RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 ATF3P18847 181 aa14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 SYT1P21579 422 aa14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 ZBTB3Q9H5J0 574 aa14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 PIK3C2BO00750 1634 aa14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 CCT2P78371 535 aaKnown RBP14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 CSPP1Q1MSJ5 1256 aa14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 BICC1Q9H694 974 aaKnown RBP14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 SNX14Q9Y5W7 946 aa14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 AATKQ6ZMQ8 1374 aa14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 DEPDC5O75140 1603 aa14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 PTH1RQ03431 593 aa14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 NMIQ13287 307 aaPredicted RBP14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 CHST3Q7LGC8 479 aa14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 ATP7BP35670 1465 aa14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 A0A087WZG4 1122 aa14.48□□□□□ -0.09
CCDC88C-211ENST00000556726 CABP4P57796 275 aa14.48□□□□□ -0.09
CCDC88C-211ENST00000556726 CCDC129Q6ZRS4 1044 aa14.48□□□□□ -0.09
CCDC88C-211ENST00000556726 TRIM5Q9C035 493 aa14.48□□□□□ -0.09
CCDC88C-211ENST00000556726 ZDHHC9Q9Y397 364 aa14.48□□□□□ -0.09
CCDC88C-211ENST00000556726 ARHGAP31Q2M1Z3 1444 aa14.48□□□□□ -0.09
CCDC88C-211ENST00000556726 AK9Q5TCS8 1911 aa14.48□□□□□ -0.09
CCDC88C-211ENST00000556726 MYO3AQ8NEV4 1616 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 EIF4A1P60842 406 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 ADCK5Q3MIX3 580 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 KIAA1210Q9ULL0 1709 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 KIAA0232Q92628 1395 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 BECN2A8MW95 431 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 ZSCAN22P10073 491 aaPredicted RBP14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 KRT28Q7Z3Y7 464 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 ERC1Q8IUD2 1116 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 DIP2CQ9Y2E4 1556 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 ZC3H13Q5T200 1668 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 USP6P35125 1406 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 GRM8O00222 908 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 ADCY5O95622 1261 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 EVA1CP58658 441 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 HSP90AB3PQ58FF7 597 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 SHPRHQ149N8 1683 aa14.47□□□□□ -0.09
CCDC88C-211ENST00000556726 PSMA5P28066 241 aa14.46□□□□□ -0.09
CCDC88C-211ENST00000556726 TSC1Q92574 1164 aa14.46□□□□□ -0.09
CCDC88C-211ENST00000556726 SPATA32Q96LK8 384 aa14.46□□□□□ -0.09
CCDC88C-211ENST00000556726 COL3A1P02461 1466 aaPredicted RBP14.46□□□□□ -0.09
CCDC88C-211ENST00000556726 CDK12Q9NYV4 1490 aaPredicted RBP14.46□□□□□ -0.09
CCDC88C-211ENST00000556726 SGSM2O43147 1006 aa14.46□□□□□ -0.09
CCDC88C-211ENST00000556726 KRT85P78386 507 aa14.46□□□□□ -0.09
CCDC88C-211ENST00000556726 KCNH5Q8NCM2 988 aa14.46□□□□□ -0.09
CCDC88C-211ENST00000556726 GOLGA6L19H0YKK7 550 aa14.46□□□□□ -0.1
CCDC88C-211ENST00000556726 HAND2P61296 217 aa14.46□□□□□ -0.1
CCDC88C-211ENST00000556726 SASS6Q6UVJ0 657 aa14.46□□□□□ -0.1
CCDC88C-211ENST00000556726 SUCLG2Q96I99 432 aa14.46□□□□□ -0.1
CCDC88C-211ENST00000556726 TLR7Q9NYK1 1049 aaKnown RBP14.46□□□□□ -0.1
CCDC88C-211ENST00000556726 TOM1L2Q6ZVM7 507 aa14.45□□□□□ -0.1
CCDC88C-211ENST00000556726 TNMDQ9H2S6 317 aa14.45□□□□□ -0.1
CCDC88C-211ENST00000556726 TBX22Q9Y458 520 aa14.45□□□□□ -0.1
CCDC88C-211ENST00000556726 GOLIM4O00461 696 aa14.45□□□□□ -0.1
CCDC88C-211ENST00000556726 LARGE1O95461 756 aa14.45□□□□□ -0.1
CCDC88C-211ENST00000556726 KSR2Q6VAB6 950 aa14.45□□□□□ -0.1
CCDC88C-211ENST00000556726 NPHP1O15259 732 aa14.45□□□□□ -0.1
CCDC88C-211ENST00000556726 IP6K1Q92551 441 aa14.45□□□□□ -0.1
CCDC88C-211ENST00000556726 CHMP4CQ96CF2 233 aa14.45□□□□□ -0.1
CCDC88C-211ENST00000556726 PPLO60437 1756 aa14.44□□□□□ -0.1
CCDC88C-211ENST00000556726 IGSF1Q8N6C5 1336 aa14.44□□□□□ -0.1
CCDC88C-211ENST00000556726 RNMTO43148 476 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-211ENST00000556726 BRD1O95696 1058 aa14.44□□□□□ -0.1
CCDC88C-211ENST00000556726 CCDC183Q5T5S1 534 aa14.44□□□□□ -0.1
CCDC88C-211ENST00000556726 SSH3Q8TE77 659 aa14.44□□□□□ -0.1
CCDC88C-211ENST00000556726 CPSF1Q10570 1443 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-211ENST00000556726 ATP2B1P20020 1258 aa14.43□□□□□ -0.1
CCDC88C-211ENST00000556726 AKAP4Q5JQC9 854 aa14.43□□□□□ -0.1
CCDC88C-211ENST00000556726 LARP1Q6PKG0 1096 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-211ENST00000556726 IBTKQ9P2D0 1353 aaPredicted RBP14.43□□□□□ -0.1
CCDC88C-211ENST00000556726 F13A1P00488 732 aa14.43□□□□□ -0.1
CCDC88C-211ENST00000556726 EVI5LQ96CN4 794 aa14.43□□□□□ -0.1
CCDC88C-211ENST00000556726 CPLX1O14810 134 aa14.43□□□□□ -0.1
CCDC88C-211ENST00000556726 BRF1Q92994 677 aa14.43□□□□□ -0.1
CCDC88C-211ENST00000556726 EAF2Q96CJ1 260 aaPredicted RBP14.43□□□□□ -0.1
CCDC88C-211ENST00000556726 SEC62Q99442 399 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-211ENST00000556726 NUP62CLQ9H1M0 184 aa14.43□□□□□ -0.1
CCDC88C-211ENST00000556726 ANAPC15P60006 121 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 BEND3Q5T5X7 828 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 CREB3L3Q68CJ9 461 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 ANKRD13DQ6ZTN6 518 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 RUFY3Q7L099 469 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 GOLGA6L6A8MZA4 724 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 AMOTQ4VCS5 1084 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 LMBR1LQ6UX01 489 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 SDF4Q9BRK5 362 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 PRDM10Q9NQV6 1147 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 HYPKQ9NX55 129 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 MED14O60244 1454 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 CCDC192P0DO97 292 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 HSPA4P34932 840 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 TIMM10P62072 90 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 FILIP1Q7Z7B0 1213 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 PRDM11Q9NQV5 511 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 ATP10DQ9P241 1426 aa14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 ARHGEF28Q8N1W1 1705 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-211ENST00000556726 CHGBP05060 677 aa14.41□□□□□ -0.1
CCDC88C-211ENST00000556726 ME1P48163 572 aa14.41□□□□□ -0.1
CCDC88C-211ENST00000556726 ZNF445P59923 1031 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms