RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 TAOK3Q9H2K8 898 aa14.61□□□□□ -0.07
SHMT2-216ENST00000554975 TAF1DQ9H5J8 278 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-216ENST00000554975 SLC52A2Q9HAB3 445 aa14.61□□□□□ -0.07
SHMT2-216ENST00000554975 NUDCQ9Y266 331 aa14.61□□□□□ -0.07
SHMT2-216ENST00000554975 THSD7BQ9C0I4 1608 aa14.61□□□□□ -0.07
SHMT2-216ENST00000554975 BCORQ6W2J9 1755 aa14.6□□□□□ -0.07
SHMT2-216ENST00000554975 CANXP27824 592 aaKnown RBP14.6□□□□□ -0.07
SHMT2-216ENST00000554975 SULT6B1Q6IMI4 303 aa14.6□□□□□ -0.07
SHMT2-216ENST00000554975 PDE4DIPQ5VU43 2346 aa14.59□□□□□ -0.07
SHMT2-216ENST00000554975 MORC1Q86VD1 984 aa14.59□□□□□ -0.07
SHMT2-216ENST00000554975 L3MBTL3Q96JM7 780 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-216ENST00000554975 TRPM7Q96QT4 1865 aa14.59□□□□□ -0.07
SHMT2-216ENST00000554975 CASP8AP2Q9UKL3 1982 aa14.58□□□□□ -0.07
SHMT2-216ENST00000554975 TNRC18O15417 2968 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-216ENST00000554975 BRIP1Q9BX63 1249 aa14.58□□□□□ -0.08
SHMT2-216ENST00000554975 ZNF541Q9H0D2 1346 aa14.58□□□□□ -0.08
SHMT2-216ENST00000554975 RASSF10A6NK89 507 aa14.57□□□□□ -0.08
SHMT2-216ENST00000554975 RNMTO43148 476 aaKnown RBP14.57□□□□□ -0.08
SHMT2-216ENST00000554975 PDE6BP35913 854 aa14.57□□□□□ -0.08
SHMT2-216ENST00000554975 EIF5P55010 431 aaKnown RBP14.57□□□□□ -0.08
SHMT2-216ENST00000554975 EAPPQ56P03 285 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-216ENST00000554975 AKAP4Q5JQC9 854 aa14.57□□□□□ -0.08
SHMT2-216ENST00000554975 PRPF40BQ6NWY9 871 aaKnown RBP14.57□□□□□ -0.08
SHMT2-216ENST00000554975 SIPA1L3O60292 1781 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-216ENST00000554975 LTBP1Q14766 1721 aa14.56□□□□□ -0.08
SHMT2-216ENST00000554975 IQCA1LA6NCM1 817 aa14.56□□□□□ -0.08
SHMT2-216ENST00000554975 PER1O15534 1290 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-216ENST00000554975 CNGB1Q14028 1251 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-216ENST00000554975 PPP4R2Q9NY27 417 aa14.56□□□□□ -0.08
SHMT2-216ENST00000554975 CCDC85CA6NKD9 419 aa14.55□□□□□ -0.08
SHMT2-216ENST00000554975 SRGNP10124 158 aa14.55□□□□□ -0.08
SHMT2-216ENST00000554975 IL13P35225 146 aa14.55□□□□□ -0.08
SHMT2-216ENST00000554975 RGS19P49795 217 aa14.55□□□□□ -0.08
SHMT2-216ENST00000554975 MLLT1Q03111 559 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-216ENST00000554975 FMR1Q06787 632 aaKnown RBP eCLIP14.55□□□□□ -0.08
SHMT2-216ENST00000554975 DEFB115Q30KQ5 88 aa14.55□□□□□ -0.08
SHMT2-216ENST00000554975 MAP1SQ66K74 1059 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-216ENST00000554975 WDR33Q9C0J8 1336 aaKnown RBP14.55□□□□□ -0.08
SHMT2-216ENST00000554975 STYK1Q6J9G0 422 aa14.54□□□□□ -0.08
SHMT2-216ENST00000554975 OLFM4Q6UX06 510 aa14.54□□□□□ -0.08
SHMT2-216ENST00000554975 C7orf43Q8WVR3 580 aa14.54□□□□□ -0.08
SHMT2-216ENST00000554975 PCDH10Q9P2E7 1040 aa14.54□□□□□ -0.08
SHMT2-216ENST00000554975 TBC1D2BQ9UPU7 963 aa14.54□□□□□ -0.08
SHMT2-216ENST00000554975 CLEC11AQ9Y240 323 aa14.54□□□□□ -0.08
SHMT2-216ENST00000554975 RNF123Q5XPI4 1314 aa14.53□□□□□ -0.08
SHMT2-216ENST00000554975 EPHX2P34913 555 aa14.53□□□□□ -0.08
SHMT2-216ENST00000554975 VSIG10Q8N0Z9 540 aa14.53□□□□□ -0.08
SHMT2-216ENST00000554975 CNTROBQ8N137 903 aa14.53□□□□□ -0.08
SHMT2-216ENST00000554975 CNKSR1Q969H4 720 aa14.53□□□□□ -0.08
SHMT2-216ENST00000554975 ZNF277Q9NRM2 450 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-216ENST00000554975 HACL1Q9UJ83 578 aa14.53□□□□□ -0.08
SHMT2-216ENST00000554975 PDZRN3Q9UPQ7 1066 aa14.53□□□□□ -0.08
SHMT2-216ENST00000554975 COL4A5P29400 1685 aa14.52□□□□□ -0.08
SHMT2-216ENST00000554975 MAP2K1Q02750 393 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-216ENST00000554975 CC2D1BQ5T0F9 858 aaKnown RBP14.52□□□□□ -0.09
SHMT2-216ENST00000554975 TSKSQ9UJT2 592 aa14.52□□□□□ -0.09
SHMT2-216ENST00000554975 ZNF330Q9Y3S2 320 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-216ENST00000554975 A0A087WZG4 1122 aa14.51□□□□□ -0.09
SHMT2-216ENST00000554975 CAMTA2O94983 1202 aa14.51□□□□□ -0.09
SHMT2-216ENST00000554975 AMER1Q5JTC6 1135 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-216ENST00000554975 CNBD1Q8NA66 436 aa14.51□□□□□ -0.09
SHMT2-216ENST00000554975 MASTLQ96GX5 879 aa14.51□□□□□ -0.09
SHMT2-216ENST00000554975 ABT1Q9ULW3 272 aaKnown RBP14.51□□□□□ -0.09
SHMT2-216ENST00000554975 HMOX1P09601 288 aa14.5□□□□□ -0.09
SHMT2-216ENST00000554975 MTHFSDQ2M296 383 aaKnown RBP14.5□□□□□ -0.09
SHMT2-216ENST00000554975 TSHZ2Q9NRE2 1034 aa14.5□□□□□ -0.09
SHMT2-216ENST00000554975 STARD3NLO95772 234 aa14.49□□□□□ -0.09
SHMT2-216ENST00000554975 FKBP4Q02790 459 aaKnown RBP eCLIP14.49□□□□□ -0.09
SHMT2-216ENST00000554975 CCDC93Q567U6 631 aa14.49□□□□□ -0.09
SHMT2-216ENST00000554975 SOGA3Q5TF21 947 aa14.49□□□□□ -0.09
SHMT2-216ENST00000554975 CYP4F22Q6NT55 531 aa14.49□□□□□ -0.09
SHMT2-216ENST00000554975 ZNF496Q96IT1 587 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-216ENST00000554975 HEG1Q9ULI3 1381 aa14.48□□□□□ -0.09
SHMT2-216ENST00000554975 A1BGP04217 495 aa14.48□□□□□ -0.09
SHMT2-216ENST00000554975 ST5P78524 1137 aa14.48□□□□□ -0.09
SHMT2-216ENST00000554975 CAPNS2Q96L46 248 aa14.48□□□□□ -0.09
SHMT2-216ENST00000554975 SETDB2Q96T68 719 aa14.48□□□□□ -0.09
SHMT2-216ENST00000554975 DDX21Q9NR30 783 aaKnown RBP eCLIP14.48□□□□□ -0.09
SHMT2-216ENST00000554975 SNED1Q8TER0 1413 aa14.48□□□□□ -0.09
SHMT2-216ENST00000554975 FZD9O00144 591 aa14.47□□□□□ -0.09
SHMT2-216ENST00000554975 GRM1Q13255 1194 aa14.47□□□□□ -0.09
SHMT2-216ENST00000554975 NPHP1O15259 732 aa14.46□□□□□ -0.09
SHMT2-216ENST00000554975 AOC2O75106 756 aa14.46□□□□□ -0.09
SHMT2-216ENST00000554975 IL6STP40189 918 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-216ENST00000554975 PIP4K2AP48426 406 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-216ENST00000554975 PAXIP1Q6ZW49 1069 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-216ENST00000554975 PNMA8AQ86V59 439 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-216ENST00000554975 NGEFQ8N5V2 710 aa14.46□□□□□ -0.09
SHMT2-216ENST00000554975 TRAF5O00463 557 aa14.45□□□□□ -0.1
SHMT2-216ENST00000554975 IARSP41252 1262 aaKnown RBP14.45□□□□□ -0.1
SHMT2-216ENST00000554975 WDR43Q15061 677 aaKnown RBP eCLIP14.45□□□□□ -0.1
SHMT2-216ENST00000554975 CST9Q5W186 159 aa14.45□□□□□ -0.1
SHMT2-216ENST00000554975 SLC51AQ86UW1 340 aa14.45□□□□□ -0.1
SHMT2-216ENST00000554975 TTC5Q8N0Z6 440 aa14.45□□□□□ -0.1
SHMT2-216ENST00000554975 GPR101Q96P66 508 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-216ENST00000554975 MCOLN1Q9GZU1 580 aa14.45□□□□□ -0.1
SHMT2-216ENST00000554975 NPR1P16066 1061 aa14.44□□□□□ -0.1
SHMT2-216ENST00000554975 ZNF790Q6PG37 636 aa14.44□□□□□ -0.1
SHMT2-216ENST00000554975 DZIP3Q86Y13 1208 aaKnown RBP14.44□□□□□ -0.1
SHMT2-216ENST00000554975 GPC2Q8N158 579 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms