RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 SLC5A1P13866 664 aa15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 IARSP41252 1262 aaKnown RBP15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 ZSCAN16Q9H4T2 348 aaPredicted RBP15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 RANBP6O60518 1105 aaKnown RBP15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 CTR9Q6PD62 1173 aa15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 STXBP4Q6ZWJ1 553 aa15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 CALML4Q96GE6 196 aa15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 THUMPD2Q9BTF0 503 aaKnown RBP15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 UBA5Q9GZZ9 404 aa15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 EHMT1Q9H9B1 1298 aa15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 GOPCQ9HD26 462 aa15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 PRKCSHP14314 528 aaPredicted RBP15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 GUCY1B3Q02153 619 aa15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 DHX37Q8IY37 1157 aaKnown RBP15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 TOPBP1Q92547 1522 aa15.22■□□□□ 0.03
CSPG4P11-201ENST00000560634 GOLIM4O00461 696 aa15.21■□□□□ 0.03
CSPG4P11-201ENST00000560634 KIF5BP33176 963 aa15.21■□□□□ 0.03
CSPG4P11-201ENST00000560634 DZIP1Q86YF9 867 aaKnown RBP15.21■□□□□ 0.03
CSPG4P11-201ENST00000560634 MYD88Q99836 296 aa15.21■□□□□ 0.03
CSPG4P11-201ENST00000560634 CTNNBL1Q8WYA6 563 aaPredicted RBP15.21■□□□□ 0.03
CSPG4P11-201ENST00000560634 DDX12PQ92771 950 aa15.21■□□□□ 0.03
CSPG4P11-201ENST00000560634 CCDC8Q9H0W5 538 aaPredicted RBP15.21■□□□□ 0.03
CSPG4P11-201ENST00000560634 CCDC171Q6TFL3 1326 aa15.21■□□□□ 0.03
CSPG4P11-201ENST00000560634 TUBB4AP04350 444 aa15.21■□□□□ 0.03
CSPG4P11-201ENST00000560634 IFI16Q16666 785 aaKnown RBP15.21■□□□□ 0.03
CSPG4P11-201ENST00000560634 BBXQ8WY36 941 aaPredicted RBP15.21■□□□□ 0.03
CSPG4P11-201ENST00000560634 FSD2A1L4K1 749 aa15.21■□□□□ 0.02
CSPG4P11-201ENST00000560634 GJB2P29033 226 aa15.21■□□□□ 0.02
CSPG4P11-201ENST00000560634 UBA7P41226 1012 aa15.21■□□□□ 0.02
CSPG4P11-201ENST00000560634 TTF1Q15361 905 aaPredicted RBP15.21■□□□□ 0.02
CSPG4P11-201ENST00000560634 PPM1EQ8WY54 764 aa15.21■□□□□ 0.02
CSPG4P11-201ENST00000560634 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.21■□□□□ 0.02
CSPG4P11-201ENST00000560634 SPINK5Q9NQ38 1064 aaPredicted RBP15.21■□□□□ 0.02
CSPG4P11-201ENST00000560634 BCCIPQ9P287 314 aaKnown RBP eCLIP15.21■□□□□ 0.02
CSPG4P11-201ENST00000560634 USP16Q9Y5T5 823 aa15.21■□□□□ 0.02
CSPG4P11-201ENST00000560634 CCDC40Q4G0X9 1142 aa15.2■□□□□ 0.02
CSPG4P11-201ENST00000560634 MIS18AQ9NYP9 233 aa15.2■□□□□ 0.02
CSPG4P11-201ENST00000560634 TFIP11Q9UBB9 837 aaKnown RBP15.2■□□□□ 0.02
CSPG4P11-201ENST00000560634 SYNJ1O43426 1573 aa15.2■□□□□ 0.02
CSPG4P11-201ENST00000560634 TMCO5BA8MYB1 307 aa15.2■□□□□ 0.02
CSPG4P11-201ENST00000560634 CTNNA2P26232 953 aa15.2■□□□□ 0.02
CSPG4P11-201ENST00000560634 GTF2F1P35269 517 aaKnown RBP eCLIP15.2■□□□□ 0.02
CSPG4P11-201ENST00000560634 TTC21AQ8NDW8 1320 aa15.2■□□□□ 0.02
CSPG4P11-201ENST00000560634 ORC3Q9UBD5 711 aaPredicted RBP15.2■□□□□ 0.02
CSPG4P11-201ENST00000560634 BMP15O95972 392 aa15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 C20orf194Q5TEA3 1177 aa15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 CCDC97Q96F63 343 aaPredicted RBP15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 PRG4Q92954 1404 aaPredicted RBP15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 GNG11P61952 73 aa15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 MACROD2A1Z1Q3 448 aa15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 ANKRD18BA2A2Z9 1011 aa15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 TBC1D9Q6ZT07 1266 aa15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 CCDC82Q8N4S0 544 aa15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 CCDC172P0C7W6 258 aa15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 TRIM27P14373 513 aa15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 CKAP4Q07065 602 aaKnown RBP15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 SPAG1Q07617 926 aa15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 CEP135Q66GS9 1140 aa15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 TMOD3Q9NYL9 352 aa15.19■□□□□ 0.02
CSPG4P11-201ENST00000560634 LDHCP07864 332 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 CEP112Q8N8E3 955 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 TBC1D32Q96NH3 1257 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 PHF23Q9BUL5 403 aaPredicted RBP15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 PLVAPQ9BX97 442 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 IDEP14735 1019 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 ZC3H6P61129 1189 aaKnown RBP15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 UBE4AQ14139 1066 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 CCDC96Q2M329 555 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 C6orf163Q5TEZ5 329 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 NEK1Q96PY6 1258 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 RMND1Q9NWS8 449 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 DNA2P51530 1060 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 CCT2P78371 535 aaKnown RBP15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 FLIIQ13045 1269 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 BICDL1Q6ZP65 573 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 PTCD1O75127 700 aaKnown RBP15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 NBPF7P0C2Y1 421 aaPredicted RBP15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 PPP4R3BQ5MIZ7 849 aa15.18■□□□□ 0.02
CSPG4P11-201ENST00000560634 BIN1O00499 593 aa15.17■□□□□ 0.02
CSPG4P11-201ENST00000560634 NOP2P46087 812 aaKnown RBP15.17■□□□□ 0.02
CSPG4P11-201ENST00000560634 PRDM10Q9NQV6 1147 aa15.17■□□□□ 0.02
CSPG4P11-201ENST00000560634 PPP1R1BQ9UD71 204 aaPredicted RBP15.17■□□□□ 0.02
CSPG4P11-201ENST00000560634 AKR1B10O60218 316 aa15.17■□□□□ 0.02
CSPG4P11-201ENST00000560634 LRSAM1Q6UWE0 723 aa15.17■□□□□ 0.02
CSPG4P11-201ENST00000560634 CEP63Q96MT8 703 aa15.17■□□□□ 0.02
CSPG4P11-201ENST00000560634 N4BP3O15049 544 aa15.17■□□□□ 0.02
CSPG4P11-201ENST00000560634 TCERG1LQ5VWI1 586 aa15.17■□□□□ 0.02
CSPG4P11-201ENST00000560634 CTAGE1Q96RT6 745 aa15.17■□□□□ 0.02
CSPG4P11-201ENST00000560634 F6X3S4 739 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 MAATS1Q7Z4T9 603 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 KRT222Q8N1A0 295 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 NCOA7Q8NI08 942 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 SCLT1Q96NL6 688 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 GDPD2Q9HCC8 539 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 IL16Q14005 1332 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 LMAN1P49257 510 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 TMEM67Q5HYA8 995 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 FERMT1Q9BQL6 677 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 HOMER2Q9NSB8 354 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms