RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 BACH1O14867 736 aa8.67□□□□□ -1.02
SCFD1-218ENST00000556256 DYRK3O43781 588 aa8.67□□□□□ -1.02
SCFD1-218ENST00000556256 SLC30A3Q99726 388 aa8.67□□□□□ -1.02
SCFD1-218ENST00000556256 PIK3CDO00329 1044 aa8.66□□□□□ -1.02
SCFD1-218ENST00000556256 NOS2P35228 1153 aa8.66□□□□□ -1.02
SCFD1-218ENST00000556256 SFSWAPQ12872 951 aaKnown RBP8.66□□□□□ -1.02
SCFD1-218ENST00000556256 TRIM28Q13263 835 aaKnown RBP8.66□□□□□ -1.02
SCFD1-218ENST00000556256 TEAD4Q15561 434 aa8.66□□□□□ -1.02
SCFD1-218ENST00000556256 C8orf86Q6ZUL3 223 aa8.66□□□□□ -1.02
SCFD1-218ENST00000556256 MICALL1Q8N3F8 863 aa8.66□□□□□ -1.02
SCFD1-218ENST00000556256 PRDM6Q9NQX0 595 aa8.66□□□□□ -1.02
SCFD1-218ENST00000556256 EML1O00423 815 aa8.65□□□□□ -1.02
SCFD1-218ENST00000556256 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.65□□□□□ -1.02
SCFD1-218ENST00000556256 TNFRSF25Q93038 417 aa8.65□□□□□ -1.02
SCFD1-218ENST00000556256 NEUROD4Q9HD90 331 aa8.65□□□□□ -1.02
SCFD1-218ENST00000556256 ZNF358Q9NW07 568 aa8.65□□□□□ -1.02
SCFD1-218ENST00000556256 ALBP02768 609 aa8.64□□□□□ -1.03
SCFD1-218ENST00000556256 SOX11P35716 441 aa8.64□□□□□ -1.03
SCFD1-218ENST00000556256 GRIK4Q16099 956 aa8.64□□□□□ -1.03
SCFD1-218ENST00000556256 ARTNQ5T4W7 220 aa8.64□□□□□ -1.03
SCFD1-218ENST00000556256 EPHA4P54764 986 aa8.63□□□□□ -1.03
SCFD1-218ENST00000556256 EML3Q32P44 896 aa8.63□□□□□ -1.03
SCFD1-218ENST00000556256 ZNF232Q9UNY5 417 aa8.63□□□□□ -1.03
SCFD1-218ENST00000556256 NOD1Q9Y239 953 aa8.63□□□□□ -1.03
SCFD1-218ENST00000556256 NID1P14543 1247 aa8.62□□□□□ -1.03
SCFD1-218ENST00000556256 GTF2IP78347 998 aa8.62□□□□□ -1.03
SCFD1-218ENST00000556256 PRSS36Q5K4E3 855 aa8.62□□□□□ -1.03
SCFD1-218ENST00000556256 TBCELQ5QJ74 424 aa8.62□□□□□ -1.03
SCFD1-218ENST00000556256 NACC1Q96RE7 527 aa8.62□□□□□ -1.03
SCFD1-218ENST00000556256 ZFP64Q9NPA5 681 aa8.62□□□□□ -1.03
SCFD1-218ENST00000556256 ADH7P40394 386 aa8.61□□□□□ -1.03
SCFD1-218ENST00000556256 PSME1Q06323 249 aa8.61□□□□□ -1.03
SCFD1-218ENST00000556256 SPEM2Q0P670 501 aa8.61□□□□□ -1.03
SCFD1-218ENST00000556256 SLC9A9Q8IVB4 645 aa8.61□□□□□ -1.03
SCFD1-218ENST00000556256 TNS4Q8IZW8 715 aa8.61□□□□□ -1.03
SCFD1-218ENST00000556256 GPC6Q9Y625 555 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-218ENST00000556256 SKIP12755 728 aa8.6□□□□□ -1.03
SCFD1-218ENST00000556256 SH3PXD2AQ5TCZ1 1133 aa8.6□□□□□ -1.03
SCFD1-218ENST00000556256 C20orf204Q6ZNR8 217 aa8.6□□□□□ -1.03
SCFD1-218ENST00000556256 RAB44Q7Z6P3 723 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-218ENST00000556256 SERTM1A2A2V5 107 aa8.59□□□□□ -1.03
SCFD1-218ENST00000556256 LZTS3O60299 673 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-218ENST00000556256 NEUROD1Q13562 356 aa8.58□□□□□ -1.04
SCFD1-218ENST00000556256 NCOA4Q13772 614 aa8.58□□□□□ -1.04
SCFD1-218ENST00000556256 TRAPPC3LQ5T215 181 aa8.58□□□□□ -1.04
SCFD1-218ENST00000556256 KRTAP1-3Q8IUG1 177 aa8.58□□□□□ -1.04
SCFD1-218ENST00000556256 RHPN1Q8TCX5 695 aa8.58□□□□□ -1.04
SCFD1-218ENST00000556256 C9orf172C9J069 976 aa8.57□□□□□ -1.04
SCFD1-218ENST00000556256 CEP63Q96MT8 703 aa8.57□□□□□ -1.04
SCFD1-218ENST00000556256 ALG2Q9H553 416 aa8.57□□□□□ -1.04
SCFD1-218ENST00000556256 SFI1A8K8P3 1242 aa8.56□□□□□ -1.04
SCFD1-218ENST00000556256 SELPP16109 830 aa8.56□□□□□ -1.04
SCFD1-218ENST00000556256 KCNQ4P56696 695 aa8.56□□□□□ -1.04
SCFD1-218ENST00000556256 DEPDC4Q8N2C3 294 aa8.56□□□□□ -1.04
SCFD1-218ENST00000556256 NFATC2IPQ8NCF5 419 aa8.56□□□□□ -1.04
SCFD1-218ENST00000556256 BRD7Q9NPI1 651 aa8.56□□□□□ -1.04
SCFD1-218ENST00000556256 LILRB5O75023 590 aa8.55□□□□□ -1.04
SCFD1-218ENST00000556256 H2AFB1P0C5Y9 115 aa8.55□□□□□ -1.04
SCFD1-218ENST00000556256 H2AFB2P0C5Z0 115 aa8.55□□□□□ -1.04
SCFD1-218ENST00000556256 ADGRE1Q14246 886 aa8.55□□□□□ -1.04
SCFD1-218ENST00000556256 MBTPS1Q14703 1052 aa8.55□□□□□ -1.04
SCFD1-218ENST00000556256 C1orf53Q5VUE5 145 aa8.55□□□□□ -1.04
SCFD1-218ENST00000556256 NBPF11Q86T75 865 aa8.55□□□□□ -1.04
SCFD1-218ENST00000556256 HSH2DQ96JZ2 352 aa8.55□□□□□ -1.04
SCFD1-218ENST00000556256 ANKIB1Q9P2G1 1089 aa8.55□□□□□ -1.04
SCFD1-218ENST00000556256 KCNH4Q9UQ05 1017 aa8.55□□□□□ -1.04
SCFD1-218ENST00000556256 HCN4Q9Y3Q4 1203 aa8.55□□□□□ -1.04
SCFD1-218ENST00000556256 ELNP15502 786 aa8.54□□□□□ -1.04
SCFD1-218ENST00000556256 ZNF280CQ8ND82 737 aa8.54□□□□□ -1.04
SCFD1-218ENST00000556256 A0A0A0MRY4 1105 aa8.53□□□□□ -1.04
SCFD1-218ENST00000556256 ZBTB7BO15156 539 aaPredicted RBP8.53□□□□□ -1.04
SCFD1-218ENST00000556256 BHMTQ93088 406 aa8.53□□□□□ -1.04
SCFD1-218ENST00000556256 LENG1Q96BZ8 264 aaPredicted RBP8.53□□□□□ -1.04
SCFD1-218ENST00000556256 KRTAP4-12Q9BQ66 201 aa8.53□□□□□ -1.04
SCFD1-218ENST00000556256 USP17L5A8MUK1 530 aa8.52□□□□□ -1.05
SCFD1-218ENST00000556256 HIRAP54198 1017 aaPredicted RBP8.52□□□□□ -1.05
SCFD1-218ENST00000556256 PSMA6P60900 246 aaKnown RBP8.52□□□□□ -1.05
SCFD1-218ENST00000556256 TYRO3Q06418 890 aa8.52□□□□□ -1.05
SCFD1-218ENST00000556256 SHISA2Q6UWI4 295 aa8.52□□□□□ -1.05
SCFD1-218ENST00000556256 TXNRD3Q86VQ6 643 aa8.52□□□□□ -1.05
SCFD1-218ENST00000556256 SUSD3Q96L08 255 aa8.52□□□□□ -1.05
SCFD1-218ENST00000556256 PHACTR1Q9C0D0 580 aa8.52□□□□□ -1.05
SCFD1-218ENST00000556256 TSPAN10Q9H1Z9 355 aaPredicted RBP8.52□□□□□ -1.05
SCFD1-218ENST00000556256 MCM6Q14566 821 aa8.51□□□□□ -1.05
SCFD1-218ENST00000556256 POTEAQ6S8J7 498 aa8.51□□□□□ -1.05
SCFD1-218ENST00000556256 TPCN2Q8NHX9 752 aa8.51□□□□□ -1.05
SCFD1-218ENST00000556256 IGFLR1Q9H665 355 aa8.51□□□□□ -1.05
SCFD1-218ENST00000556256 COG6Q9Y2V7 657 aa8.51□□□□□ -1.05
SCFD1-218ENST00000556256 HYAL3O43820 417 aaPredicted RBP8.5□□□□□ -1.05
SCFD1-218ENST00000556256 NRG1Q02297 640 aaPredicted RBP8.5□□□□□ -1.05
SCFD1-218ENST00000556256 TBC1D8BQ0IIM8 1120 aa8.5□□□□□ -1.05
SCFD1-218ENST00000556256 LRP8Q14114 963 aa8.5□□□□□ -1.05
SCFD1-218ENST00000556256 TRIM50Q86XT4 487 aa8.5□□□□□ -1.05
SCFD1-218ENST00000556256 NUDT8Q8WV74 236 aa8.5□□□□□ -1.05
SCFD1-218ENST00000556256 JPH1Q9HDC5 661 aaPredicted RBP8.5□□□□□ -1.05
SCFD1-218ENST00000556256 KIAA1024Q9UPX6 916 aa8.5□□□□□ -1.05
SCFD1-218ENST00000556256 RAC1P63000 192 aa8.49□□□□□ -1.05
SCFD1-218ENST00000556256 LCE3BQ5TA77 95 aa8.49□□□□□ -1.05
SCFD1-218ENST00000556256 CCDC102BQ68D86 513 aa8.49□□□□□ -1.05
SCFD1-218ENST00000556256 UBE2OQ9C0C9 1292 aaKnown RBP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms