RNA–Protein interactions for RNA: ENST00000561354.1

CARMIL3-204, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 4

Gene CARMIL3, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-204ENST00000561354 NPHP1O15259 732 aa15.83■□□□□ 0.12
CARMIL3-204ENST00000561354 SNRPA1P09661 255 aaKnown RBP15.83■□□□□ 0.12
CARMIL3-204ENST00000561354 SOGA3Q5TF21 947 aa15.83■□□□□ 0.12
CARMIL3-204ENST00000561354 TAOK3Q9H2K8 898 aa15.83■□□□□ 0.12
CARMIL3-204ENST00000561354 DICER1Q9UPY3 1922 aaKnown RBP15.83■□□□□ 0.12
CARMIL3-204ENST00000561354 RGL2O15211 777 aa15.82■□□□□ 0.12
CARMIL3-204ENST00000561354 MASTLQ96GX5 879 aa15.82■□□□□ 0.12
CARMIL3-204ENST00000561354 ZNF219Q9P2Y4 722 aaPredicted RBP15.82■□□□□ 0.12
CARMIL3-204ENST00000561354 BCORQ6W2J9 1755 aa15.82■□□□□ 0.12
CARMIL3-204ENST00000561354 PRPF40BQ6NWY9 871 aaKnown RBP15.81■□□□□ 0.12
CARMIL3-204ENST00000561354 RTF1Q92541 710 aaKnown RBP15.81■□□□□ 0.12
CARMIL3-204ENST00000561354 ZNF652Q9Y2D9 606 aa15.81■□□□□ 0.12
CARMIL3-204ENST00000561354 SLX4Q8IY92 1834 aa15.8■□□□□ 0.12
CARMIL3-204ENST00000561354 HTATSF1O43719 755 aaKnown RBP15.8■□□□□ 0.12
CARMIL3-204ENST00000561354 U2AF1L5P0DN76 240 aaPredicted RBP15.8■□□□□ 0.12
CARMIL3-204ENST00000561354 U2AF1Q01081 240 aaKnown RBP eCLIP15.8■□□□□ 0.12
CARMIL3-204ENST00000561354 COL13A1Q5TAT6 717 aaPredicted RBP15.8■□□□□ 0.12
CARMIL3-204ENST00000561354 NBPF5PQ86XG9 351 aaPredicted RBP15.8■□□□□ 0.12
CARMIL3-204ENST00000561354 PRAMEF22A3QJZ6 481 aa15.79■□□□□ 0.12
CARMIL3-204ENST00000561354 KLRG2A4D1S0 409 aaPredicted RBP15.79■□□□□ 0.12
CARMIL3-204ENST00000561354 PPP2R1AP30153 589 aa15.79■□□□□ 0.12
CARMIL3-204ENST00000561354 PIP4K2AP48426 406 aaPredicted RBP15.79■□□□□ 0.12
CARMIL3-204ENST00000561354 MCM10Q7L590 875 aa15.79■□□□□ 0.12
CARMIL3-204ENST00000561354 C7orf43Q8WVR3 580 aa15.79■□□□□ 0.12
CARMIL3-204ENST00000561354 ARFGEF2Q9Y6D5 1785 aa15.79■□□□□ 0.12
CARMIL3-204ENST00000561354 NPR1P16066 1061 aa15.78■□□□□ 0.12
CARMIL3-204ENST00000561354 TPTE2Q6XPS3 522 aa15.78■□□□□ 0.12
CARMIL3-204ENST00000561354 NBPF26B4DH59 902 aa15.77■□□□□ 0.12
CARMIL3-204ENST00000561354 DDNO94850 711 aaPredicted RBP15.77■□□□□ 0.12
CARMIL3-204ENST00000561354 CHADLQ6NUI6 762 aa15.77■□□□□ 0.12
CARMIL3-204ENST00000561354 NBPF10Q6P3W6 841 aaKnown RBP15.77■□□□□ 0.12
CARMIL3-204ENST00000561354 NBPF15Q8N660 670 aa15.77■□□□□ 0.12
CARMIL3-204ENST00000561354 TAF7Q15545 349 aaPredicted RBP15.76■□□□□ 0.11
CARMIL3-204ENST00000561354 CCDC93Q567U6 631 aa15.76■□□□□ 0.11
CARMIL3-204ENST00000561354 NIP7Q9Y221 180 aaKnown RBP eCLIP15.76■□□□□ 0.11
CARMIL3-204ENST00000561354 IQCA1LA6NCM1 817 aa15.75■□□□□ 0.11
CARMIL3-204ENST00000561354 HSPA1AP0DMV8 641 aaKnown RBP15.75■□□□□ 0.11
CARMIL3-204ENST00000561354 HSPA1BP0DMV9 641 aaKnown RBP15.75■□□□□ 0.11
CARMIL3-204ENST00000561354 DCTN1Q14203 1278 aa15.75■□□□□ 0.11
CARMIL3-204ENST00000561354 L3MBTL3Q96JM7 780 aaPredicted RBP15.75■□□□□ 0.11
CARMIL3-204ENST00000561354 CREBZFQ9NS37 354 aa15.75■□□□□ 0.11
CARMIL3-204ENST00000561354 CACNA1SQ13698 1873 aa15.75■□□□□ 0.11
CARMIL3-204ENST00000561354 FKBP4Q02790 459 aaKnown RBP eCLIP15.74■□□□□ 0.11
CARMIL3-204ENST00000561354 ALDH1B1P30837 517 aa15.73■□□□□ 0.11
CARMIL3-204ENST00000561354 RTKN2Q8IZC4 609 aa15.73■□□□□ 0.11
CARMIL3-204ENST00000561354 TNS4Q8IZW8 715 aa15.73■□□□□ 0.11
CARMIL3-204ENST00000561354 POTEIP0CG38 1075 aa15.72■□□□□ 0.11
CARMIL3-204ENST00000561354 POTEJP0CG39 1038 aa15.72■□□□□ 0.11
CARMIL3-204ENST00000561354 HLFQ16534 295 aa15.72■□□□□ 0.11
CARMIL3-204ENST00000561354 LDHDQ86WU2 507 aa15.72■□□□□ 0.11
CARMIL3-204ENST00000561354 PNISRQ8TF01 805 aaKnown RBP15.72■□□□□ 0.11
CARMIL3-204ENST00000561354 TAF1DQ9H5J8 278 aaPredicted RBP15.72■□□□□ 0.11
CARMIL3-204ENST00000561354 SCN4AP35499 1836 aa15.72■□□□□ 0.11
CARMIL3-204ENST00000561354 ERVV-1B6SEH8 477 aa15.71■□□□□ 0.11
CARMIL3-204ENST00000561354 MIS18AQ9NYP9 233 aa15.71■□□□□ 0.11
CARMIL3-204ENST00000561354 PASKQ96RG2 1323 aa15.7■□□□□ 0.1
CARMIL3-204ENST00000561354 FAM177BA6PVY3 158 aa15.7■□□□□ 0.1
CARMIL3-204ENST00000561354 NEFMP07197 916 aa15.7■□□□□ 0.1
CARMIL3-204ENST00000561354 GTF2E1P29083 439 aaPredicted RBP15.7■□□□□ 0.1
CARMIL3-204ENST00000561354 ZNF277Q9NRM2 450 aaPredicted RBP15.7■□□□□ 0.1
CARMIL3-204ENST00000561354 LAMB4A4D0S4 1761 aa15.7■□□□□ 0.1
CARMIL3-204ENST00000561354 CRY2Q49AN0 593 aa15.69■□□□□ 0.1
CARMIL3-204ENST00000561354 OLFM4Q6UX06 510 aa15.69■□□□□ 0.1
CARMIL3-204ENST00000561354 NYXQ9GZU5 481 aa15.69■□□□□ 0.1
CARMIL3-204ENST00000561354 ZNF541Q9H0D2 1346 aa15.68■□□□□ 0.1
CARMIL3-204ENST00000561354 FZD9O00144 591 aa15.68■□□□□ 0.1
CARMIL3-204ENST00000561354 ITGBL1O95965 494 aaPredicted RBP15.68■□□□□ 0.1
CARMIL3-204ENST00000561354 IARSP41252 1262 aaKnown RBP15.68■□□□□ 0.1
CARMIL3-204ENST00000561354 EIF4A1P60842 406 aaKnown RBP15.68■□□□□ 0.1
CARMIL3-204ENST00000561354 CC2D2BQ6DHV5 1058 aa15.68■□□□□ 0.1
CARMIL3-204ENST00000561354 SYNE4Q8N205 404 aa15.68■□□□□ 0.1
CARMIL3-204ENST00000561354 PSMD1Q99460 953 aa15.68■□□□□ 0.1
CARMIL3-204ENST00000561354 MKRN1Q9UHC7 482 aaKnown RBP15.68■□□□□ 0.1
CARMIL3-204ENST00000561354 HACL1Q9UJ83 578 aa15.68■□□□□ 0.1
CARMIL3-204ENST00000561354 SNED1Q8TER0 1413 aa15.68■□□□□ 0.1
CARMIL3-204ENST00000561354 MAP3K15Q6ZN16 1313 aa15.68■□□□□ 0.1
CARMIL3-204ENST00000561354 KDM3BQ7LBC6 1761 aa15.67■□□□□ 0.1
CARMIL3-204ENST00000561354 CNTNAP1P78357 1384 aa15.67■□□□□ 0.1
CARMIL3-204ENST00000561354 PLEKHF1Q96S99 279 aa15.67■□□□□ 0.1
CARMIL3-204ENST00000561354 IBTKQ9P2D0 1353 aaPredicted RBP15.66■□□□□ 0.1
CARMIL3-204ENST00000561354 HOXA10P31260 410 aaPredicted RBP15.66■□□□□ 0.1
CARMIL3-204ENST00000561354 EPHX2P34913 555 aa15.66■□□□□ 0.1
CARMIL3-204ENST00000561354 GRIPAP1Q4V328 841 aa15.66■□□□□ 0.1
CARMIL3-204ENST00000561354 KIF6Q6ZMV9 814 aa15.66■□□□□ 0.1
CARMIL3-204ENST00000561354 PNMA8AQ86V59 439 aaPredicted RBP15.66■□□□□ 0.1
CARMIL3-204ENST00000561354 GPC2Q8N158 579 aa15.66■□□□□ 0.1
CARMIL3-204ENST00000561354 NGEFQ8N5V2 710 aa15.66■□□□□ 0.1
CARMIL3-204ENST00000561354 RIC1Q4ADV7 1423 aa15.66■□□□□ 0.1
CARMIL3-204ENST00000561354 ABCC12Q96J65 1359 aa15.65■□□□□ 0.1
CARMIL3-204ENST00000561354 DLG5Q8TDM6 1919 aa15.65■□□□□ 0.1
CARMIL3-204ENST00000561354 TMEM88BA6NKF7 163 aa15.65■□□□□ 0.1
CARMIL3-204ENST00000561354 CAPN15O75808 1086 aa15.65■□□□□ 0.1
CARMIL3-204ENST00000561354 NFE2L2Q16236 605 aa15.65■□□□□ 0.1
CARMIL3-204ENST00000561354 EAPPQ56P03 285 aaPredicted RBP15.65■□□□□ 0.1
CARMIL3-204ENST00000561354 TTLL7Q6ZT98 887 aa15.65■□□□□ 0.1
CARMIL3-204ENST00000561354 NUTM1Q86Y26 1132 aa15.65■□□□□ 0.1
CARMIL3-204ENST00000561354 JDP2Q8WYK2 163 aa15.65■□□□□ 0.1
CARMIL3-204ENST00000561354 RRP7AQ9Y3A4 280 aaKnown RBP15.65■□□□□ 0.1
CARMIL3-204ENST00000561354 NUP98P52948 1817 aa15.65■□□□□ 0.1
CARMIL3-204ENST00000561354 ERBB4Q15303 1308 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms