RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 HCN4Q9Y3Q4 1203 aa10.67□□□□□ -0.7
PRPF39-209ENST00000556353 C21orf2O43822 256 aa10.66□□□□□ -0.7
PRPF39-209ENST00000556353 CD33P20138 364 aa10.66□□□□□ -0.7
PRPF39-209ENST00000556353 FAM182BQ5T319 152 aa10.66□□□□□ -0.7
PRPF39-209ENST00000556353 POTEAQ6S8J7 498 aa10.66□□□□□ -0.7
PRPF39-209ENST00000556353 GALNT6Q8NCL4 622 aa10.66□□□□□ -0.7
PRPF39-209ENST00000556353 GAS2L2Q8NHY3 880 aa10.66□□□□□ -0.7
PRPF39-209ENST00000556353 SCG3Q8WXD2 468 aaKnown RBP10.66□□□□□ -0.7
PRPF39-209ENST00000556353 ZMYND15Q9H091 742 aa10.66□□□□□ -0.7
PRPF39-209ENST00000556353 IRS1P35568 1242 aa10.65□□□□□ -0.7
PRPF39-209ENST00000556353 GSK3AP49840 483 aa10.65□□□□□ -0.7
PRPF39-209ENST00000556353 RASSF7Q02833 373 aa10.65□□□□□ -0.7
PRPF39-209ENST00000556353 STAG2Q8N3U4 1231 aa10.65□□□□□ -0.7
PRPF39-209ENST00000556353 C7orf43Q8WVR3 580 aa10.65□□□□□ -0.7
PRPF39-209ENST00000556353 PHACTR1Q9C0D0 580 aa10.65□□□□□ -0.7
PRPF39-209ENST00000556353 GGA1Q9UJY5 639 aa10.65□□□□□ -0.7
PRPF39-209ENST00000556353 ARAFP10398 606 aa10.64□□□□□ -0.71
PRPF39-209ENST00000556353 LAMC2Q13753 1193 aa10.64□□□□□ -0.71
PRPF39-209ENST00000556353 SLCO4C1Q6ZQN7 724 aa10.64□□□□□ -0.71
PRPF39-209ENST00000556353 PODNQ7Z5L7 613 aa10.64□□□□□ -0.71
PRPF39-209ENST00000556353 CHMP7Q8WUX9 453 aaPredicted RBP10.64□□□□□ -0.71
PRPF39-209ENST00000556353 MARK1Q9P0L2 795 aa10.64□□□□□ -0.71
PRPF39-209ENST00000556353 EFSO43281 561 aa10.63□□□□□ -0.71
PRPF39-209ENST00000556353 RFX1P22670 979 aa10.63□□□□□ -0.71
PRPF39-209ENST00000556353 TMEM151AQ8N4L1 468 aa10.63□□□□□ -0.71
PRPF39-209ENST00000556353 BEND7Q8N7W2 519 aaPredicted RBP10.63□□□□□ -0.71
PRPF39-209ENST00000556353 EDARADDQ8WWZ3 215 aa10.63□□□□□ -0.71
PRPF39-209ENST00000556353 C2orf49Q9BVC5 232 aaPredicted RBP10.63□□□□□ -0.71
PRPF39-209ENST00000556353 ANKIB1Q9P2G1 1089 aa10.63□□□□□ -0.71
PRPF39-209ENST00000556353 HCN2Q9UL51 889 aa10.63□□□□□ -0.71
PRPF39-209ENST00000556353 GTF3C3Q9Y5Q9 886 aa10.63□□□□□ -0.71
PRPF39-209ENST00000556353 DNMT3AQ9Y6K1 912 aaPredicted RBP10.63□□□□□ -0.71
PRPF39-209ENST00000556353 PHF20L1A8MW92 1017 aa10.62□□□□□ -0.71
PRPF39-209ENST00000556353 SHISA8B8ZZ34 492 aa10.62□□□□□ -0.71
PRPF39-209ENST00000556353 GDF11O95390 407 aa10.62□□□□□ -0.71
PRPF39-209ENST00000556353 KANK3Q6NY19 840 aa10.62□□□□□ -0.71
PRPF39-209ENST00000556353 C1orf229Q6ZS94 237 aaPredicted RBP10.62□□□□□ -0.71
PRPF39-209ENST00000556353 NEURL1BA8MQ27 555 aa10.61□□□□□ -0.71
PRPF39-209ENST00000556353 CDCA8Q53HL2 280 aa10.61□□□□□ -0.71
PRPF39-209ENST00000556353 ALDH16A1Q8IZ83 802 aa10.61□□□□□ -0.71
PRPF39-209ENST00000556353 ARXQ96QS3 562 aa10.61□□□□□ -0.71
PRPF39-209ENST00000556353 AVENQ9NQS1 362 aaPredicted RBP10.61□□□□□ -0.71
PRPF39-209ENST00000556353 PRR12Q9ULL5 1215 aa10.61□□□□□ -0.71
PRPF39-209ENST00000556353 CNTNAP5Q8WYK1 1306 aa10.6□□□□□ -0.71
PRPF39-209ENST00000556353 LGR5O75473 907 aa10.6□□□□□ -0.71
PRPF39-209ENST00000556353 IGFBP4P22692 258 aa10.6□□□□□ -0.71
PRPF39-209ENST00000556353 ADH6P28332 368 aa10.6□□□□□ -0.71
PRPF39-209ENST00000556353 HSH2DQ96JZ2 352 aa10.6□□□□□ -0.71
PRPF39-209ENST00000556353 STRN4Q9NRL3 753 aa10.6□□□□□ -0.71
PRPF39-209ENST00000556353 AMPD1P23109 780 aa10.59□□□□□ -0.71
PRPF39-209ENST00000556353 FAM200AQ8TCP9 573 aa10.59□□□□□ -0.71
PRPF39-209ENST00000556353 NGLY1Q96IV0 654 aa10.59□□□□□ -0.71
PRPF39-209ENST00000556353 EPXP11678 715 aa10.58□□□□□ -0.72
PRPF39-209ENST00000556353 HIF1AQ16665 826 aa10.58□□□□□ -0.72
PRPF39-209ENST00000556353 ZNF468Q5VIY5 522 aaPredicted RBP10.58□□□□□ -0.72
PRPF39-209ENST00000556353 SUSD3Q96L08 255 aa10.58□□□□□ -0.72
PRPF39-209ENST00000556353 CEP63Q96MT8 703 aa10.58□□□□□ -0.72
PRPF39-209ENST00000556353 RRAGCQ9HB90 399 aa10.58□□□□□ -0.72
PRPF39-209ENST00000556353 NOVA2Q9UNW9 492 aaKnown RBP10.57□□□□□ -0.72
PRPF39-209ENST00000556353 PCBP4P57723 403 aaKnown RBP10.56□□□□□ -0.72
PRPF39-209ENST00000556353 SNRPNP63162 240 aaKnown RBP10.56□□□□□ -0.72
PRPF39-209ENST00000556353 SFSWAPQ12872 951 aaKnown RBP10.56□□□□□ -0.72
PRPF39-209ENST00000556353 ZNF280CQ8ND82 737 aa10.56□□□□□ -0.72
PRPF39-209ENST00000556353 BRD7Q9NPI1 651 aa10.56□□□□□ -0.72
PRPF39-209ENST00000556353 KLF15Q9UIH9 416 aa10.56□□□□□ -0.72
PRPF39-209ENST00000556353 KCTD17Q8N5Z5 321 aa10.55□□□□□ -0.72
PRPF39-209ENST00000556353 MKL2Q9ULH7 1088 aa10.55□□□□□ -0.72
PRPF39-209ENST00000556353 WEE1P30291 646 aa10.54□□□□□ -0.72
PRPF39-209ENST00000556353 TYRO3Q06418 890 aa10.54□□□□□ -0.72
PRPF39-209ENST00000556353 RTN1Q16799 776 aa10.54□□□□□ -0.72
PRPF39-209ENST00000556353 FCHSD1Q86WN1 690 aa10.54□□□□□ -0.72
PRPF39-209ENST00000556353 CCDC97Q96F63 343 aaPredicted RBP10.54□□□□□ -0.72
PRPF39-209ENST00000556353 BTBD6Q96KE9 485 aa10.54□□□□□ -0.72
PRPF39-209ENST00000556353 FOXO3O43524 673 aa10.53□□□□□ -0.72
PRPF39-209ENST00000556353 VTI1AQ96AJ9 217 aa10.53□□□□□ -0.72
PRPF39-209ENST00000556353 NEUROD1Q13562 356 aa10.52□□□□□ -0.73
PRPF39-209ENST00000556353 GRIN2CQ14957 1233 aa10.52□□□□□ -0.73
PRPF39-209ENST00000556353 BTLAQ7Z6A9 289 aa10.52□□□□□ -0.73
PRPF39-209ENST00000556353 SYT9Q86SS6 491 aa10.52□□□□□ -0.73
PRPF39-209ENST00000556353 KCNH4Q9UQ05 1017 aa10.52□□□□□ -0.73
PRPF39-209ENST00000556353 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.51□□□□□ -0.73
PRPF39-209ENST00000556353 KCNQ4P56696 695 aa10.51□□□□□ -0.73
PRPF39-209ENST00000556353 SPEM2Q0P670 501 aa10.51□□□□□ -0.73
PRPF39-209ENST00000556353 ELOAQ14241 798 aaKnown RBP10.51□□□□□ -0.73
PRPF39-209ENST00000556353 CHSY3Q70JA7 882 aa10.51□□□□□ -0.73
PRPF39-209ENST00000556353 SLC30A3Q99726 388 aa10.51□□□□□ -0.73
PRPF39-209ENST00000556353 SWI5Q1ZZU3 235 aa10.5□□□□□ -0.73
PRPF39-209ENST00000556353 IER5Q5VY09 327 aa10.5□□□□□ -0.73
PRPF39-209ENST00000556353 SERPINA10Q9UK55 444 aa10.5□□□□□ -0.73
PRPF39-209ENST00000556353 ACIN1Q9UKV3 1341 aaKnown RBP10.5□□□□□ -0.73
PRPF39-209ENST00000556353 TGFBR3LH3BV60 316 aa10.49□□□□□ -0.73
PRPF39-209ENST00000556353 PIK3R2O00459 728 aa10.49□□□□□ -0.73
PRPF39-209ENST00000556353 SIN3BO75182 1162 aa10.49□□□□□ -0.73
PRPF39-209ENST00000556353 HOXB4P17483 251 aaPredicted RBP10.49□□□□□ -0.73
PRPF39-209ENST00000556353 ZMIZ1Q9ULJ6 1067 aa10.49□□□□□ -0.73
PRPF39-209ENST00000556353 ALAS2P22557 587 aa10.48□□□□□ -0.73
PRPF39-209ENST00000556353 SRPK2P78362 688 aaKnown RBP10.48□□□□□ -0.73
PRPF39-209ENST00000556353 DCAF5Q96JK2 942 aa10.48□□□□□ -0.73
PRPF39-209ENST00000556353 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.48□□□□□ -0.73
PRPF39-209ENST00000556353 ELOA3CA0A087WX78 387 aaPredicted RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms