RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 CD2APQ9Y5K6 639 aa18.41■□□□□ 0.54
SHMT2-217ENST00000555116 KIAA1551Q9HCM1 1747 aa18.41■□□□□ 0.54
SHMT2-217ENST00000555116 RGL2O15211 777 aa18.4■□□□□ 0.54
SHMT2-217ENST00000555116 CHPF2Q9P2E5 772 aa18.4■□□□□ 0.54
SHMT2-217ENST00000555116 C10orf71Q711Q0 1435 aa18.4■□□□□ 0.54
SHMT2-217ENST00000555116 CLEC4GQ6UXB4 293 aa18.39■□□□□ 0.54
SHMT2-217ENST00000555116 NLGN2Q8NFZ4 835 aa18.39■□□□□ 0.54
SHMT2-217ENST00000555116 MAP3K15Q6ZN16 1313 aa18.39■□□□□ 0.53
SHMT2-217ENST00000555116 ERVV-1B6SEH8 477 aa18.38■□□□□ 0.53
SHMT2-217ENST00000555116 CACNA1FO60840 1977 aa18.38■□□□□ 0.53
SHMT2-217ENST00000555116 HLFQ16534 295 aa18.38■□□□□ 0.53
SHMT2-217ENST00000555116 BICDL1Q6ZP65 573 aa18.38■□□□□ 0.53
SHMT2-217ENST00000555116 N4BP2Q86UW6 1770 aaPredicted RBP18.38■□□□□ 0.53
SHMT2-217ENST00000555116 DBF4Q9UBU7 674 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-217ENST00000555116 ZNF652Q9Y2D9 606 aa18.37■□□□□ 0.53
SHMT2-217ENST00000555116 SERPINB2P05120 415 aa18.37■□□□□ 0.53
SHMT2-217ENST00000555116 GOLGA2Q08379 1002 aa18.37■□□□□ 0.53
SHMT2-217ENST00000555116 KIF6Q6ZMV9 814 aa18.37■□□□□ 0.53
SHMT2-217ENST00000555116 MYH16Q9H6N6 1097 aa18.37■□□□□ 0.53
SHMT2-217ENST00000555116 TWISTNBQ3B726 338 aaPredicted RBP18.36■□□□□ 0.53
SHMT2-217ENST00000555116 COPS6Q7L5N1 327 aa18.36■□□□□ 0.53
SHMT2-217ENST00000555116 XAGE3Q8WTP9 111 aa18.36■□□□□ 0.53
SHMT2-217ENST00000555116 ANKRD36CQ5JPF3 1778 aa18.36■□□□□ 0.53
SHMT2-217ENST00000555116 EXOSC9Q06265 439 aaKnown RBP18.35■□□□□ 0.53
SHMT2-217ENST00000555116 SETDB2Q96T68 719 aa18.35■□□□□ 0.53
SHMT2-217ENST00000555116 ZBTB3Q9H5J0 574 aa18.35■□□□□ 0.53
SHMT2-217ENST00000555116 ANKRD31Q8N7Z5 1873 aa18.35■□□□□ 0.53
SHMT2-217ENST00000555116 CARMIL3Q8ND23 1372 aa18.35■□□□□ 0.53
SHMT2-217ENST00000555116 HYPKQ9NX55 129 aa18.35■□□□□ 0.53
SHMT2-217ENST00000555116 CCDC30Q5VVM6 783 aa18.34■□□□□ 0.53
SHMT2-217ENST00000555116 PELP1Q8IZL8 1130 aaKnown RBP18.34■□□□□ 0.53
SHMT2-217ENST00000555116 BRCA1P38398 1863 aaKnown RBP18.34■□□□□ 0.53
SHMT2-217ENST00000555116 ATP10DQ9P241 1426 aa18.34■□□□□ 0.53
SHMT2-217ENST00000555116 PXDNLA1KZ92 1463 aa18.33■□□□□ 0.53
SHMT2-217ENST00000555116 AIMP1Q12904 312 aaKnown RBP18.33■□□□□ 0.53
SHMT2-217ENST00000555116 CHMP4AQ9BY43 222 aa18.33■□□□□ 0.53
SHMT2-217ENST00000555116 VAMP4O75379 141 aa18.33■□□□□ 0.52
SHMT2-217ENST00000555116 GIGYF2Q6Y7W6 1299 aaKnown RBP18.33■□□□□ 0.52
SHMT2-217ENST00000555116 NIP7Q9Y221 180 aaKnown RBP eCLIP18.33■□□□□ 0.52
SHMT2-217ENST00000555116 ARFGEF2Q9Y6D5 1785 aa18.32■□□□□ 0.52
SHMT2-217ENST00000555116 SLFN5Q08AF3 891 aa18.32■□□□□ 0.52
SHMT2-217ENST00000555116 E9PSI1 815 aa18.31■□□□□ 0.52
SHMT2-217ENST00000555116 TGFB2P61812 414 aa18.31■□□□□ 0.52
SHMT2-217ENST00000555116 PRR5LQ6MZQ0 368 aa18.31■□□□□ 0.52
SHMT2-217ENST00000555116 PHAXQ9H814 394 aaKnown RBP18.31■□□□□ 0.52
SHMT2-217ENST00000555116 ZNF34Q8IZ26 560 aa18.31■□□□□ 0.52
SHMT2-217ENST00000555116 CDCA7LQ96GN5 454 aa18.31■□□□□ 0.52
SHMT2-217ENST00000555116 DLEC1Q9Y238 1755 aa18.3■□□□□ 0.52
SHMT2-217ENST00000555116 TCERG1O14776 1098 aaKnown RBP18.3■□□□□ 0.52
SHMT2-217ENST00000555116 PLBD2Q8NHP8 589 aa18.3■□□□□ 0.52
SHMT2-217ENST00000555116 DPEP1P16444 411 aa18.29■□□□□ 0.52
SHMT2-217ENST00000555116 TRMT2AQ8IZ69 625 aaKnown RBP18.29■□□□□ 0.52
SHMT2-217ENST00000555116 UBN2Q6ZU65 1347 aa18.29■□□□□ 0.52
SHMT2-217ENST00000555116 A0A0G2JLW4 131 aa18.29■□□□□ 0.52
SHMT2-217ENST00000555116 GPTP24298 496 aa18.29■□□□□ 0.52
SHMT2-217ENST00000555116 ANKRD13DQ6ZTN6 518 aa18.29■□□□□ 0.52
SHMT2-217ENST00000555116 NBPF5PQ86XG9 351 aaPredicted RBP18.29■□□□□ 0.52
SHMT2-217ENST00000555116 CCDC24Q8N4L8 307 aa18.29■□□□□ 0.52
SHMT2-217ENST00000555116 CNBD1Q8NA66 436 aa18.29■□□□□ 0.52
SHMT2-217ENST00000555116 STK31Q9BXU1 1019 aa18.28■□□□□ 0.52
SHMT2-217ENST00000555116 COL11A2P13942 1736 aaPredicted RBP18.27■□□□□ 0.52
SHMT2-217ENST00000555116 KCNA3P22001 575 aa18.27■□□□□ 0.52
SHMT2-217ENST00000555116 IBTKQ9P2D0 1353 aaPredicted RBP18.27■□□□□ 0.51
SHMT2-217ENST00000555116 HNRNPUQ00839 825 aaKnown RBP eCLIP18.26■□□□□ 0.51
SHMT2-217ENST00000555116 TCIRG1Q13488 830 aa18.26■□□□□ 0.51
SHMT2-217ENST00000555116 HSP90AB3PQ58FF7 597 aa18.26■□□□□ 0.51
SHMT2-217ENST00000555116 TPTE2Q6XPS3 522 aa18.26■□□□□ 0.51
SHMT2-217ENST00000555116 FAM177BA6PVY3 158 aa18.26■□□□□ 0.51
SHMT2-217ENST00000555116 SLC4A2P04920 1241 aa18.26■□□□□ 0.51
SHMT2-217ENST00000555116 YBX3P16989 372 aaKnown RBP eCLIP18.26■□□□□ 0.517e-8■□□□□ 9
SHMT2-217ENST00000555116 CHRNA5P30532 468 aa18.26■□□□□ 0.51
SHMT2-217ENST00000555116 SUSD4Q5VX71 490 aa18.26■□□□□ 0.51
SHMT2-217ENST00000555116 G2E3Q7L622 706 aa18.26■□□□□ 0.51
SHMT2-217ENST00000555116 BRIP1Q9BX63 1249 aa18.26■□□□□ 0.51
SHMT2-217ENST00000555116 ARFGEF1Q9Y6D6 1849 aa18.25■□□□□ 0.51
SHMT2-217ENST00000555116 DCAF8L1A6NGE4 600 aa18.25■□□□□ 0.51
SHMT2-217ENST00000555116 ST5P78524 1137 aa18.25■□□□□ 0.51
SHMT2-217ENST00000555116 GPR162Q16538 588 aa18.25■□□□□ 0.51
SHMT2-217ENST00000555116 PARP10Q53GL7 1025 aa18.25■□□□□ 0.51
SHMT2-217ENST00000555116 NPHP1O15259 732 aa18.24■□□□□ 0.51
SHMT2-217ENST00000555116 NTSR2O95665 410 aa18.24■□□□□ 0.51
SHMT2-217ENST00000555116 NLRP10Q86W26 655 aa18.24■□□□□ 0.51
SHMT2-217ENST00000555116 ISCA1Q9BUE6 129 aa18.24■□□□□ 0.51
SHMT2-217ENST00000555116 NYXQ9GZU5 481 aa18.24■□□□□ 0.51
SHMT2-217ENST00000555116 WWC3Q9ULE0 1092 aa18.24■□□□□ 0.51
SHMT2-217ENST00000555116 CHD4Q14839 1912 aa18.24■□□□□ 0.51
SHMT2-217ENST00000555116 TNRC6CQ9HCJ0 1690 aaKnown RBP18.24■□□□□ 0.51
SHMT2-217ENST00000555116 RIC3Q7Z5B4 369 aa18.23■□□□□ 0.51
SHMT2-217ENST00000555116 C2CD5Q86YS7 1000 aa18.23■□□□□ 0.51
SHMT2-217ENST00000555116 ABCC12Q96J65 1359 aa18.23■□□□□ 0.51
SHMT2-217ENST00000555116 PDE6BP35913 854 aa18.22■□□□□ 0.51
SHMT2-217ENST00000555116 NUTM1Q86Y26 1132 aa18.22■□□□□ 0.51
SHMT2-217ENST00000555116 DDX58O95786 925 aaKnown RBP18.22■□□□□ 0.51
SHMT2-217ENST00000555116 ERFEQ4G0M1 354 aa18.22■□□□□ 0.51
SHMT2-217ENST00000555116 PPP1R42Q7Z4L9 355 aa18.22■□□□□ 0.51
SHMT2-217ENST00000555116 PIM2Q9P1W9 311 aa18.22■□□□□ 0.51
SHMT2-217ENST00000555116 PDZRN3Q9UPQ7 1066 aa18.22■□□□□ 0.51
SHMT2-217ENST00000555116 ADCY9O60503 1353 aa18.22■□□□□ 0.51
SHMT2-217ENST00000555116 CACNA1SQ13698 1873 aa18.21■□□□□ 0.51
SHMT2-217ENST00000555116 ATP5J2-PTCD1G3V325 749 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms