RNA–Protein interactions for RNA: ENST00000559694.5

CARMIL3-202, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 5

Gene CARMIL3, Length 4,319 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-202ENST00000559694 ZNF772Q68DY9 489 aaPredicted RBP12.78□□□□□ -0.36
CARMIL3-202ENST00000559694 SYAP1Q96A49 352 aaPredicted RBP12.77□□□□□ -0.36
CARMIL3-202ENST00000559694 BABAM1Q9NWV8 329 aa12.77□□□□□ -0.36
CARMIL3-202ENST00000559694 DRC7Q8IY82 874 aa12.77□□□□□ -0.37
CARMIL3-202ENST00000559694 RNF123Q5XPI4 1314 aa12.77□□□□□ -0.37
CARMIL3-202ENST00000559694 IGSF1Q8N6C5 1336 aa12.77□□□□□ -0.37
CARMIL3-202ENST00000559694 FOXD4L6Q3SYB3 417 aaPredicted RBP12.77□□□□□ -0.37
CARMIL3-202ENST00000559694 FOXD4L3Q6VB84 417 aaPredicted RBP12.77□□□□□ -0.37
CARMIL3-202ENST00000559694 UTP14AQ9BVJ6 771 aaKnown RBP12.77□□□□□ -0.37
CARMIL3-202ENST00000559694 USP16Q9Y5T5 823 aa12.77□□□□□ -0.37
CARMIL3-202ENST00000559694 ZC3H13Q5T200 1668 aaKnown RBP12.77□□□□□ -0.37
CARMIL3-202ENST00000559694 EIF4A1P60842 406 aaKnown RBP12.76□□□□□ -0.37
CARMIL3-202ENST00000559694 CCDC152Q4G0S7 254 aa12.76□□□□□ -0.37
CARMIL3-202ENST00000559694 CTDP1Q9Y5B0 961 aaPredicted RBP12.76□□□□□ -0.37
CARMIL3-202ENST00000559694 H3BQV1 296 aa12.76□□□□□ -0.37
CARMIL3-202ENST00000559694 IFFO2Q5TF58 517 aa12.76□□□□□ -0.37
CARMIL3-202ENST00000559694 STK32BQ9NY57 414 aa12.76□□□□□ -0.37
CARMIL3-202ENST00000559694 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.76□□□□□ -0.37
CARMIL3-202ENST00000559694 MX1P20591 662 aa12.76□□□□□ -0.37
CARMIL3-202ENST00000559694 VPS53Q5VIR6 699 aa12.76□□□□□ -0.37
CARMIL3-202ENST00000559694 CWC27Q6UX04 472 aaKnown RBP12.76□□□□□ -0.37
CARMIL3-202ENST00000559694 RIMS1Q86UR5 1692 aaKnown RBP12.76□□□□□ -0.37
CARMIL3-202ENST00000559694 GLRX3O76003 335 aaKnown RBP12.76□□□□□ -0.37
CARMIL3-202ENST00000559694 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 MARCH6O60337 910 aa12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 SLC5A1P13866 664 aa12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 BAG6P46379 1132 aa12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 ZSCAN25Q6NSZ9 544 aa12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 CHMP4CQ96CF2 233 aa12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 FAM89AQ96GI7 184 aa12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 ASAP1Q9ULH1 1129 aa12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 TRIM37O94972 964 aa12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 RLBP1P12271 317 aa12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 ZSCAN29Q8IWY8 852 aaPredicted RBP12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 SNRKQ9NRH2 765 aa12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 CCDC87Q9NVE4 849 aa12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 C1orf167Q5SNV9 1468 aa12.75□□□□□ -0.37
CARMIL3-202ENST00000559694 IRS4O14654 1257 aaPredicted RBP12.74□□□□□ -0.37
CARMIL3-202ENST00000559694 HSPA1LP34931 641 aa12.74□□□□□ -0.37
CARMIL3-202ENST00000559694 MCTP1Q6DN14 999 aa12.74□□□□□ -0.37
CARMIL3-202ENST00000559694 SEPT12Q8IYM1 358 aa12.74□□□□□ -0.37
CARMIL3-202ENST00000559694 NACAP1Q9BZK3 213 aa12.74□□□□□ -0.37
CARMIL3-202ENST00000559694 HOXB7P09629 217 aa12.74□□□□□ -0.37
CARMIL3-202ENST00000559694 ANKRD18AQ8IVF6 992 aa12.74□□□□□ -0.37
CARMIL3-202ENST00000559694 PARP3Q9Y6F1 533 aa12.74□□□□□ -0.37
CARMIL3-202ENST00000559694 PIK3C2BO00750 1634 aa12.74□□□□□ -0.37
CARMIL3-202ENST00000559694 AFF2P51816 1311 aa12.74□□□□□ -0.37
CARMIL3-202ENST00000559694 MROH1Q8NDA8 1641 aa12.74□□□□□ -0.37
CARMIL3-202ENST00000559694 GIGYF1O75420 1035 aaPredicted RBP12.73□□□□□ -0.37
CARMIL3-202ENST00000559694 SF3A1Q15459 793 aaKnown RBP12.73□□□□□ -0.37
CARMIL3-202ENST00000559694 RASSF8Q8NHQ8 419 aa12.73□□□□□ -0.37
CARMIL3-202ENST00000559694 R3HCC1Q9Y3T6 440 aaKnown RBP12.73□□□□□ -0.37
CARMIL3-202ENST00000559694 PCDHB15Q9Y5E8 787 aa12.73□□□□□ -0.37
CARMIL3-202ENST00000559694 NEK4P51957 841 aa12.73□□□□□ -0.37
CARMIL3-202ENST00000559694 NCBP3Q53F19 620 aaKnown RBP12.73□□□□□ -0.37
CARMIL3-202ENST00000559694 KRT27Q7Z3Y8 459 aa12.73□□□□□ -0.37
CARMIL3-202ENST00000559694 NYXQ9GZU5 481 aa12.73□□□□□ -0.37
CARMIL3-202ENST00000559694 NRXN1Q9ULB1 1477 aa12.73□□□□□ -0.37
CARMIL3-202ENST00000559694 RRP9O43818 475 aaKnown RBP12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 POLD1P28340 1107 aa12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 NASPP49321 788 aaPredicted RBP12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 KCNQ4P56696 695 aa12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 ATP2B2Q01814 1243 aa12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 CCDC24Q8N4L8 307 aa12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 PLBD2Q8NHP8 589 aa12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 PA2G4Q9UQ80 394 aaKnown RBP12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 SOS1Q07889 1333 aaPredicted RBP12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 SLC3A2P08195 630 aaKnown RBP12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 PSMA5P28066 241 aa12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 FAM196AQ6ZSG2 479 aa12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 PLEKHF1Q96S99 279 aa12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 FRMPD1Q5SYB0 1578 aa12.72□□□□□ -0.37
CARMIL3-202ENST00000559694 LOC102724428A0A0B4J2F2 783 aa12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 HCLS1P14317 486 aaPredicted RBP12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 SIK1P57059 783 aa12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 HELBQ8NG08 1087 aaPredicted RBP12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 RTL1A6NKG5 1358 aa12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 ESPNB1AK53 854 aa12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 IKQ13123 557 aaPredicted RBP12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 AIDAQ96BJ3 306 aa12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 IQSEC3Q9UPP2 1182 aaPredicted RBP12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 TPM2P07951 284 aa12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 TDO2P48775 406 aa12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 SART3Q15020 963 aaKnown RBP12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 RHPN1Q8TCX5 695 aa12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 NSFL1CQ9UNZ2 370 aaKnown RBP12.71□□□□□ -0.37
CARMIL3-202ENST00000559694 IGHDP01880 384 aa12.71□□□□□ -0.38
CARMIL3-202ENST00000559694 TRIM29Q14134 588 aa12.71□□□□□ -0.38
CARMIL3-202ENST00000559694 TSHZ3Q63HK5 1081 aa12.71□□□□□ -0.38
CARMIL3-202ENST00000559694 USP19O94966 1318 aa12.71□□□□□ -0.38
CARMIL3-202ENST00000559694 NEXMIFQ5QGS0 1516 aa12.71□□□□□ -0.38
CARMIL3-202ENST00000559694 CEP170BQ9Y4F5 1589 aaPredicted RBP12.71□□□□□ -0.38
CARMIL3-202ENST00000559694 MCM4P33991 863 aa12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 DZIP1Q86YF9 867 aaKnown RBP12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 ECHDC1Q9NTX5 307 aa12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 PTCH1Q13635 1447 aa12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 ATP8B2P98198 1209 aa12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 ANKRD44Q8N8A2 993 aa12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 METTL22Q9BUU2 404 aaPredicted RBP12.7□□□□□ -0.38
CARMIL3-202ENST00000559694 PTPRUQ92729 1446 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms