RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 GYS1P13807 737 aa16.42■□□□□ 0.22
SHMT2-227ENST00000557269 FLIIQ13045 1269 aa16.42■□□□□ 0.22
SHMT2-227ENST00000557269 MAP3K15Q6ZN16 1313 aa16.42■□□□□ 0.22
SHMT2-227ENST00000557269 ZPR1O75312 459 aa16.41■□□□□ 0.22
SHMT2-227ENST00000557269 FKBP8Q14318 412 aa16.41■□□□□ 0.22
SHMT2-227ENST00000557269 KIF6Q6ZMV9 814 aa16.41■□□□□ 0.22
SHMT2-227ENST00000557269 NPM2Q86SE8 214 aaKnown RBP16.41■□□□□ 0.22
SHMT2-227ENST00000557269 RCAN3Q9UKA8 241 aa16.41■□□□□ 0.22
SHMT2-227ENST00000557269 ZBTB7AO95365 584 aa16.4■□□□□ 0.22
SHMT2-227ENST00000557269 MSL1Q68DK7 614 aa16.4■□□□□ 0.22
SHMT2-227ENST00000557269 ANKRD13DQ6ZTN6 518 aa16.4■□□□□ 0.22
SHMT2-227ENST00000557269 PLBD2Q8NHP8 589 aa16.4■□□□□ 0.22
SHMT2-227ENST00000557269 NOB1Q9ULX3 412 aaKnown RBP16.4■□□□□ 0.22
SHMT2-227ENST00000557269 ADCY9O60503 1353 aa16.39■□□□□ 0.21
SHMT2-227ENST00000557269 BCORQ6W2J9 1755 aa16.39■□□□□ 0.21
SHMT2-227ENST00000557269 ERVV-1B6SEH8 477 aa16.39■□□□□ 0.21
SHMT2-227ENST00000557269 BRPF1P55201 1214 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-227ENST00000557269 SCN7AQ01118 1682 aa16.39■□□□□ 0.21
SHMT2-227ENST00000557269 PI4KAP2A4QPH2 592 aa16.38■□□□□ 0.21
SHMT2-227ENST00000557269 F6X3S4 739 aa16.38■□□□□ 0.21
SHMT2-227ENST00000557269 FKBP5Q13451 457 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-227ENST00000557269 TBC1D9BQ66K14 1250 aa16.38■□□□□ 0.21
SHMT2-227ENST00000557269 KSR2Q6VAB6 950 aa16.38■□□□□ 0.21
SHMT2-227ENST00000557269 PI4KAP1Q8N8J0 262 aa16.38■□□□□ 0.21
SHMT2-227ENST00000557269 MAP3K2Q9Y2U5 619 aa16.38■□□□□ 0.21
SHMT2-227ENST00000557269 CACNA1FO60840 1977 aa16.37■□□□□ 0.21
SHMT2-227ENST00000557269 GIGYF2Q6Y7W6 1299 aaKnown RBP16.37■□□□□ 0.21
SHMT2-227ENST00000557269 RIC3Q7Z5B4 369 aa16.37■□□□□ 0.21
SHMT2-227ENST00000557269 TNNQ9UQP3 1299 aa16.37■□□□□ 0.21
SHMT2-227ENST00000557269 ATF5Q9Y2D1 282 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-227ENST00000557269 NFIXQ14938 502 aa16.36■□□□□ 0.21
SHMT2-227ENST00000557269 BICDL1Q6ZP65 573 aa16.36■□□□□ 0.21
SHMT2-227ENST00000557269 SLC16A10Q8TF71 515 aa16.36■□□□□ 0.21
SHMT2-227ENST00000557269 FRAT1Q92837 279 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-227ENST00000557269 ARFGEF2Q9Y6D5 1785 aa16.36■□□□□ 0.21
SHMT2-227ENST00000557269 DDX58O95786 925 aaKnown RBP16.35■□□□□ 0.21
SHMT2-227ENST00000557269 GPTP24298 496 aa16.35■□□□□ 0.21
SHMT2-227ENST00000557269 TM4SF1P30408 202 aa16.35■□□□□ 0.21
SHMT2-227ENST00000557269 DDR1Q08345 913 aa16.35■□□□□ 0.21
SHMT2-227ENST00000557269 TCIRG1Q13488 830 aa16.35■□□□□ 0.21
SHMT2-227ENST00000557269 CLEC4GQ6UXB4 293 aa16.35■□□□□ 0.21
SHMT2-227ENST00000557269 ZNF34Q8IZ26 560 aa16.35■□□□□ 0.21
SHMT2-227ENST00000557269 NLGN1Q8N2Q7 840 aa16.35■□□□□ 0.21
SHMT2-227ENST00000557269 METTL22Q9BUU2 404 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-227ENST00000557269 MTFR1LQ9H019 292 aa16.35■□□□□ 0.21
SHMT2-227ENST00000557269 PTPRCP08575 1304 aa16.35■□□□□ 0.21
SHMT2-227ENST00000557269 NUP98P52948 1817 aa16.35■□□□□ 0.21
SHMT2-227ENST00000557269 ATP5J2-PTCD1G3V325 749 aa16.34■□□□□ 0.21
SHMT2-227ENST00000557269 RGL2O15211 777 aa16.34■□□□□ 0.21
SHMT2-227ENST00000557269 DNAAF4Q8WXU2 420 aa16.34■□□□□ 0.21
SHMT2-227ENST00000557269 MYD88Q99836 296 aa16.34■□□□□ 0.21
SHMT2-227ENST00000557269 ZNF652Q9Y2D9 606 aa16.34■□□□□ 0.21
SHMT2-227ENST00000557269 UBN2Q6ZU65 1347 aa16.34■□□□□ 0.21
SHMT2-227ENST00000557269 PLIN1O60240 522 aa16.33■□□□□ 0.2
SHMT2-227ENST00000557269 MMP10P09238 476 aa16.33■□□□□ 0.2
SHMT2-227ENST00000557269 TRIM27P14373 513 aa16.33■□□□□ 0.2
SHMT2-227ENST00000557269 PTGER2P43116 358 aa16.33■□□□□ 0.2
SHMT2-227ENST00000557269 SGIP1Q9BQI5 828 aa16.33■□□□□ 0.2
SHMT2-227ENST00000557269 ISCA1Q9BUE6 129 aa16.33■□□□□ 0.2
SHMT2-227ENST00000557269 NIP7Q9Y221 180 aaKnown RBP eCLIP16.33■□□□□ 0.2
SHMT2-227ENST00000557269 KIF16BQ96L93 1317 aa16.33■□□□□ 0.2
SHMT2-227ENST00000557269 ATP10DQ9P241 1426 aa16.33■□□□□ 0.2
SHMT2-227ENST00000557269 IGKV5-2P06315 115 aa16.32■□□□□ 0.2
SHMT2-227ENST00000557269 COL24A1Q17RW2 1714 aa16.32■□□□□ 0.2
SHMT2-227ENST00000557269 ARHGAP45Q92619 1136 aa16.32■□□□□ 0.2
SHMT2-227ENST00000557269 POLRMTO00411 1230 aaKnown RBP16.31■□□□□ 0.2
SHMT2-227ENST00000557269 CWF19L2Q2TBE0 894 aaKnown RBP16.31■□□□□ 0.2
SHMT2-227ENST00000557269 BEND3Q5T5X7 828 aa16.31■□□□□ 0.2
SHMT2-227ENST00000557269 SUSD4Q5VX71 490 aa16.31■□□□□ 0.2
SHMT2-227ENST00000557269 ZKSCAN2Q63HK3 967 aa16.31■□□□□ 0.2
SHMT2-227ENST00000557269 SLC4A10Q6U841 1118 aa16.31■□□□□ 0.2
SHMT2-227ENST00000557269 ATF7IPQ6VMQ6 1270 aa16.31■□□□□ 0.2
SHMT2-227ENST00000557269 NLRP10Q86W26 655 aa16.31■□□□□ 0.2
SHMT2-227ENST00000557269 SETDB2Q96T68 719 aa16.31■□□□□ 0.2
SHMT2-227ENST00000557269 FAM177BA6PVY3 158 aa16.3■□□□□ 0.2
SHMT2-227ENST00000557269 IPO8O15397 1037 aaKnown RBP16.3■□□□□ 0.2
SHMT2-227ENST00000557269 HSP90AB3PQ58FF7 597 aa16.3■□□□□ 0.2
SHMT2-227ENST00000557269 CLUAP1Q96AJ1 413 aa16.3■□□□□ 0.2
SHMT2-227ENST00000557269 API5Q9BZZ5 524 aaKnown RBP16.3■□□□□ 0.2
SHMT2-227ENST00000557269 ANKRD36CQ5JPF3 1778 aa16.3■□□□□ 0.2
SHMT2-227ENST00000557269 NEURL1BA8MQ27 555 aa16.29■□□□□ 0.2
SHMT2-227ENST00000557269 SERPINB2P05120 415 aa16.29■□□□□ 0.2
SHMT2-227ENST00000557269 RLBP1P12271 317 aa16.29■□□□□ 0.2
SHMT2-227ENST00000557269 TRIM28Q13263 835 aaKnown RBP16.29■□□□□ 0.2
SHMT2-227ENST00000557269 CCDC24Q8N4L8 307 aa16.29■□□□□ 0.2
SHMT2-227ENST00000557269 ABCC4O15439 1325 aa16.28■□□□□ 0.2
SHMT2-227ENST00000557269 SYNE4Q8N205 404 aa16.28■□□□□ 0.2
SHMT2-227ENST00000557269 LINS1Q8NG48 757 aa16.28■□□□□ 0.2
SHMT2-227ENST00000557269 JARID2Q92833 1246 aaPredicted RBP16.28■□□□□ 0.2
SHMT2-227ENST00000557269 SPON1Q9HCB6 807 aa16.28■□□□□ 0.2
SHMT2-227ENST00000557269 PARP3Q9Y6F1 533 aa16.28■□□□□ 0.2
SHMT2-227ENST00000557269 CARMIL3Q8ND23 1372 aa16.27■□□□□ 0.2
SHMT2-227ENST00000557269 NTSR2O95665 410 aa16.27■□□□□ 0.2
SHMT2-227ENST00000557269 NEXNQ0ZGT2 675 aa16.27■□□□□ 0.2
SHMT2-227ENST00000557269 C20orf194Q5TEA3 1177 aa16.27■□□□□ 0.2
SHMT2-227ENST00000557269 PANK1Q8TE04 598 aa16.27■□□□□ 0.2
SHMT2-227ENST00000557269 POLD1P28340 1107 aa16.26■□□□□ 0.19
SHMT2-227ENST00000557269 PARP10Q53GL7 1025 aa16.26■□□□□ 0.19
SHMT2-227ENST00000557269 PRR5LQ6MZQ0 368 aa16.26■□□□□ 0.19
SHMT2-227ENST00000557269 NBPF5PQ86XG9 351 aaPredicted RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms