RNA–Protein interactions for RNA: ENST00000557866.1

SPG11-204, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 468 nt, Biotype non stop decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-204ENST00000557866 NBPF6Q5VWK0 638 aa9.54□□□□□ -0.88
SPG11-204ENST00000557866 NBPF4Q96M43 638 aa9.54□□□□□ -0.88
SPG11-204ENST00000557866 XIRP1Q702N8 1843 aaKnown RBP9.54□□□□□ -0.88
SPG11-204ENST00000557866 MED1Q15648 1581 aaPredicted RBP9.54□□□□□ -0.88
SPG11-204ENST00000557866 CT47B1P0C2W7 299 aaPredicted RBP9.53□□□□□ -0.88
SPG11-204ENST00000557866 ZC3H6P61129 1189 aaKnown RBP9.53□□□□□ -0.88
SPG11-204ENST00000557866 USHBP1Q8N6Y0 703 aa9.53□□□□□ -0.88
SPG11-204ENST00000557866 CABLES1Q8TDN4 633 aa9.53□□□□□ -0.88
SPG11-204ENST00000557866 IFT57Q9NWB7 429 aa9.53□□□□□ -0.88
SPG11-204ENST00000557866 TNS3Q68CZ2 1445 aa9.53□□□□□ -0.88
SPG11-204ENST00000557866 SOS2Q07890 1332 aaPredicted RBP9.53□□□□□ -0.88
SPG11-204ENST00000557866 GPR37O15354 613 aa9.52□□□□□ -0.89
SPG11-204ENST00000557866 CALD1Q05682 793 aaKnown RBP9.52□□□□□ -0.89
SPG11-204ENST00000557866 MCM10Q7L590 875 aa9.52□□□□□ -0.89
SPG11-204ENST00000557866 GPIHBP1Q8IV16 184 aa9.52□□□□□ -0.89
SPG11-204ENST00000557866 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.52□□□□□ -0.89
SPG11-204ENST00000557866 LRRC59Q96AG4 307 aaKnown RBP9.52□□□□□ -0.89
SPG11-204ENST00000557866 MBIPQ9NS73 344 aa9.52□□□□□ -0.89
SPG11-204ENST00000557866 LAS1LQ9Y4W2 734 aaKnown RBP9.52□□□□□ -0.89
SPG11-204ENST00000557866 CRB1P82279 1406 aa9.51□□□□□ -0.89
SPG11-204ENST00000557866 GNAI1P63096 354 aa9.51□□□□□ -0.89
SPG11-204ENST00000557866 METTL3Q86U44 580 aaKnown RBP9.51□□□□□ -0.89
SPG11-204ENST00000557866 TSPYL6Q8N831 410 aa9.51□□□□□ -0.89
SPG11-204ENST00000557866 GAS2L2Q8NHY3 880 aa9.51□□□□□ -0.89
SPG11-204ENST00000557866 ANKRD24Q8TF21 1146 aa9.51□□□□□ -0.89
SPG11-204ENST00000557866 SSH1Q8WYL5 1049 aa9.51□□□□□ -0.89
SPG11-204ENST00000557866 ZNF516Q92618 1163 aa9.51□□□□□ -0.89
SPG11-204ENST00000557866 BCL2L13Q9BXK5 485 aa9.51□□□□□ -0.89
SPG11-204ENST00000557866 TNNQ9UQP3 1299 aa9.51□□□□□ -0.89
SPG11-204ENST00000557866 ALS2Q96Q42 1657 aa9.51□□□□□ -0.89
SPG11-204ENST00000557866 CHL1O00533 1208 aa9.5□□□□□ -0.89
SPG11-204ENST00000557866 VAMP4O75379 141 aa9.5□□□□□ -0.89
SPG11-204ENST00000557866 FECHP22830 423 aa9.5□□□□□ -0.89
SPG11-204ENST00000557866 PDE3AQ14432 1141 aa9.5□□□□□ -0.89
SPG11-204ENST00000557866 KMT5BQ4FZB7 885 aa9.5□□□□□ -0.89
SPG11-204ENST00000557866 PANK1Q8TE04 598 aa9.5□□□□□ -0.89
SPG11-204ENST00000557866 CCDC136Q96JN2 1154 aa9.5□□□□□ -0.89
SPG11-204ENST00000557866 PCDHB3Q9Y5E6 796 aa9.5□□□□□ -0.89
SPG11-204ENST00000557866 PHRF1Q9P1Y6 1649 aaKnown RBP9.49□□□□□ -0.89
SPG11-204ENST00000557866 NCAPD2Q15021 1401 aa9.49□□□□□ -0.89
SPG11-204ENST00000557866 RLBP1P12271 317 aa9.49□□□□□ -0.89
SPG11-204ENST00000557866 COPS2P61201 443 aa9.49□□□□□ -0.89
SPG11-204ENST00000557866 C8orf58Q8NAV2 365 aa9.49□□□□□ -0.89
SPG11-204ENST00000557866 IRX2Q9BZI1 471 aaPredicted RBP9.49□□□□□ -0.89
SPG11-204ENST00000557866 ACTN4O43707 911 aaKnown RBP9.48□□□□□ -0.89
SPG11-204ENST00000557866 HTATSF1O43719 755 aaKnown RBP9.48□□□□□ -0.89
SPG11-204ENST00000557866 CHRNA2Q15822 529 aa9.48□□□□□ -0.89
SPG11-204ENST00000557866 IL17REQ8NFR9 667 aa9.48□□□□□ -0.89
SPG11-204ENST00000557866 FRAT1Q92837 279 aaPredicted RBP9.48□□□□□ -0.89
SPG11-204ENST00000557866 CPDO75976 1380 aa9.48□□□□□ -0.89
SPG11-204ENST00000557866 LTBP4Q8N2S1 1624 aa9.47□□□□□ -0.89
SPG11-204ENST00000557866 ZPR1O75312 459 aa9.47□□□□□ -0.89
SPG11-204ENST00000557866 SLC10A3P09131 477 aa9.47□□□□□ -0.89
SPG11-204ENST00000557866 BRPF1P55201 1214 aaPredicted RBP9.47□□□□□ -0.89
SPG11-204ENST00000557866 KRT24Q2M2I5 525 aa9.47□□□□□ -0.89
SPG11-204ENST00000557866 ALDH1L2Q3SY69 923 aa9.47□□□□□ -0.89
SPG11-204ENST00000557866 PPP1R18Q6NYC8 613 aa9.47□□□□□ -0.89
SPG11-204ENST00000557866 SMC4Q9NTJ3 1288 aa9.47□□□□□ -0.89
SPG11-204ENST00000557866 MIS18AQ9NYP9 233 aa9.47□□□□□ -0.89
SPG11-204ENST00000557866 KIAA0232Q92628 1395 aa9.47□□□□□ -0.89
SPG11-204ENST00000557866 LTN1O94822 1766 aa9.46□□□□□ -0.9
SPG11-204ENST00000557866 GNAT3A8MTJ3 354 aa9.46□□□□□ -0.9
SPG11-204ENST00000557866 ELL2O00472 640 aaPredicted RBP9.46□□□□□ -0.9
SPG11-204ENST00000557866 CFHP08603 1231 aa9.46□□□□□ -0.9
SPG11-204ENST00000557866 RTF1Q92541 710 aaKnown RBP9.46□□□□□ -0.9
SPG11-204ENST00000557866 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.46□□□□□ -0.9
SPG11-204ENST00000557866 DAXXQ9UER7 740 aaPredicted RBP9.46□□□□□ -0.9
SPG11-204ENST00000557866 NOB1Q9ULX3 412 aaKnown RBP9.46□□□□□ -0.9
SPG11-204ENST00000557866 COG6Q9Y2V7 657 aa9.46□□□□□ -0.9
SPG11-204ENST00000557866 MAP3K5Q99683 1374 aa9.46□□□□□ -0.9
SPG11-204ENST00000557866 TRIM27P14373 513 aa9.45□□□□□ -0.9
SPG11-204ENST00000557866 CANXP27824 592 aaKnown RBP9.45□□□□□ -0.9
SPG11-204ENST00000557866 GGCXP38435 758 aa9.45□□□□□ -0.9
SPG11-204ENST00000557866 TWISTNBQ3B726 338 aaPredicted RBP9.45□□□□□ -0.9
SPG11-204ENST00000557866 ZKSCAN2Q63HK3 967 aa9.45□□□□□ -0.9
SPG11-204ENST00000557866 NKX2-3Q8TAU0 364 aa9.45□□□□□ -0.9
SPG11-204ENST00000557866 ZNF428Q96B54 188 aa9.45□□□□□ -0.9
SPG11-204ENST00000557866 TCERG1O14776 1098 aaKnown RBP9.44□□□□□ -0.9
SPG11-204ENST00000557866 PLEKHO1Q53GL0 409 aaPredicted RBP9.44□□□□□ -0.9
SPG11-204ENST00000557866 ZNF530Q6P9A1 599 aaPredicted RBP9.44□□□□□ -0.9
SPG11-204ENST00000557866 BLOC1S3Q6QNY0 202 aa9.44□□□□□ -0.9
SPG11-204ENST00000557866 CLUAP1Q96AJ1 413 aa9.44□□□□□ -0.9
SPG11-204ENST00000557866 LGR6Q9HBX8 967 aa9.44□□□□□ -0.9
SPG11-204ENST00000557866 TSPYL4Q9UJ04 414 aa9.44□□□□□ -0.9
SPG11-204ENST00000557866 KDM2BQ8NHM5 1336 aa9.44□□□□□ -0.9
SPG11-204ENST00000557866 COL18A1P39060 1754 aa9.44□□□□□ -0.9
SPG11-204ENST00000557866 DLG5Q8TDM6 1919 aa9.43□□□□□ -0.9
SPG11-204ENST00000557866 CEMIPQ8WUJ3 1361 aa9.43□□□□□ -0.9
SPG11-204ENST00000557866 AMOTQ4VCS5 1084 aa9.43□□□□□ -0.9
SPG11-204ENST00000557866 AKAP4Q5JQC9 854 aa9.43□□□□□ -0.9
SPG11-204ENST00000557866 ATF7IPQ6VMQ6 1270 aa9.43□□□□□ -0.9
SPG11-204ENST00000557866 DZIP1LQ8IYY4 767 aaKnown RBP9.43□□□□□ -0.9
SPG11-204ENST00000557866 TMUB1Q9BVT8 246 aa9.43□□□□□ -0.9
SPG11-204ENST00000557866 NLRP2Q9NX02 1062 aa9.43□□□□□ -0.9
SPG11-204ENST00000557866 CRYBG1Q9Y4K1 1723 aa9.42□□□□□ -0.9
SPG11-204ENST00000557866 LMO7Q8WWI1 1683 aa9.42□□□□□ -0.9
SPG11-204ENST00000557866 ABCC6O95255 1503 aa9.42□□□□□ -0.9
SPG11-204ENST00000557866 KIF16BQ96L93 1317 aa9.42□□□□□ -0.9
SPG11-204ENST00000557866 MVPQ14764 893 aaKnown RBP9.42□□□□□ -0.9
SPG11-204ENST00000557866 TAF7Q15545 349 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms