RNA–Protein interactions for RNA: ENST00000555961.1

NEK9-208, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 288 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-208ENST00000555961 PROCP04070 461 aa3.6□□□□□ -1.83
NEK9-208ENST00000555961 BAG6P46379 1132 aa3.6□□□□□ -1.83
NEK9-208ENST00000555961 TEAD4Q15561 434 aa3.6□□□□□ -1.83
NEK9-208ENST00000555961 ZNF468Q5VIY5 522 aaPredicted RBP3.6□□□□□ -1.83
NEK9-208ENST00000555961 C14orf37Q86TY3 774 aa3.6□□□□□ -1.83
NEK9-208ENST00000555961 DEPDC4Q8N2C3 294 aa3.6□□□□□ -1.83
NEK9-208ENST00000555961 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.6□□□□□ -1.83
NEK9-208ENST00000555961 L3MBTL2Q969R5 705 aa3.6□□□□□ -1.83
NEK9-208ENST00000555961 ALG2Q9H553 416 aa3.6□□□□□ -1.83
NEK9-208ENST00000555961 IQSEC3Q9UPP2 1182 aaPredicted RBP3.6□□□□□ -1.83
NEK9-208ENST00000555961 APBA3O96018 575 aa3.59□□□□□ -1.83
NEK9-208ENST00000555961 COL8A1P27658 744 aa3.59□□□□□ -1.83
NEK9-208ENST00000555961 NOS2P35228 1153 aa3.59□□□□□ -1.83
NEK9-208ENST00000555961 DGKGP49619 791 aa3.59□□□□□ -1.83
NEK9-208ENST00000555961 PCBP4P57723 403 aaKnown RBP3.59□□□□□ -1.83
NEK9-208ENST00000555961 PSMA6P60900 246 aaKnown RBP3.59□□□□□ -1.83
NEK9-208ENST00000555961 PRRT3Q5FWE3 981 aa3.59□□□□□ -1.83
NEK9-208ENST00000555961 LINC00114Q6XXX2 140 aa3.59□□□□□ -1.83
NEK9-208ENST00000555961 LRRC69Q6ZNQ3 347 aa3.59□□□□□ -1.83
NEK9-208ENST00000555961 SLC9A9Q8IVB4 645 aa3.59□□□□□ -1.83
NEK9-208ENST00000555961 TPCN2Q8NHX9 752 aa3.59□□□□□ -1.83
NEK9-208ENST00000555961 SUV39H2Q9H5I1 410 aa3.59□□□□□ -1.83
NEK9-208ENST00000555961 ANKIB1Q9P2G1 1089 aa3.59□□□□□ -1.83
NEK9-208ENST00000555961 USP3Q9Y6I4 520 aa3.59□□□□□ -1.83
NEK9-208ENST00000555961 ELOA3CA0A087WX78 387 aaPredicted RBP3.58□□□□□ -1.84
NEK9-208ENST00000555961 ELOA3DA6NLF2 546 aaPredicted RBP3.58□□□□□ -1.84
NEK9-208ENST00000555961 C1QTNF9BB2RNN3 333 aa3.58□□□□□ -1.84
NEK9-208ENST00000555961 SPATA31C1P0DKV0 1188 aa3.58□□□□□ -1.84
NEK9-208ENST00000555961 TXLNAP40222 546 aa3.58□□□□□ -1.84
NEK9-208ENST00000555961 HIF1AQ16665 826 aa3.58□□□□□ -1.84
NEK9-208ENST00000555961 ELOA3BQ3SY89 546 aa3.58□□□□□ -1.84
NEK9-208ENST00000555961 CCDC102BQ68D86 513 aa3.58□□□□□ -1.84
NEK9-208ENST00000555961 SYT9Q86SS6 491 aa3.58□□□□□ -1.84
NEK9-208ENST00000555961 FCHSD1Q86WN1 690 aa3.58□□□□□ -1.84
NEK9-208ENST00000555961 PLEKHM2Q8IWE5 1019 aa3.58□□□□□ -1.84
NEK9-208ENST00000555961 TNS4Q8IZW8 715 aa3.58□□□□□ -1.84
NEK9-208ENST00000555961 ELOA3Q8NG57 546 aa3.58□□□□□ -1.84
NEK9-208ENST00000555961 USP17L3A6NCW0 530 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 USP17L4A6NCW7 530 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 PALM3A6NDB9 673 aaPredicted RBP3.57□□□□□ -1.84
NEK9-208ENST00000555961 EML1O00423 815 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 EFSO43281 561 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 ATP9BO43861 1147 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 SIN3BO75182 1162 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 ITGB2P05107 769 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 FURINP09958 794 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 GATA4P43694 442 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 TBCELQ5QJ74 424 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 C1orf53Q5VUE5 145 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 USP17L2Q6R6M4 530 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 USP17L1Q7RTZ2 530 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 ZNF295-AS1Q8N0V1 137 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 LARGE2Q8N3Y3 721 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 ZDHHC1Q8WTX9 485 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 CEP63Q96MT8 703 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 PLVAPQ9BX97 442 aa3.57□□□□□ -1.84
NEK9-208ENST00000555961 PPP1R12BO60237 982 aaPredicted RBP3.56□□□□□ -1.84
NEK9-208ENST00000555961 HOXB4P17483 251 aaPredicted RBP3.56□□□□□ -1.84
NEK9-208ENST00000555961 SPEM2Q0P670 501 aa3.56□□□□□ -1.84
NEK9-208ENST00000555961 HDGFL1Q5TGJ6 251 aa3.56□□□□□ -1.84
NEK9-208ENST00000555961 CD163Q86VB7 1156 aa3.56□□□□□ -1.84
NEK9-208ENST00000555961 OGFOD1Q8N543 542 aa3.56□□□□□ -1.84
NEK9-208ENST00000555961 POM121Q96HA1 1249 aa3.56□□□□□ -1.84
NEK9-208ENST00000555961 NACC1Q96RE7 527 aa3.56□□□□□ -1.84
NEK9-208ENST00000555961 PHACTR1Q9C0D0 580 aa3.56□□□□□ -1.84
NEK9-208ENST00000555961 BRD7Q9NPI1 651 aa3.56□□□□□ -1.84
NEK9-208ENST00000555961 STRN4Q9NRL3 753 aa3.56□□□□□ -1.84
NEK9-208ENST00000555961 MKRN1Q9UHC7 482 aaKnown RBP3.56□□□□□ -1.84
NEK9-208ENST00000555961 A6NJR5 290 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 SFI1A8K8P3 1242 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 M0R2N6 131 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 ADH7P40394 386 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 CHRNA4P43681 627 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 EPHA4P54764 986 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 TBC1D8BQ0IIM8 1120 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 TRIM28Q13263 835 aaKnown RBP3.55□□□□□ -1.84
NEK9-208ENST00000555961 LARP1Q6PKG0 1096 aaKnown RBP3.55□□□□□ -1.84
NEK9-208ENST00000555961 ZNF594Q96JF6 807 aaPredicted RBP3.55□□□□□ -1.84
NEK9-208ENST00000555961 PNMA5Q96PV4 448 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 ZMYND15Q9H091 742 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 TSPAN10Q9H1Z9 355 aaPredicted RBP3.55□□□□□ -1.84
NEK9-208ENST00000555961 KLF15Q9UIH9 416 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 TIMELESSQ9UNS1 1208 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 KCNH4Q9UQ05 1017 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 HCN4Q9Y3Q4 1203 aa3.55□□□□□ -1.84
NEK9-208ENST00000555961 POM121CA8CG34 1229 aa3.54□□□□□ -1.84
NEK9-208ENST00000555961 ADARB2-AS1A8MUL3 147 aa3.54□□□□□ -1.84
NEK9-208ENST00000555961 M0R082 166 aa3.54□□□□□ -1.84
NEK9-208ENST00000555961 RASA1P20936 1047 aa3.54□□□□□ -1.84
NEK9-208ENST00000555961 HIRAP54198 1017 aaPredicted RBP3.54□□□□□ -1.84
NEK9-208ENST00000555961 CLDN10P78369 228 aa3.54□□□□□ -1.84
NEK9-208ENST00000555961 SFSWAPQ12872 951 aaKnown RBP3.54□□□□□ -1.84
NEK9-208ENST00000555961 DOC2BQ14184 412 aa3.54□□□□□ -1.84
NEK9-208ENST00000555961 GAS2L2Q8NHY3 880 aa3.54□□□□□ -1.84
NEK9-208ENST00000555961 ZNF417Q8TAU3 575 aa3.54□□□□□ -1.84
NEK9-208ENST00000555961 CHMP7Q8WUX9 453 aaPredicted RBP3.54□□□□□ -1.84
NEK9-208ENST00000555961 TNFRSF25Q93038 417 aa3.54□□□□□ -1.84
NEK9-208ENST00000555961 BHMTQ93088 406 aa3.54□□□□□ -1.84
NEK9-208ENST00000555961 TRIM11Q96F44 468 aa3.54□□□□□ -1.84
NEK9-208ENST00000555961 HSH2DQ96JZ2 352 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms