RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ATG3Q9NT62 314 aa9.23□□□□□ -0.93
VPS39-204ENST00000561818 LRRFIP2Q9Y608 721 aaKnown RBP9.23□□□□□ -0.93
VPS39-204ENST00000561818 SPATA31A1Q5TZJ5 1347 aa9.23□□□□□ -0.93
VPS39-204ENST00000561818 CICQ96RK0 1608 aaPredicted RBP9.23□□□□□ -0.93
VPS39-204ENST00000561818 MX1P20591 662 aa9.22□□□□□ -0.93
VPS39-204ENST00000561818 TRIM28Q13263 835 aaKnown RBP9.22□□□□□ -0.93
VPS39-204ENST00000561818 PLEKHM2Q8IWE5 1019 aa9.22□□□□□ -0.93
VPS39-204ENST00000561818 NECTIN2Q92692 538 aa9.22□□□□□ -0.93
VPS39-204ENST00000561818 C22orf23Q9BZE7 217 aa9.22□□□□□ -0.93
VPS39-204ENST00000561818 USP42Q9H9J4 1324 aaKnown RBP9.22□□□□□ -0.93
VPS39-204ENST00000561818 NRAPQ86VF7 1730 aa9.22□□□□□ -0.93
VPS39-204ENST00000561818 SHANK3Q9BYB0 1731 aa9.22□□□□□ -0.93
VPS39-204ENST00000561818 BCL9O00512 1426 aa9.22□□□□□ -0.93
VPS39-204ENST00000561818 C5P01031 1676 aa9.21□□□□□ -0.93
VPS39-204ENST00000561818 NEURL1BA8MQ27 555 aa9.21□□□□□ -0.94
VPS39-204ENST00000561818 GLRX3O76003 335 aaKnown RBP9.21□□□□□ -0.94
VPS39-204ENST00000561818 OS9Q13438 667 aaPredicted RBP9.21□□□□□ -0.94
VPS39-204ENST00000561818 GCKRQ14397 625 aa9.21□□□□□ -0.94
VPS39-204ENST00000561818 PDIA6Q15084 440 aa9.21□□□□□ -0.94
VPS39-204ENST00000561818 DDB1Q16531 1140 aa9.21□□□□□ -0.94
VPS39-204ENST00000561818 COPS6Q7L5N1 327 aa9.21□□□□□ -0.94
VPS39-204ENST00000561818 PPP1R42Q7Z4L9 355 aa9.21□□□□□ -0.94
VPS39-204ENST00000561818 CNTROBQ8N137 903 aa9.21□□□□□ -0.94
VPS39-204ENST00000561818 DDX54Q8TDD1 881 aaKnown RBP9.21□□□□□ -0.94
VPS39-204ENST00000561818 XAGE3Q8WTP9 111 aa9.21□□□□□ -0.94
VPS39-204ENST00000561818 RUFY2Q8WXA3 655 aa9.21□□□□□ -0.94
VPS39-204ENST00000561818 AK7Q96M32 723 aa9.21□□□□□ -0.94
VPS39-204ENST00000561818 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.21□□□□□ -0.94
VPS39-204ENST00000561818 SPATA31A5Q5VU36 1347 aa9.21□□□□□ -0.94
VPS39-204ENST00000561818 SPATA31A7Q8IWB4 1347 aa9.21□□□□□ -0.94
VPS39-204ENST00000561818 ZNF831Q5JPB2 1677 aa9.2□□□□□ -0.94
VPS39-204ENST00000561818 KCNQ3O43525 872 aa9.2□□□□□ -0.94
VPS39-204ENST00000561818 SURF6O75683 361 aaKnown RBP9.2□□□□□ -0.94
VPS39-204ENST00000561818 MCM2P49736 904 aa9.2□□□□□ -0.94
VPS39-204ENST00000561818 PDE1AP54750 535 aa9.2□□□□□ -0.94
VPS39-204ENST00000561818 G3BP1Q13283 466 aaKnown RBP eCLIP9.2□□□□□ -0.94
VPS39-204ENST00000561818 LRRFIP1Q32MZ4 808 aaKnown RBP9.2□□□□□ -0.94
VPS39-204ENST00000561818 HSCBQ8IWL3 235 aa9.2□□□□□ -0.94
VPS39-204ENST00000561818 CWC25Q9NXE8 425 aaPredicted RBP9.2□□□□□ -0.94
VPS39-204ENST00000561818 RFX7Q2KHR2 1363 aa9.2□□□□□ -0.94
VPS39-204ENST00000561818 ERVV-1B6SEH8 477 aa9.19□□□□□ -0.94
VPS39-204ENST00000561818 UBAP1LF5GYI3 381 aa9.19□□□□□ -0.94
VPS39-204ENST00000561818 ANAPC15P60006 121 aa9.19□□□□□ -0.94
VPS39-204ENST00000561818 SLC39A6Q13433 755 aa9.19□□□□□ -0.94
VPS39-204ENST00000561818 VPS72Q15906 364 aa9.19□□□□□ -0.94
VPS39-204ENST00000561818 RABL6Q3YEC7 729 aaPredicted RBP9.19□□□□□ -0.94
VPS39-204ENST00000561818 UNC5CLQ8IV45 518 aa9.19□□□□□ -0.94
VPS39-204ENST00000561818 RHPN1Q8TCX5 695 aa9.19□□□□□ -0.94
VPS39-204ENST00000561818 SNX21Q969T3 373 aa9.19□□□□□ -0.94
VPS39-204ENST00000561818 ANP32EQ9BTT0 268 aa9.19□□□□□ -0.94
VPS39-204ENST00000561818 GLI3P10071 1580 aa9.19□□□□□ -0.94
VPS39-204ENST00000561818 A0A087WZG4 1122 aa9.18□□□□□ -0.94
VPS39-204ENST00000561818 IFIT2P09913 472 aaKnown RBP9.18□□□□□ -0.94
VPS39-204ENST00000561818 MYL6BP14649 208 aa9.18□□□□□ -0.94
VPS39-204ENST00000561818 PTMSP20962 102 aa9.18□□□□□ -0.94
VPS39-204ENST00000561818 IL6STP40189 918 aaPredicted RBP9.18□□□□□ -0.94
VPS39-204ENST00000561818 MFAP1P55081 439 aaKnown RBP9.18□□□□□ -0.94
VPS39-204ENST00000561818 RABEP1Q15276 862 aa9.18□□□□□ -0.94
VPS39-204ENST00000561818 RTL5Q5HYW3 569 aaPredicted RBP9.18□□□□□ -0.94
VPS39-204ENST00000561818 TBC1D9Q6ZT07 1266 aa9.18□□□□□ -0.94
VPS39-204ENST00000561818 LRP10Q7Z4F1 713 aa9.18□□□□□ -0.94
VPS39-204ENST00000561818 RAD50Q92878 1312 aa9.18□□□□□ -0.94
VPS39-204ENST00000561818 SALL3Q9BXA9 1300 aa9.18□□□□□ -0.94
VPS39-204ENST00000561818 GPR108Q9NPR9 543 aa9.18□□□□□ -0.94
VPS39-204ENST00000561818 COPRSQ9NQ92 184 aa9.18□□□□□ -0.94
VPS39-204ENST00000561818 ARFGEF2Q9Y6D5 1785 aa9.18□□□□□ -0.94
VPS39-204ENST00000561818 PNMA6EA0A0J9YXQ4 647 aa9.17□□□□□ -0.94
VPS39-204ENST00000561818 ST18O60284 1047 aa9.17□□□□□ -0.94
VPS39-204ENST00000561818 CIAO1O76071 339 aa9.17□□□□□ -0.94
VPS39-204ENST00000561818 NBPF7P0C2Y1 421 aaPredicted RBP9.17□□□□□ -0.94
VPS39-204ENST00000561818 AIMP1Q12904 312 aaKnown RBP9.17□□□□□ -0.94
VPS39-204ENST00000561818 FNBP4Q8N3X1 1017 aaPredicted RBP9.17□□□□□ -0.94
VPS39-204ENST00000561818 MYD88Q99836 296 aa9.17□□□□□ -0.94
VPS39-204ENST00000561818 ECHDC1Q9NTX5 307 aa9.17□□□□□ -0.94
VPS39-204ENST00000561818 EXOC6BQ9Y2D4 811 aa9.17□□□□□ -0.94
VPS39-204ENST00000561818 ZNF652Q9Y2D9 606 aa9.17□□□□□ -0.94
VPS39-204ENST00000561818 USP16Q9Y5T5 823 aa9.17□□□□□ -0.94
VPS39-204ENST00000561818 MAP3K15Q6ZN16 1313 aa9.16□□□□□ -0.94
VPS39-204ENST00000561818 CDHR2Q9BYE9 1310 aa9.16□□□□□ -0.94
VPS39-204ENST00000561818 IGKV5-2P06315 115 aa9.16□□□□□ -0.94
VPS39-204ENST00000561818 PDIA4P13667 645 aaKnown RBP9.16□□□□□ -0.94
VPS39-204ENST00000561818 SDSP20132 328 aa9.16□□□□□ -0.94
VPS39-204ENST00000561818 PROSER3Q2NL68 480 aa9.16□□□□□ -0.94
VPS39-204ENST00000561818 PARP10Q53GL7 1025 aa9.16□□□□□ -0.94
VPS39-204ENST00000561818 PIGBQ92521 554 aa9.16□□□□□ -0.94
VPS39-204ENST00000561818 PLA2G12BQ9BX93 195 aa9.16□□□□□ -0.94
VPS39-204ENST00000561818 CIZ1Q9ULV3 898 aaPredicted RBP9.16□□□□□ -0.94
VPS39-204ENST00000561818 TOGARAM1Q9Y4F4 1720 aa9.16□□□□□ -0.94
VPS39-204ENST00000561818 ABCC12Q96J65 1359 aa9.15□□□□□ -0.94
VPS39-204ENST00000561818 NUP188Q5SRE5 1749 aa9.15□□□□□ -0.94
VPS39-204ENST00000561818 H7C1W4 665 aa9.15□□□□□ -0.94
VPS39-204ENST00000561818 PCCAP05165 728 aaPredicted RBP9.15□□□□□ -0.94
VPS39-204ENST00000561818 GSPT1P15170 499 aaKnown RBP9.15□□□□□ -0.94
VPS39-204ENST00000561818 IL15P40933 162 aaPredicted RBP9.15□□□□□ -0.94
VPS39-204ENST00000561818 TCIRG1Q13488 830 aa9.15□□□□□ -0.94
VPS39-204ENST00000561818 GIGYF2Q6Y7W6 1299 aaKnown RBP9.15□□□□□ -0.94
VPS39-204ENST00000561818 KIAA1211Q6ZU35 1233 aa9.15□□□□□ -0.94
VPS39-204ENST00000561818 EVI5LQ96CN4 794 aa9.15□□□□□ -0.94
VPS39-204ENST00000561818 BICC1Q9H694 974 aaKnown RBP9.15□□□□□ -0.94
VPS39-204ENST00000561818 AKAP2Q9Y2D5 859 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 133.6 ms