RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 IGSF3O75054 1194 aa12.62□□□□□ -0.39
SPG11-214ENST00000558989 EIF2S2P20042 333 aaKnown RBP12.62□□□□□ -0.39
SPG11-214ENST00000558989 EIF5P55010 431 aaKnown RBP12.62□□□□□ -0.39
SPG11-214ENST00000558989 DDR1Q08345 913 aa12.62□□□□□ -0.39
SPG11-214ENST00000558989 FAM9BQ8IZU0 186 aa12.62□□□□□ -0.39
SPG11-214ENST00000558989 MYL6BP14649 208 aa12.61□□□□□ -0.39
SPG11-214ENST00000558989 KRT24Q2M2I5 525 aa12.61□□□□□ -0.39
SPG11-214ENST00000558989 BCL2L12Q9HB09 334 aa12.61□□□□□ -0.39
SPG11-214ENST00000558989 GOLGB1Q14789 3259 aaKnown RBP12.61□□□□□ -0.39
SPG11-214ENST00000558989 IL6STP40189 918 aaPredicted RBP12.6□□□□□ -0.39
SPG11-214ENST00000558989 DZIP3Q86Y13 1208 aaKnown RBP12.6□□□□□ -0.39
SPG11-214ENST00000558989 SCN7AQ01118 1682 aa12.6□□□□□ -0.39
SPG11-214ENST00000558989 KIF13BQ9NQT8 1826 aa12.6□□□□□ -0.39
SPG11-214ENST00000558989 A0A087WZG4 1122 aa12.6□□□□□ -0.39
SPG11-214ENST00000558989 NBPF26B4DH59 902 aa12.6□□□□□ -0.39
SPG11-214ENST00000558989 GIGYF1O75420 1035 aaPredicted RBP12.6□□□□□ -0.39
SPG11-214ENST00000558989 NFIXQ14938 502 aa12.6□□□□□ -0.39
SPG11-214ENST00000558989 NBPF10Q6P3W6 841 aaKnown RBP12.6□□□□□ -0.39
SPG11-214ENST00000558989 CCDC24Q8N4L8 307 aa12.6□□□□□ -0.39
SPG11-214ENST00000558989 NBPF15Q8N660 670 aa12.6□□□□□ -0.39
SPG11-214ENST00000558989 CD2APQ9Y5K6 639 aa12.6□□□□□ -0.39
SPG11-214ENST00000558989 BCORQ6W2J9 1755 aa12.6□□□□□ -0.39
SPG11-214ENST00000558989 A0A0G2JLW4 131 aa12.59□□□□□ -0.39
SPG11-214ENST00000558989 TBC1D9BQ66K14 1250 aa12.59□□□□□ -0.39
SPG11-214ENST00000558989 NUP98P52948 1817 aa12.58□□□□□ -0.4
SPG11-214ENST00000558989 POLRMTO00411 1230 aaKnown RBP12.58□□□□□ -0.4
SPG11-214ENST00000558989 ANXA1P04083 346 aa12.58□□□□□ -0.4
SPG11-214ENST00000558989 YBX3P16989 372 aaKnown RBP eCLIP12.58□□□□□ -0.4
SPG11-214ENST00000558989 CDK11BP21127 795 aaKnown RBP12.58□□□□□ -0.4
SPG11-214ENST00000558989 FAM177BA6PVY3 158 aa12.58□□□□□ -0.4
SPG11-214ENST00000558989 TM4SF1P30408 202 aa12.58□□□□□ -0.4
SPG11-214ENST00000558989 SAMD1Q6SPF0 538 aaPredicted RBP12.58□□□□□ -0.4
SPG11-214ENST00000558989 CACNA1SQ13698 1873 aa12.58□□□□□ -0.4
SPG11-214ENST00000558989 KIAA1551Q9HCM1 1747 aa12.57□□□□□ -0.4
SPG11-214ENST00000558989 NPHP1O15259 732 aa12.57□□□□□ -0.4
SPG11-214ENST00000558989 SERPINB2P05120 415 aa12.57□□□□□ -0.4
SPG11-214ENST00000558989 HSP90B1P14625 803 aaKnown RBP12.57□□□□□ -0.4
SPG11-214ENST00000558989 YY1P25490 414 aa12.57□□□□□ -0.4
SPG11-214ENST00000558989 ELL2O00472 640 aaPredicted RBP12.56□□□□□ -0.4
SPG11-214ENST00000558989 CAMTA2O94983 1202 aa12.56□□□□□ -0.4
SPG11-214ENST00000558989 DPEP1P16444 411 aa12.56□□□□□ -0.4
SPG11-214ENST00000558989 CHRNA5P30532 468 aa12.56□□□□□ -0.4
SPG11-214ENST00000558989 C10orf71Q711Q0 1435 aa12.56□□□□□ -0.4
SPG11-214ENST00000558989 PXDNLA1KZ92 1463 aa12.56□□□□□ -0.4
SPG11-214ENST00000558989 CHL1O00533 1208 aa12.55□□□□□ -0.4
SPG11-214ENST00000558989 MBIPQ9NS73 344 aa12.55□□□□□ -0.4
SPG11-214ENST00000558989 BRCA1P38398 1863 aaKnown RBP12.55□□□□□ -0.4
SPG11-214ENST00000558989 HLFQ16534 295 aa12.55□□□□□ -0.4
SPG11-214ENST00000558989 PROSER3Q2NL68 480 aa12.55□□□□□ -0.4
SPG11-214ENST00000558989 TTLL7Q6ZT98 887 aa12.55□□□□□ -0.4
SPG11-214ENST00000558989 ZBTB3Q9H5J0 574 aa12.55□□□□□ -0.4
SPG11-214ENST00000558989 BCS1LQ9Y276 419 aa12.55□□□□□ -0.4
SPG11-214ENST00000558989 ANKRD31Q8N7Z5 1873 aa12.55□□□□□ -0.4
SPG11-214ENST00000558989 CARMIL3Q8ND23 1372 aa12.54□□□□□ -0.4
SPG11-214ENST00000558989 AIMP1Q12904 312 aaKnown RBP12.54□□□□□ -0.4
SPG11-214ENST00000558989 TSR2Q969E8 191 aaKnown RBP12.53□□□□□ -0.4
SPG11-214ENST00000558989 ZNF428Q96B54 188 aa12.53□□□□□ -0.4
SPG11-214ENST00000558989 SETDB2Q96T68 719 aa12.53□□□□□ -0.4
SPG11-214ENST00000558989 NRXN2Q9P2S2 1712 aa12.53□□□□□ -0.4
SPG11-214ENST00000558989 GTPBP6O43824 516 aaPredicted RBP12.53□□□□□ -0.4
SPG11-214ENST00000558989 KIF6Q6ZMV9 814 aa12.53□□□□□ -0.4
SPG11-214ENST00000558989 BABAM1Q9NWV8 329 aa12.53□□□□□ -0.4
SPG11-214ENST00000558989 NIP7Q9Y221 180 aaKnown RBP eCLIP12.53□□□□□ -0.4
SPG11-214ENST00000558989 GPTP24298 496 aa12.52□□□□□ -0.41
SPG11-214ENST00000558989 TGFB2P61812 414 aa12.52□□□□□ -0.41
SPG11-214ENST00000558989 GNAI1P63096 354 aa12.52□□□□□ -0.41
SPG11-214ENST00000558989 ZC3H15Q8WU90 426 aaKnown RBP12.52□□□□□ -0.41
SPG11-214ENST00000558989 ZNF652Q9Y2D9 606 aa12.52□□□□□ -0.41
SPG11-214ENST00000558989 HDGFL1Q5TGJ6 251 aa12.51□□□□□ -0.41
SPG11-214ENST00000558989 DUSP27Q5VZP5 1158 aa12.51□□□□□ -0.41
SPG11-214ENST00000558989 PRR5LQ6MZQ0 368 aa12.51□□□□□ -0.41
SPG11-214ENST00000558989 IFT57Q9NWB7 429 aa12.51□□□□□ -0.41
SPG11-214ENST00000558989 CHPF2Q9P2E5 772 aa12.51□□□□□ -0.41
SPG11-214ENST00000558989 ZNF219Q9P2Y4 722 aaPredicted RBP12.51□□□□□ -0.41
SPG11-214ENST00000558989 GRIN3BO60391 1043 aa12.51□□□□□ -0.41
SPG11-214ENST00000558989 CALD1Q05682 793 aaKnown RBP12.51□□□□□ -0.41
SPG11-214ENST00000558989 PDIA6Q15084 440 aa12.51□□□□□ -0.41
SPG11-214ENST00000558989 NBPF5PQ86XG9 351 aaPredicted RBP12.51□□□□□ -0.41
SPG11-214ENST00000558989 WWC1Q8IX03 1113 aa12.51□□□□□ -0.41
SPG11-214ENST00000558989 CNBD1Q8NA66 436 aa12.51□□□□□ -0.41
SPG11-214ENST00000558989 SLC24A3Q9HC58 644 aa12.51□□□□□ -0.41
SPG11-214ENST00000558989 COL11A2P13942 1736 aaPredicted RBP12.5□□□□□ -0.41
SPG11-214ENST00000558989 CCDC88AQ3V6T2 1871 aa12.5□□□□□ -0.41
SPG11-214ENST00000558989 TCERG1O14776 1098 aaKnown RBP12.5□□□□□ -0.41
SPG11-214ENST00000558989 ZNF853P0CG23 659 aa12.5□□□□□ -0.41
SPG11-214ENST00000558989 KCNA3P22001 575 aa12.5□□□□□ -0.41
SPG11-214ENST00000558989 C2CD5Q86YS7 1000 aa12.5□□□□□ -0.41
SPG11-214ENST00000558989 XAGE3Q8WTP9 111 aa12.5□□□□□ -0.41
SPG11-214ENST00000558989 MAP3K15Q6ZN16 1313 aa12.5□□□□□ -0.41
SPG11-214ENST00000558989 DLEC1Q9Y238 1755 aa12.5□□□□□ -0.41
SPG11-214ENST00000558989 ARFGEF1Q9Y6D6 1849 aa12.5□□□□□ -0.41
SPG11-214ENST00000558989 GTF2E1P29083 439 aaPredicted RBP12.49□□□□□ -0.41
SPG11-214ENST00000558989 COPS6Q7L5N1 327 aa12.49□□□□□ -0.41
SPG11-214ENST00000558989 KCTD17Q8N5Z5 321 aa12.49□□□□□ -0.41
SPG11-214ENST00000558989 C8orf58Q8NAV2 365 aa12.49□□□□□ -0.41
SPG11-214ENST00000558989 ZNF622Q969S3 477 aaKnown RBP eCLIP12.49□□□□□ -0.41
SPG11-214ENST00000558989 PIM2Q9P1W9 311 aa12.49□□□□□ -0.41
SPG11-214ENST00000558989 ST5P78524 1137 aa12.48□□□□□ -0.41
SPG11-214ENST00000558989 MKRN4PQ13434 485 aaPredicted RBP12.48□□□□□ -0.41
SPG11-214ENST00000558989 CLEC4GQ6UXB4 293 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms