RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 COPS6Q7L5N1 327 aa14.76□□□□□ -0.05
CCDC88C-212ENST00000556767 ZBTB3Q9H5J0 574 aa14.76□□□□□ -0.05
CCDC88C-212ENST00000556767 DDR1Q08345 913 aa14.75□□□□□ -0.05
CCDC88C-212ENST00000556767 TBC1D9BQ66K14 1250 aa14.75□□□□□ -0.05
CCDC88C-212ENST00000556767 XAGE3Q8WTP9 111 aa14.75□□□□□ -0.05
CCDC88C-212ENST00000556767 CDCA7LQ96GN5 454 aa14.75□□□□□ -0.05
CCDC88C-212ENST00000556767 STK31Q9BXU1 1019 aa14.75□□□□□ -0.05
CCDC88C-212ENST00000556767 SCN7AQ01118 1682 aa14.74□□□□□ -0.05
CCDC88C-212ENST00000556767 MAP3K15Q6ZN16 1313 aa14.74□□□□□ -0.05
CCDC88C-212ENST00000556767 NPHP1O15259 732 aa14.74□□□□□ -0.05
CCDC88C-212ENST00000556767 TM4SF1P30408 202 aa14.74□□□□□ -0.05
CCDC88C-212ENST00000556767 SLFN5Q08AF3 891 aa14.74□□□□□ -0.05
CCDC88C-212ENST00000556767 SETDB2Q96T68 719 aa14.74□□□□□ -0.05
CCDC88C-212ENST00000556767 SYT17Q9BSW7 474 aa14.74□□□□□ -0.05
CCDC88C-212ENST00000556767 HYPKQ9NX55 129 aa14.74□□□□□ -0.05
CCDC88C-212ENST00000556767 BCORQ6W2J9 1755 aa14.73□□□□□ -0.05
CCDC88C-212ENST00000556767 SERPINB2P05120 415 aa14.73□□□□□ -0.05
CCDC88C-212ENST00000556767 HLFQ16534 295 aa14.73□□□□□ -0.05
CCDC88C-212ENST00000556767 CLEC4GQ6UXB4 293 aa14.73□□□□□ -0.05
CCDC88C-212ENST00000556767 LRP10Q7Z4F1 713 aa14.73□□□□□ -0.05
CCDC88C-212ENST00000556767 FAM177BA6PVY3 158 aa14.72□□□□□ -0.05
CCDC88C-212ENST00000556767 ERVV-1B6SEH8 477 aa14.72□□□□□ -0.05
CCDC88C-212ENST00000556767 POLRMTO00411 1230 aaKnown RBP14.72□□□□□ -0.05
CCDC88C-212ENST00000556767 VAMP4O75379 141 aa14.72□□□□□ -0.05
CCDC88C-212ENST00000556767 NIP7Q9Y221 180 aaKnown RBP eCLIP14.72□□□□□ -0.05
CCDC88C-212ENST00000556767 PHAXQ9H814 394 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-212ENST00000556767 CD2APQ9Y5K6 639 aa14.71□□□□□ -0.05
CCDC88C-212ENST00000556767 SLC4A2P04920 1241 aa14.7□□□□□ -0.06
CCDC88C-212ENST00000556767 GPTP24298 496 aa14.7□□□□□ -0.06
CCDC88C-212ENST00000556767 ANKRD13DQ6ZTN6 518 aa14.7□□□□□ -0.06
CCDC88C-212ENST00000556767 NLGN2Q8NFZ4 835 aa14.7□□□□□ -0.06
CCDC88C-212ENST00000556767 CARMIL3Q8ND23 1372 aa14.7□□□□□ -0.06
CCDC88C-212ENST00000556767 RGL2O15211 777 aa14.69□□□□□ -0.06
CCDC88C-212ENST00000556767 GIGYF2Q6Y7W6 1299 aaKnown RBP14.69□□□□□ -0.06
CCDC88C-212ENST00000556767 RIC3Q7Z5B4 369 aa14.69□□□□□ -0.06
CCDC88C-212ENST00000556767 NBPF5PQ86XG9 351 aaPredicted RBP14.69□□□□□ -0.06
CCDC88C-212ENST00000556767 CCDC24Q8N4L8 307 aa14.69□□□□□ -0.06
CCDC88C-212ENST00000556767 PLBD2Q8NHP8 589 aa14.69□□□□□ -0.06
CCDC88C-212ENST00000556767 NUP98P52948 1817 aa14.69□□□□□ -0.06
CCDC88C-212ENST00000556767 DCAF8L1A6NGE4 600 aa14.68□□□□□ -0.06
CCDC88C-212ENST00000556767 DDX58O95786 925 aaKnown RBP14.68□□□□□ -0.06
CCDC88C-212ENST00000556767 GTF2E1P29083 439 aaPredicted RBP14.68□□□□□ -0.06
CCDC88C-212ENST00000556767 HSP90AB3PQ58FF7 597 aa14.68□□□□□ -0.06
CCDC88C-212ENST00000556767 PELP1Q8IZL8 1130 aaKnown RBP14.68□□□□□ -0.06
CCDC88C-212ENST00000556767 CNBD1Q8NA66 436 aa14.68□□□□□ -0.06
CCDC88C-212ENST00000556767 AFDNP55196 1824 aaKnown RBP14.67□□□□□ -0.06
CCDC88C-212ENST00000556767 ST5P78524 1137 aa14.67□□□□□ -0.06
CCDC88C-212ENST00000556767 TPTE2Q6XPS3 522 aa14.67□□□□□ -0.06
CCDC88C-212ENST00000556767 WWC3Q9ULE0 1092 aa14.67□□□□□ -0.06
CCDC88C-212ENST00000556767 ZBED9Q6R2W3 1325 aa14.66□□□□□ -0.06
CCDC88C-212ENST00000556767 C10orf71Q711Q0 1435 aa14.66□□□□□ -0.06
CCDC88C-212ENST00000556767 TCIRG1Q13488 830 aa14.66□□□□□ -0.06
CCDC88C-212ENST00000556767 PRR5LQ6MZQ0 368 aa14.66□□□□□ -0.06
CCDC88C-212ENST00000556767 G2E3Q7L622 706 aa14.66□□□□□ -0.06
CCDC88C-212ENST00000556767 ZNF34Q8IZ26 560 aa14.66□□□□□ -0.06
CCDC88C-212ENST00000556767 TRMT2AQ8IZ69 625 aaKnown RBP14.66□□□□□ -0.06
CCDC88C-212ENST00000556767 ATP10DQ9P241 1426 aa14.66□□□□□ -0.06
CCDC88C-212ENST00000556767 A0A0G2JLW4 131 aa14.65□□□□□ -0.06
CCDC88C-212ENST00000556767 TGFB2P61812 414 aa14.65□□□□□ -0.06
CCDC88C-212ENST00000556767 FKBP5Q13451 457 aaPredicted RBP14.65□□□□□ -0.06
CCDC88C-212ENST00000556767 PARP10Q53GL7 1025 aa14.65□□□□□ -0.06
CCDC88C-212ENST00000556767 ZNF428Q96B54 188 aa14.65□□□□□ -0.06
CCDC88C-212ENST00000556767 NYXQ9GZU5 481 aa14.65□□□□□ -0.06
CCDC88C-212ENST00000556767 UBN2Q6ZU65 1347 aa14.65□□□□□ -0.06
CCDC88C-212ENST00000556767 ATP5J2-PTCD1G3V325 749 aa14.64□□□□□ -0.07
CCDC88C-212ENST00000556767 DPEP1P16444 411 aa14.64□□□□□ -0.07
CCDC88C-212ENST00000556767 FLIIQ13045 1269 aa14.64□□□□□ -0.07
CCDC88C-212ENST00000556767 GPR162Q16538 588 aa14.64□□□□□ -0.07
CCDC88C-212ENST00000556767 SUSD4Q5VX71 490 aa14.64□□□□□ -0.07
CCDC88C-212ENST00000556767 KSR2Q6VAB6 950 aa14.64□□□□□ -0.07
CCDC88C-212ENST00000556767 PPP1R42Q7Z4L9 355 aa14.64□□□□□ -0.07
CCDC88C-212ENST00000556767 NUTM1Q86Y26 1132 aa14.64□□□□□ -0.07
CCDC88C-212ENST00000556767 MYD88Q99836 296 aa14.64□□□□□ -0.07
CCDC88C-212ENST00000556767 MAP3K2Q9Y2U5 619 aa14.64□□□□□ -0.07
CCDC88C-212ENST00000556767 NRXN2Q9P2S2 1712 aa14.63□□□□□ -0.07
CCDC88C-212ENST00000556767 PI4KAP2A4QPH2 592 aa14.63□□□□□ -0.07
CCDC88C-212ENST00000556767 CHRNA5P30532 468 aa14.63□□□□□ -0.07
CCDC88C-212ENST00000556767 C2CD5Q86YS7 1000 aa14.63□□□□□ -0.07
CCDC88C-212ENST00000556767 PI4KAP1Q8N8J0 262 aa14.63□□□□□ -0.07
CCDC88C-212ENST00000556767 UTP14AQ9BVJ6 771 aaKnown RBP14.63□□□□□ -0.07
CCDC88C-212ENST00000556767 BCL2L13Q9BXK5 485 aa14.63□□□□□ -0.07
CCDC88C-212ENST00000556767 ANKRD36CQ5JPF3 1778 aa14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 ARFGEF2Q9Y6D5 1785 aa14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 KIF13BQ9NQT8 1826 aa14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 PDE6BP35913 854 aa14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 NEXNQ0ZGT2 675 aa14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 ERFEQ4G0M1 354 aa14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 NLRP10Q86W26 655 aa14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 YTHDC1Q96MU7 727 aaKnown RBP14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 METTL22Q9BUU2 404 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 BRIP1Q9BX63 1249 aa14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 N4BP2Q86UW6 1770 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 PXDNLA1KZ92 1463 aa14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 CACNA1FO60840 1977 aa14.62□□□□□ -0.07
CCDC88C-212ENST00000556767 H0YIN7 160 aa14.61□□□□□ -0.07
CCDC88C-212ENST00000556767 CT47B1P0C2W7 299 aaPredicted RBP14.61□□□□□ -0.07
CCDC88C-212ENST00000556767 SSH1Q8WYL5 1049 aa14.61□□□□□ -0.07
CCDC88C-212ENST00000556767 ISCA1Q9BUE6 129 aa14.61□□□□□ -0.07
CCDC88C-212ENST00000556767 SMC4Q9NTJ3 1288 aa14.61□□□□□ -0.07
CCDC88C-212ENST00000556767 TRMT112Q9UI30 125 aaKnown RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms