RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 NGEFQ8N5V2 710 aa13.54□□□□□ -0.24
CLK3-205ENST00000561673 ZNF622Q969S3 477 aaKnown RBP eCLIP13.54□□□□□ -0.242e-8■■□□□ 11.4
CLK3-205ENST00000561673 TSPYL4Q9UJ04 414 aa13.54□□□□□ -0.24
CLK3-205ENST00000561673 ADAMTS8Q9UP79 889 aa13.54□□□□□ -0.24
CLK3-205ENST00000561673 PDZRN3Q9UPQ7 1066 aa13.54□□□□□ -0.24
CLK3-205ENST00000561673 ZNF652Q9Y2D9 606 aa13.54□□□□□ -0.24
CLK3-205ENST00000561673 RRP7AQ9Y3A4 280 aaKnown RBP13.54□□□□□ -0.24
CLK3-205ENST00000561673 DLG5Q8TDM6 1919 aa13.54□□□□□ -0.24
CLK3-205ENST00000561673 KIF3CO14782 793 aa13.53□□□□□ -0.24
CLK3-205ENST00000561673 ST5P78524 1137 aa13.53□□□□□ -0.24
CLK3-205ENST00000561673 WDR43Q15061 677 aaKnown RBP eCLIP13.53□□□□□ -0.24
CLK3-205ENST00000561673 NEUROD2Q15784 382 aa13.53□□□□□ -0.24
CLK3-205ENST00000561673 NBPF5PQ86XG9 351 aaPredicted RBP13.53□□□□□ -0.24
CLK3-205ENST00000561673 RNF181Q9P0P0 153 aa13.53□□□□□ -0.24
CLK3-205ENST00000561673 NIP7Q9Y221 180 aaKnown RBP eCLIP13.53□□□□□ -0.24
CLK3-205ENST00000561673 ARFGEF1Q9Y6D6 1849 aa13.53□□□□□ -0.24
CLK3-205ENST00000561673 RGL2O15211 777 aa13.52□□□□□ -0.25
CLK3-205ENST00000561673 RASSF7Q02833 373 aa13.52□□□□□ -0.25
CLK3-205ENST00000561673 LMOD3Q0VAK6 560 aa13.52□□□□□ -0.25
CLK3-205ENST00000561673 RUNDC1Q96C34 613 aa13.52□□□□□ -0.25
CLK3-205ENST00000561673 BABAM1Q9NWV8 329 aa13.52□□□□□ -0.25
CLK3-205ENST00000561673 ERVV-1B6SEH8 477 aa13.51□□□□□ -0.25
CLK3-205ENST00000561673 SRGNP10124 158 aa13.51□□□□□ -0.25
CLK3-205ENST00000561673 MYL6BP14649 208 aa13.51□□□□□ -0.25
CLK3-205ENST00000561673 PRELPP51888 382 aa13.51□□□□□ -0.25
CLK3-205ENST00000561673 TPTE2Q6XPS3 522 aa13.51□□□□□ -0.25
CLK3-205ENST00000561673 TTLL7Q6ZT98 887 aa13.51□□□□□ -0.25
CLK3-205ENST00000561673 TRIM35Q9UPQ4 493 aa13.51□□□□□ -0.25
CLK3-205ENST00000561673 KDM3BQ7LBC6 1761 aa13.5□□□□□ -0.25
CLK3-205ENST00000561673 FAM177BA6PVY3 158 aa13.5□□□□□ -0.25
CLK3-205ENST00000561673 C21orf2O43822 256 aa13.5□□□□□ -0.25
CLK3-205ENST00000561673 NMRK2Q9NPI5 230 aa13.5□□□□□ -0.25
CLK3-205ENST00000561673 ZNF219Q9P2Y4 722 aaPredicted RBP13.5□□□□□ -0.25
CLK3-205ENST00000561673 BCORQ6W2J9 1755 aa13.5□□□□□ -0.25
CLK3-205ENST00000561673 MAP3K15Q6ZN16 1313 aa13.49□□□□□ -0.25
CLK3-205ENST00000561673 NFKBIEO00221 500 aa13.49□□□□□ -0.25
CLK3-205ENST00000561673 EIF2S2P20042 333 aaKnown RBP13.49□□□□□ -0.25
CLK3-205ENST00000561673 LMNB1P20700 586 aa13.49□□□□□ -0.25
CLK3-205ENST00000561673 STYK1Q6J9G0 422 aa13.49□□□□□ -0.25
CLK3-205ENST00000561673 CNKSR1Q969H4 720 aa13.49□□□□□ -0.25
CLK3-205ENST00000561673 MASTLQ96GX5 879 aa13.49□□□□□ -0.25
CLK3-205ENST00000561673 ANKRD31Q8N7Z5 1873 aa13.48□□□□□ -0.25
CLK3-205ENST00000561673 KLRG2A4D1S0 409 aaPredicted RBP13.48□□□□□ -0.25
CLK3-205ENST00000561673 CHL1O00533 1208 aa13.48□□□□□ -0.25
CLK3-205ENST00000561673 PDIA6Q15084 440 aa13.48□□□□□ -0.25
CLK3-205ENST00000561673 KIF6Q6ZMV9 814 aa13.48□□□□□ -0.25
CLK3-205ENST00000561673 LAS1LQ9Y4W2 734 aaKnown RBP13.48□□□□□ -0.25
CLK3-205ENST00000561673 DLEC1Q9Y238 1755 aa13.48□□□□□ -0.25
CLK3-205ENST00000561673 ERBB4Q15303 1308 aa13.47□□□□□ -0.25
CLK3-205ENST00000561673 ZEB1P37275 1124 aaPredicted RBP13.47□□□□□ -0.25
CLK3-205ENST00000561673 PROSER3Q2NL68 480 aa13.47□□□□□ -0.25
CLK3-205ENST00000561673 PRPF40BQ6NWY9 871 aaKnown RBP13.47□□□□□ -0.25
CLK3-205ENST00000561673 LRP10Q7Z4F1 713 aa13.47□□□□□ -0.25
CLK3-205ENST00000561673 ZBTB3Q9H5J0 574 aa13.47□□□□□ -0.25
CLK3-205ENST00000561673 LAMB4A4D0S4 1761 aa13.46□□□□□ -0.25
CLK3-205ENST00000561673 TOMM70O94826 608 aa13.46□□□□□ -0.25
CLK3-205ENST00000561673 ANXA1P04083 346 aa13.46□□□□□ -0.25
CLK3-205ENST00000561673 NPR1P16066 1061 aa13.46□□□□□ -0.25
CLK3-205ENST00000561673 GTF2E1P29083 439 aaPredicted RBP13.46□□□□□ -0.25
CLK3-205ENST00000561673 KRT24Q2M2I5 525 aa13.46□□□□□ -0.25
CLK3-205ENST00000561673 NECTIN2Q92692 538 aa13.46□□□□□ -0.25
CLK3-205ENST00000561673 NYXQ9GZU5 481 aa13.46□□□□□ -0.25
CLK3-205ENST00000561673 RRAGCQ9HB90 399 aa13.46□□□□□ -0.25
CLK3-205ENST00000561673 UBN2Q6ZU65 1347 aa13.45□□□□□ -0.26
CLK3-205ENST00000561673 KDM2BQ8NHM5 1336 aa13.45□□□□□ -0.26
CLK3-205ENST00000561673 ZC3H4Q9UPT8 1303 aaKnown RBP13.45□□□□□ -0.26
CLK3-205ENST00000561673 COL11A2P13942 1736 aaPredicted RBP13.45□□□□□ -0.26
CLK3-205ENST00000561673 HSPA6P17066 643 aa13.45□□□□□ -0.26
CLK3-205ENST00000561673 GPTP24298 496 aa13.45□□□□□ -0.26
CLK3-205ENST00000561673 GIGYF2Q6Y7W6 1299 aaKnown RBP13.45□□□□□ -0.26
CLK3-205ENST00000561673 NUTM1Q86Y26 1132 aa13.45□□□□□ -0.26
CLK3-205ENST00000561673 ZNF34Q8IZ26 560 aa13.45□□□□□ -0.26
CLK3-205ENST00000561673 C7orf43Q8WVR3 580 aa13.45□□□□□ -0.26
CLK3-205ENST00000561673 GLTPD2A6NH11 291 aa13.44□□□□□ -0.26
CLK3-205ENST00000561673 APAF1O14727 1248 aa13.44□□□□□ -0.26
CLK3-205ENST00000561673 ERFEQ4G0M1 354 aa13.44□□□□□ -0.26
CLK3-205ENST00000561673 SUSD4Q5VX71 490 aa13.44□□□□□ -0.26
CLK3-205ENST00000561673 SBF1O95248 1867 aa13.44□□□□□ -0.26
CLK3-205ENST00000561673 SOGA3Q5TF21 947 aa13.43□□□□□ -0.26
CLK3-205ENST00000561673 COPS6Q7L5N1 327 aa13.43□□□□□ -0.26
CLK3-205ENST00000561673 CFAP44Q96MT7 982 aa13.43□□□□□ -0.26
CLK3-205ENST00000561673 TAOK3Q9H2K8 898 aa13.43□□□□□ -0.26
CLK3-205ENST00000561673 LTBP3Q9NS15 1303 aa13.42□□□□□ -0.26
CLK3-205ENST00000561673 SLX4Q8IY92 1834 aa13.42□□□□□ -0.26
CLK3-205ENST00000561673 ALDH1B1P30837 517 aa13.42□□□□□ -0.26
CLK3-205ENST00000561673 AIMP1Q12904 312 aaKnown RBP13.42□□□□□ -0.26
CLK3-205ENST00000561673 CRY2Q49AN0 593 aa13.42□□□□□ -0.26
CLK3-205ENST00000561673 CCDC184Q52MB2 194 aa13.42□□□□□ -0.26
CLK3-205ENST00000561673 OLFM4Q6UX06 510 aa13.42□□□□□ -0.26
CLK3-205ENST00000561673 C16orf71Q8IYS4 520 aaPredicted RBP13.42□□□□□ -0.26
CLK3-205ENST00000561673 XAGE3Q8WTP9 111 aa13.42□□□□□ -0.26
CLK3-205ENST00000561673 DDX21Q9NR30 783 aaKnown RBP eCLIP13.42□□□□□ -0.26
CLK3-205ENST00000561673 ABCC12Q96J65 1359 aa13.42□□□□□ -0.26
CLK3-205ENST00000561673 NTSR2O95665 410 aa13.41□□□□□ -0.26
CLK3-205ENST00000561673 ZNF853P0CG23 659 aa13.41□□□□□ -0.26
CLK3-205ENST00000561673 CCDC93Q567U6 631 aa13.41□□□□□ -0.26
CLK3-205ENST00000561673 PPP1R42Q7Z4L9 355 aa13.41□□□□□ -0.26
CLK3-205ENST00000561673 RBM46Q8TBY0 533 aaKnown RBP13.41□□□□□ -0.26
CLK3-205ENST00000561673 MBIPQ9NS73 344 aa13.41□□□□□ -0.26
CLK3-205ENST00000561673 CHPF2Q9P2E5 772 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms