RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CCDC146Q8IYE0 955 aa13.47□□□□□ -0.25
LDLR-214ENST00000560628 RRAGCQ9HB90 399 aa13.47□□□□□ -0.25
LDLR-214ENST00000560628 PDZRN3Q9UPQ7 1066 aa13.47□□□□□ -0.25
LDLR-214ENST00000560628 ARFGEF1Q9Y6D6 1849 aa13.47□□□□□ -0.25
LDLR-214ENST00000560628 MYBBP1AQ9BQG0 1328 aaKnown RBP13.46□□□□□ -0.25
LDLR-214ENST00000560628 NFKBIEO00221 500 aa13.46□□□□□ -0.25
LDLR-214ENST00000560628 LMNB1P20700 586 aa13.46□□□□□ -0.25
LDLR-214ENST00000560628 TPTE2Q6XPS3 522 aa13.46□□□□□ -0.25
LDLR-214ENST00000560628 TSPYL4Q9UJ04 414 aa13.46□□□□□ -0.25
LDLR-214ENST00000560628 KDM2BQ8NHM5 1336 aa13.45□□□□□ -0.26
LDLR-214ENST00000560628 TOMM70O94826 608 aa13.45□□□□□ -0.26
LDLR-214ENST00000560628 SRGNP10124 158 aa13.45□□□□□ -0.26
LDLR-214ENST00000560628 STYK1Q6J9G0 422 aa13.45□□□□□ -0.26
LDLR-214ENST00000560628 TTLL7Q6ZT98 887 aa13.45□□□□□ -0.26
LDLR-214ENST00000560628 CNKSR1Q969H4 720 aa13.45□□□□□ -0.26
LDLR-214ENST00000560628 SCN7AQ01118 1682 aa13.44□□□□□ -0.26
LDLR-214ENST00000560628 EIF2S2P20042 333 aaKnown RBP13.44□□□□□ -0.26
LDLR-214ENST00000560628 C16orf71Q8IYS4 520 aaPredicted RBP13.44□□□□□ -0.26
LDLR-214ENST00000560628 MASTLQ96GX5 879 aa13.44□□□□□ -0.26
LDLR-214ENST00000560628 DLG5Q8TDM6 1919 aa13.44□□□□□ -0.26
LDLR-214ENST00000560628 GTF2E1P29083 439 aaPredicted RBP13.43□□□□□ -0.26
LDLR-214ENST00000560628 WDR43Q15061 677 aaKnown RBP eCLIP13.43□□□□□ -0.26
LDLR-214ENST00000560628 PRPF40BQ6NWY9 871 aaKnown RBP13.43□□□□□ -0.26
LDLR-214ENST00000560628 KIF6Q6ZMV9 814 aa13.43□□□□□ -0.26
LDLR-214ENST00000560628 ZBTB3Q9H5J0 574 aa13.43□□□□□ -0.26
LDLR-214ENST00000560628 ADAMTS8Q9UP79 889 aa13.43□□□□□ -0.26
LDLR-214ENST00000560628 MAP3K15Q6ZN16 1313 aa13.42□□□□□ -0.26
LDLR-214ENST00000560628 ANKRD31Q8N7Z5 1873 aa13.42□□□□□ -0.26
LDLR-214ENST00000560628 ERVV-1B6SEH8 477 aa13.42□□□□□ -0.26
LDLR-214ENST00000560628 RGL2O15211 777 aa13.42□□□□□ -0.26
LDLR-214ENST00000560628 GPTP24298 496 aa13.42□□□□□ -0.26
LDLR-214ENST00000560628 LMOD3Q0VAK6 560 aa13.42□□□□□ -0.26
LDLR-214ENST00000560628 NECTIN2Q92692 538 aa13.42□□□□□ -0.26
LDLR-214ENST00000560628 RUNDC1Q96C34 613 aa13.42□□□□□ -0.26
LDLR-214ENST00000560628 LAS1LQ9Y4W2 734 aaKnown RBP13.42□□□□□ -0.26
LDLR-214ENST00000560628 GLTPD2A6NH11 291 aa13.41□□□□□ -0.26
LDLR-214ENST00000560628 ANXA1P04083 346 aa13.41□□□□□ -0.26
LDLR-214ENST00000560628 NPR1P16066 1061 aa13.41□□□□□ -0.26
LDLR-214ENST00000560628 ERFEQ4G0M1 354 aa13.41□□□□□ -0.26
LDLR-214ENST00000560628 NUTM1Q86Y26 1132 aa13.41□□□□□ -0.26
LDLR-214ENST00000560628 PRKRIP1Q9H875 184 aaPredicted RBP13.41□□□□□ -0.26
LDLR-214ENST00000560628 SBF1O95248 1867 aa13.41□□□□□ -0.26
LDLR-214ENST00000560628 KLRG2A4D1S0 409 aaPredicted RBP13.4□□□□□ -0.26
LDLR-214ENST00000560628 PROSER3Q2NL68 480 aa13.4□□□□□ -0.26
LDLR-214ENST00000560628 OLFM4Q6UX06 510 aa13.4□□□□□ -0.26
LDLR-214ENST00000560628 RBM46Q8TBY0 533 aaKnown RBP13.4□□□□□ -0.26
LDLR-214ENST00000560628 C7orf43Q8WVR3 580 aa13.4□□□□□ -0.26
LDLR-214ENST00000560628 TAOK3Q9H2K8 898 aa13.4□□□□□ -0.26
LDLR-214ENST00000560628 TRIM35Q9UPQ4 493 aa13.4□□□□□ -0.26
LDLR-214ENST00000560628 BCORQ6W2J9 1755 aa13.4□□□□□ -0.26
LDLR-214ENST00000560628 DLEC1Q9Y238 1755 aa13.4□□□□□ -0.26
LDLR-214ENST00000560628 PDIA6Q15084 440 aa13.39□□□□□ -0.27
LDLR-214ENST00000560628 KRT24Q2M2I5 525 aa13.39□□□□□ -0.27
LDLR-214ENST00000560628 SUSD4Q5VX71 490 aa13.39□□□□□ -0.27
LDLR-214ENST00000560628 NYXQ9GZU5 481 aa13.39□□□□□ -0.27
LDLR-214ENST00000560628 BABAM1Q9NWV8 329 aa13.39□□□□□ -0.27
LDLR-214ENST00000560628 KDM3BQ7LBC6 1761 aa13.39□□□□□ -0.27
LDLR-214ENST00000560628 SLX4Q8IY92 1834 aa13.39□□□□□ -0.27
LDLR-214ENST00000560628 ZC3H4Q9UPT8 1303 aaKnown RBP13.39□□□□□ -0.27
LDLR-214ENST00000560628 CHL1O00533 1208 aa13.38□□□□□ -0.27
LDLR-214ENST00000560628 VEGFAP15692 232 aaPredicted RBP13.38□□□□□ -0.27
LDLR-214ENST00000560628 APLP1P51693 650 aa13.38□□□□□ -0.27
LDLR-214ENST00000560628 SOGA3Q5TF21 947 aa13.38□□□□□ -0.27
LDLR-214ENST00000560628 DPY19L2Q6NUT2 758 aa13.38□□□□□ -0.27
LDLR-214ENST00000560628 ZNF34Q8IZ26 560 aa13.38□□□□□ -0.27
LDLR-214ENST00000560628 COL11A2P13942 1736 aaPredicted RBP13.38□□□□□ -0.27
LDLR-214ENST00000560628 ERBB4Q15303 1308 aa13.38□□□□□ -0.27
LDLR-214ENST00000560628 UBN2Q6ZU65 1347 aa13.38□□□□□ -0.27
LDLR-214ENST00000560628 AIMP1Q12904 312 aaKnown RBP13.37□□□□□ -0.27
LDLR-214ENST00000560628 CCDC93Q567U6 631 aa13.37□□□□□ -0.27
LDLR-214ENST00000560628 GIGYF2Q6Y7W6 1299 aaKnown RBP13.37□□□□□ -0.27
LDLR-214ENST00000560628 LRP10Q7Z4F1 713 aa13.37□□□□□ -0.27
LDLR-214ENST00000560628 LTBP3Q9NS15 1303 aa13.37□□□□□ -0.27
LDLR-214ENST00000560628 ABCC12Q96J65 1359 aa13.36□□□□□ -0.27
LDLR-214ENST00000560628 POTECB2RU33 542 aa13.36□□□□□ -0.27
LDLR-214ENST00000560628 ALDH1B1P30837 517 aa13.36□□□□□ -0.27
LDLR-214ENST00000560628 HTRA3P83110 453 aa13.36□□□□□ -0.27
LDLR-214ENST00000560628 FSTL1Q12841 308 aa13.36□□□□□ -0.27
LDLR-214ENST00000560628 COPS6Q7L5N1 327 aa13.36□□□□□ -0.27
LDLR-214ENST00000560628 XAGE3Q8WTP9 111 aa13.36□□□□□ -0.27
LDLR-214ENST00000560628 ZNF277Q9NRM2 450 aaPredicted RBP13.36□□□□□ -0.27
LDLR-214ENST00000560628 DDNO94850 711 aaPredicted RBP13.35□□□□□ -0.27
LDLR-214ENST00000560628 PPP1R42Q7Z4L9 355 aa13.35□□□□□ -0.27
LDLR-214ENST00000560628 CCDC88AQ3V6T2 1871 aa13.35□□□□□ -0.27
LDLR-214ENST00000560628 LAMB4A4D0S4 1761 aa13.35□□□□□ -0.27
LDLR-214ENST00000560628 APAF1O14727 1248 aa13.34□□□□□ -0.27
LDLR-214ENST00000560628 TCERG1O14776 1098 aaKnown RBP13.34□□□□□ -0.27
LDLR-214ENST00000560628 NTSR2O95665 410 aa13.34□□□□□ -0.27
LDLR-214ENST00000560628 FKBP4Q02790 459 aaKnown RBP eCLIP13.34□□□□□ -0.27
LDLR-214ENST00000560628 CRY2Q49AN0 593 aa13.34□□□□□ -0.27
LDLR-214ENST00000560628 C3orf67Q6ZVT6 689 aa13.34□□□□□ -0.27
LDLR-214ENST00000560628 RTKN2Q8IZC4 609 aa13.34□□□□□ -0.27
LDLR-214ENST00000560628 SYNE4Q8N205 404 aa13.34□□□□□ -0.27
LDLR-214ENST00000560628 DNAJC5GQ8N7S2 189 aa13.34□□□□□ -0.27
LDLR-214ENST00000560628 SMC1BQ8NDV3 1235 aa13.34□□□□□ -0.27
LDLR-214ENST00000560628 RPGRQ92834 1020 aaKnown RBP13.34□□□□□ -0.27
LDLR-214ENST00000560628 ZNF428Q96B54 188 aa13.34□□□□□ -0.27
LDLR-214ENST00000560628 PARP10Q53GL7 1025 aa13.33□□□□□ -0.28
LDLR-214ENST00000560628 UTP14AQ9BVJ6 771 aaKnown RBP13.33□□□□□ -0.28
LDLR-214ENST00000560628 DDX21Q9NR30 783 aaKnown RBP eCLIP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms