RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 ARHGEF11O15085 1522 aa12.41□□□□□ -0.42
ACTN1-216ENST00000556083 RPRD2Q5VT52 1461 aaKnown RBP12.41□□□□□ -0.42
ACTN1-216ENST00000556083 ERMNQ8TAM6 284 aa12.41□□□□□ -0.42
ACTN1-216ENST00000556083 CRACR2AQ9BSW2 395 aa12.41□□□□□ -0.42
ACTN1-216ENST00000556083 NESP48681 1621 aa12.41□□□□□ -0.42
ACTN1-216ENST00000556083 KIF4AO95239 1232 aa12.41□□□□□ -0.42
ACTN1-216ENST00000556083 STK3Q13188 491 aa12.41□□□□□ -0.42
ACTN1-216ENST00000556083 RRS1Q15050 365 aaKnown RBP12.41□□□□□ -0.42
ACTN1-216ENST00000556083 KIF18AQ8NI77 898 aa12.41□□□□□ -0.42
ACTN1-216ENST00000556083 KRT23Q9C075 422 aa12.41□□□□□ -0.42
ACTN1-216ENST00000556083 NPHP3Q7Z494 1330 aa12.41□□□□□ -0.42
ACTN1-216ENST00000556083 STAMBPO95630 424 aa12.4□□□□□ -0.42
ACTN1-216ENST00000556083 TTLL5Q6EMB2 1281 aa12.4□□□□□ -0.42
ACTN1-216ENST00000556083 DDX46Q7L014 1031 aaKnown RBP12.4□□□□□ -0.42
ACTN1-216ENST00000556083 CACNA2D4Q7Z3S7 1137 aa12.4□□□□□ -0.42
ACTN1-216ENST00000556083 ZSCAN30Q86W11 494 aa12.4□□□□□ -0.42
ACTN1-216ENST00000556083 MYO1BO43795 1136 aa12.4□□□□□ -0.42
ACTN1-216ENST00000556083 PODXL2Q9NZ53 605 aa12.4□□□□□ -0.42
ACTN1-216ENST00000556083 CEBPZQ03701 1054 aaKnown RBP12.4□□□□□ -0.42
ACTN1-216ENST00000556083 ENOX2Q16206 610 aaKnown RBP12.4□□□□□ -0.42
ACTN1-216ENST00000556083 MATR3P43243 847 aaKnown RBP eCLIP12.4□□□□□ -0.438e-6■□□□□ 8.9
ACTN1-216ENST00000556083 ALS2CR12Q96Q35 445 aa12.4□□□□□ -0.43
ACTN1-216ENST00000556083 ANKIB1Q9P2G1 1089 aa12.4□□□□□ -0.43
ACTN1-216ENST00000556083 PLCG2P16885 1265 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 PRPHP41219 470 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 ZC3H6P61129 1189 aaKnown RBP12.39□□□□□ -0.43
ACTN1-216ENST00000556083 FLIIQ13045 1269 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 CERS3Q8IU89 383 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 NAP1L4Q99733 375 aaKnown RBP12.39□□□□□ -0.43
ACTN1-216ENST00000556083 MYD88Q99836 296 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 CRNKL1Q9BZJ0 848 aaKnown RBP12.39□□□□□ -0.43
ACTN1-216ENST00000556083 BABAM1Q9NWV8 329 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 MSH6P52701 1360 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 CCDC152Q4G0S7 254 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 TNRQ92752 1358 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 FANCAO15360 1455 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 VSIG10Q8N0Z9 540 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 NCOA7Q8NI08 942 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 FERMT2Q96AC1 680 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 IL1RAPL2Q9NP60 686 aa12.39□□□□□ -0.43
ACTN1-216ENST00000556083 GOLGA8AA7E2F4 631 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 GOLGA8BA8MQT2 603 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 TOP1P11387 765 aaKnown RBP12.38□□□□□ -0.43
ACTN1-216ENST00000556083 SSH1Q8WYL5 1049 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 CALM1P0DP23 149 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 CALM2P0DP24 149 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 CALM3P0DP25 149 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 GNAT2P19087 354 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 AMER1Q5JTC6 1135 aaPredicted RBP12.38□□□□□ -0.43
ACTN1-216ENST00000556083 TMCO3Q6UWJ1 677 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 IFIT3O14879 490 aaKnown RBP12.38□□□□□ -0.43
ACTN1-216ENST00000556083 IARSP41252 1262 aaKnown RBP12.38□□□□□ -0.43
ACTN1-216ENST00000556083 ST5P78524 1137 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 MICALCLQ6ZW33 695 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 CTAGE1Q96RT6 745 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 POLR3GO15318 223 aaPredicted RBP12.38□□□□□ -0.43
ACTN1-216ENST00000556083 PTPN14Q15678 1187 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 PKNOX2Q96KN3 472 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 CDCA7Q9BWT1 371 aaPredicted RBP12.38□□□□□ -0.43
ACTN1-216ENST00000556083 HDAC9Q9UKV0 1011 aa12.38□□□□□ -0.43
ACTN1-216ENST00000556083 ANKRD62A6NC57 917 aa12.37□□□□□ -0.43
ACTN1-216ENST00000556083 SMC1AQ14683 1233 aaKnown RBP12.37□□□□□ -0.43
ACTN1-216ENST00000556083 ANKRD24Q8TF21 1146 aa12.37□□□□□ -0.43
ACTN1-216ENST00000556083 PPP1R2P41236 205 aa12.37□□□□□ -0.43
ACTN1-216ENST00000556083 NLRP5P59047 1200 aa12.37□□□□□ -0.43
ACTN1-216ENST00000556083 KRT28Q7Z3Y7 464 aa12.37□□□□□ -0.43
ACTN1-216ENST00000556083 NYXQ9GZU5 481 aa12.37□□□□□ -0.43
ACTN1-216ENST00000556083 SEPT11Q9NVA2 429 aaKnown RBP12.37□□□□□ -0.43
ACTN1-216ENST00000556083 DUOX2Q9NRD8 1548 aa12.37□□□□□ -0.43
ACTN1-216ENST00000556083 ESPNB1AK53 854 aa12.37□□□□□ -0.43
ACTN1-216ENST00000556083 HDAC1Q13547 482 aaPredicted RBP12.37□□□□□ -0.43
ACTN1-216ENST00000556083 PRPF40BQ6NWY9 871 aaKnown RBP12.37□□□□□ -0.43
ACTN1-216ENST00000556083 CDK13Q14004 1512 aaKnown RBP12.37□□□□□ -0.43
ACTN1-216ENST00000556083 SHTN1A0MZ66 631 aa12.36□□□□□ -0.43
ACTN1-216ENST00000556083 STX1AQ16623 288 aa12.36□□□□□ -0.43
ACTN1-216ENST00000556083 BBXQ8WY36 941 aaPredicted RBP12.36□□□□□ -0.43
ACTN1-216ENST00000556083 TTC12Q9H892 705 aaPredicted RBP12.36□□□□□ -0.43
ACTN1-216ENST00000556083 EXOC6BQ9Y2D4 811 aa12.36□□□□□ -0.43
ACTN1-216ENST00000556083 LRRFIP2Q9Y608 721 aaKnown RBP12.36□□□□□ -0.43
ACTN1-216ENST00000556083 CCDC171Q6TFL3 1326 aa12.36□□□□□ -0.43
ACTN1-216ENST00000556083 UHRF1BP1LA0JNW5 1464 aa12.36□□□□□ -0.43
ACTN1-216ENST00000556083 CCDC96Q2M329 555 aa12.36□□□□□ -0.43
ACTN1-216ENST00000556083 NF2P35240 595 aa12.36□□□□□ -0.43
ACTN1-216ENST00000556083 CNNM3Q8NE01 707 aa12.36□□□□□ -0.43
ACTN1-216ENST00000556083 KAT14Q9H8E8 782 aa12.36□□□□□ -0.43
ACTN1-216ENST00000556083 PPIP5K1Q6PFW1 1433 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 TUBBP07437 444 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 LDHAL6AQ6ZMR3 332 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 MFSD6Q6ZSS7 791 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 MINDY4BA8MYZ0 360 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 UBA7P41226 1012 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 IDI1Q13907 227 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 GIGYF2Q6Y7W6 1299 aaKnown RBP12.35□□□□□ -0.43
ACTN1-216ENST00000556083 TOM1O60784 492 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 IL15P40933 162 aaPredicted RBP12.35□□□□□ -0.43
ACTN1-216ENST00000556083 CCDC102BQ68D86 513 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 ATL3Q6DD88 541 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 PCF11O94913 1555 aaKnown RBP12.35□□□□□ -0.43
ACTN1-216ENST00000556083 PEG3Q9GZU2 1588 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 C11orf95C9JLR9 678 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms