RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SMIM5Q71RC9 77 aa11.15□□□□□ -0.62
VPS39-205ENST00000562258 ZC3H12CQ9C0D7 883 aaKnown RBP11.15□□□□□ -0.62
VPS39-205ENST00000562258 MADDQ8WXG6 1647 aa11.15□□□□□ -0.62
VPS39-205ENST00000562258 E9PCH4 1651 aa11.15□□□□□ -0.62
VPS39-205ENST00000562258 GIGYF1O75420 1035 aaPredicted RBP11.15□□□□□ -0.63
VPS39-205ENST00000562258 CPLX2Q6PUV4 134 aaKnown RBP11.15□□□□□ -0.63
VPS39-205ENST00000562258 TDO2P48775 406 aa11.14□□□□□ -0.63
VPS39-205ENST00000562258 NPC1L1Q9UHC9 1359 aa11.14□□□□□ -0.63
VPS39-205ENST00000562258 MINDY4BA8MYZ0 360 aa11.14□□□□□ -0.63
VPS39-205ENST00000562258 CDC45O75419 566 aa11.14□□□□□ -0.63
VPS39-205ENST00000562258 SLC5A1P13866 664 aa11.14□□□□□ -0.63
VPS39-205ENST00000562258 AAMPQ13685 434 aa11.14□□□□□ -0.63
VPS39-205ENST00000562258 TTLL12Q14166 644 aaPredicted RBP11.14□□□□□ -0.63
VPS39-205ENST00000562258 TMOD2Q9NZR1 351 aa11.14□□□□□ -0.63
VPS39-205ENST00000562258 SH3TC1Q8TE82 1336 aa11.14□□□□□ -0.63
VPS39-205ENST00000562258 IGSF1Q8N6C5 1336 aa11.13□□□□□ -0.63
VPS39-205ENST00000562258 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.13□□□□□ -0.63
VPS39-205ENST00000562258 USPL1Q5W0Q7 1092 aa11.13□□□□□ -0.63
VPS39-205ENST00000562258 CCAR1Q8IX12 1150 aaKnown RBP11.13□□□□□ -0.63
VPS39-205ENST00000562258 PTPRUQ92729 1446 aa11.13□□□□□ -0.63
VPS39-205ENST00000562258 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.13□□□□□ -0.63
VPS39-205ENST00000562258 EN1Q05925 392 aaPredicted RBP11.13□□□□□ -0.63
VPS39-205ENST00000562258 AIDAQ96BJ3 306 aa11.13□□□□□ -0.63
VPS39-205ENST00000562258 H3BQV1 296 aa11.13□□□□□ -0.63
VPS39-205ENST00000562258 GOLIM4O00461 696 aa11.13□□□□□ -0.63
VPS39-205ENST00000562258 IFFO2Q5TF58 517 aa11.13□□□□□ -0.63
VPS39-205ENST00000562258 BCS1LQ9Y276 419 aa11.13□□□□□ -0.63
VPS39-205ENST00000562258 ZNF594Q96JF6 807 aaPredicted RBP11.13□□□□□ -0.63
VPS39-205ENST00000562258 CLEC11AQ9Y240 323 aa11.13□□□□□ -0.63
VPS39-205ENST00000562258 USP19O94966 1318 aa11.12□□□□□ -0.63
VPS39-205ENST00000562258 PSDA5PKW4 1024 aaPredicted RBP11.12□□□□□ -0.63
VPS39-205ENST00000562258 CRKLP46109 303 aaKnown RBP11.12□□□□□ -0.63
VPS39-205ENST00000562258 NYXQ9GZU5 481 aa11.12□□□□□ -0.63
VPS39-205ENST00000562258 UNC13BO14795 1591 aa11.12□□□□□ -0.63
VPS39-205ENST00000562258 MX1P20591 662 aa11.12□□□□□ -0.63
VPS39-205ENST00000562258 PROSER3Q2NL68 480 aa11.12□□□□□ -0.63
VPS39-205ENST00000562258 PIK3C2BO00750 1634 aa11.12□□□□□ -0.63
VPS39-205ENST00000562258 SYNMO15061 1565 aa11.12□□□□□ -0.63
VPS39-205ENST00000562258 USP5P45974 858 aa11.12□□□□□ -0.63
VPS39-205ENST00000562258 NACAP1Q9BZK3 213 aa11.12□□□□□ -0.63
VPS39-205ENST00000562258 ATP2B1P20020 1258 aa11.11□□□□□ -0.63
VPS39-205ENST00000562258 GPR162Q16538 588 aa11.11□□□□□ -0.63
VPS39-205ENST00000562258 PIBF1Q8WXW3 757 aa11.11□□□□□ -0.63
VPS39-205ENST00000562258 SPHKAPQ2M3C7 1700 aa11.11□□□□□ -0.63
VPS39-205ENST00000562258 SF3A1Q15459 793 aaKnown RBP11.11□□□□□ -0.63
VPS39-205ENST00000562258 ATP2B3Q16720 1220 aa11.11□□□□□ -0.63
VPS39-205ENST00000562258 PLBD2Q8NHP8 589 aa11.11□□□□□ -0.63
VPS39-205ENST00000562258 JDP2Q8WYK2 163 aa11.11□□□□□ -0.63
VPS39-205ENST00000562258 NOP58Q9Y2X3 529 aaKnown RBP11.11□□□□□ -0.63
VPS39-205ENST00000562258 PCDHB15Q9Y5E8 787 aa11.11□□□□□ -0.63
VPS39-205ENST00000562258 CEP170BQ9Y4F5 1589 aaPredicted RBP11.11□□□□□ -0.63
VPS39-205ENST00000562258 TNS3Q68CZ2 1445 aa11.11□□□□□ -0.63
VPS39-205ENST00000562258 NBPF7P0C2Y1 421 aaPredicted RBP11.11□□□□□ -0.63
VPS39-205ENST00000562258 NEK4P51957 841 aa11.11□□□□□ -0.63
VPS39-205ENST00000562258 ATP7BP35670 1465 aa11.11□□□□□ -0.63
VPS39-205ENST00000562258 ALDH1L1O75891 902 aa11.1□□□□□ -0.63
VPS39-205ENST00000562258 TIMM10P62072 90 aa11.1□□□□□ -0.63
VPS39-205ENST00000562258 C22orf23Q9BZE7 217 aa11.1□□□□□ -0.63
VPS39-205ENST00000562258 GZF1Q9H116 711 aaPredicted RBP11.1□□□□□ -0.63
VPS39-205ENST00000562258 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.1□□□□□ -0.632e-8■■□□□ 13
VPS39-205ENST00000562258 ZBTB7AO95365 584 aa11.1□□□□□ -0.63
VPS39-205ENST00000562258 BICC1Q9H694 974 aaKnown RBP11.1□□□□□ -0.63
VPS39-205ENST00000562258 GJA3Q9Y6H8 435 aa11.1□□□□□ -0.63
VPS39-205ENST00000562258 ANKARQ7Z5J8 1434 aa11.1□□□□□ -0.63
VPS39-205ENST00000562258 MPHOSPH10O00566 681 aaKnown RBP11.1□□□□□ -0.63
VPS39-205ENST00000562258 TAF5LO75529 589 aa11.1□□□□□ -0.63
VPS39-205ENST00000562258 GLRX3O76003 335 aaKnown RBP11.1□□□□□ -0.63
VPS39-205ENST00000562258 CRACR2BQ8N4Y2 399 aaPredicted RBP11.1□□□□□ -0.63
VPS39-205ENST00000562258 SRP68Q9UHB9 627 aaKnown RBP11.1□□□□□ -0.63
VPS39-205ENST00000562258 LMTK2Q8IWU2 1503 aa11.1□□□□□ -0.63
VPS39-205ENST00000562258 POLR3DP05423 398 aaPredicted RBP11.09□□□□□ -0.63
VPS39-205ENST00000562258 H0YIN7 160 aa11.09□□□□□ -0.63
VPS39-205ENST00000562258 MAP3K12Q12852 859 aa11.09□□□□□ -0.63
VPS39-205ENST00000562258 RHPN1Q8TCX5 695 aa11.09□□□□□ -0.63
VPS39-205ENST00000562258 VPS37CA5D8V6 355 aaPredicted RBP11.09□□□□□ -0.63
VPS39-205ENST00000562258 ECM2O94769 699 aaPredicted RBP11.09□□□□□ -0.63
VPS39-205ENST00000562258 NUP133Q8WUM0 1156 aa11.09□□□□□ -0.63
VPS39-205ENST00000562258 METTL22Q9BUU2 404 aaPredicted RBP11.09□□□□□ -0.63
VPS39-205ENST00000562258 AATKQ6ZMQ8 1374 aa11.09□□□□□ -0.63
VPS39-205ENST00000562258 STK3Q13188 491 aa11.09□□□□□ -0.63
VPS39-205ENST00000562258 CDK11BP21127 795 aaKnown RBP11.08□□□□□ -0.64
VPS39-205ENST00000562258 DEFB132Q7Z7B7 95 aa11.08□□□□□ -0.64
VPS39-205ENST00000562258 C16orf71Q8IYS4 520 aaPredicted RBP11.08□□□□□ -0.64
VPS39-205ENST00000562258 OGFOD1Q8N543 542 aa11.08□□□□□ -0.64
VPS39-205ENST00000562258 KIF3AQ9Y496 699 aa11.08□□□□□ -0.64
VPS39-205ENST00000562258 IGHDP01880 384 aa11.08□□□□□ -0.64
VPS39-205ENST00000562258 SLC3A2P08195 630 aaKnown RBP11.08□□□□□ -0.64
VPS39-205ENST00000562258 FRMPD1Q5SYB0 1578 aa11.08□□□□□ -0.64
VPS39-205ENST00000562258 ITGA6P23229 1130 aa11.08□□□□□ -0.64
VPS39-205ENST00000562258 SART3Q15020 963 aaKnown RBP11.08□□□□□ -0.64
VPS39-205ENST00000562258 ZSCAN25Q6NSZ9 544 aa11.08□□□□□ -0.64
VPS39-205ENST00000562258 RAB11FIP3O75154 756 aa11.07□□□□□ -0.64
VPS39-205ENST00000562258 ARHGAP45Q92619 1136 aa11.07□□□□□ -0.64
VPS39-205ENST00000562258 ECHDC1Q9NTX5 307 aa11.07□□□□□ -0.64
VPS39-205ENST00000562258 TRIM29Q14134 588 aa11.07□□□□□ -0.64
VPS39-205ENST00000562258 HIP1O00291 1037 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 UFL1O94874 794 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 TCIRG1Q13488 830 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 PARP10Q53GL7 1025 aa11.06□□□□□ -0.64
VPS39-205ENST00000562258 CREBRFQ8IUR6 639 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms