALD1Q96I82 304 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms