RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 LY75O60449 1722 aa10.94□□□□□ -0.66
PSEN1-209ENST00000553855 STARD3NLO95772 234 aa10.93□□□□□ -0.66
PSEN1-209ENST00000553855 SSFA2P28290 1259 aa10.93□□□□□ -0.66
PSEN1-209ENST00000553855 RIPK4P57078 832 aa10.93□□□□□ -0.66
PSEN1-209ENST00000553855 RC3H1Q5TC82 1133 aaKnown RBP10.93□□□□□ -0.66
PSEN1-209ENST00000553855 ZNF790Q6PG37 636 aa10.93□□□□□ -0.66
PSEN1-209ENST00000553855 LINC00116Q8NCU8 138 aa10.93□□□□□ -0.66
PSEN1-209ENST00000553855 FMNL2Q96PY5 1086 aa10.93□□□□□ -0.66
PSEN1-209ENST00000553855 ADAMTS8Q9UP79 889 aa10.93□□□□□ -0.66
PSEN1-209ENST00000553855 PNPLA7Q6ZV29 1317 aa10.92□□□□□ -0.66
PSEN1-209ENST00000553855 ITPK1Q13572 414 aa10.92□□□□□ -0.66
PSEN1-209ENST00000553855 DCTN1Q14203 1278 aa10.92□□□□□ -0.66
PSEN1-209ENST00000553855 TAF7Q15545 349 aaPredicted RBP10.92□□□□□ -0.66
PSEN1-209ENST00000553855 TRAPPC3LQ5T215 181 aa10.92□□□□□ -0.66
PSEN1-209ENST00000553855 CCDC146Q8IYE0 955 aa10.92□□□□□ -0.66
PSEN1-209ENST00000553855 MRC1P22897 1456 aa10.92□□□□□ -0.66
PSEN1-209ENST00000553855 CEMIPQ8WUJ3 1361 aa10.91□□□□□ -0.66
PSEN1-209ENST00000553855 CNTNAP4Q9C0A0 1308 aa10.91□□□□□ -0.66
PSEN1-209ENST00000553855 SCN11AQ9UI33 1791 aa10.91□□□□□ -0.66
PSEN1-209ENST00000553855 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.91□□□□□ -0.66
PSEN1-209ENST00000553855 POTEFA5A3E0 1075 aa10.91□□□□□ -0.66
PSEN1-209ENST00000553855 RFC4P35249 363 aa10.91□□□□□ -0.66
PSEN1-209ENST00000553855 PPP1R15BQ5SWA1 713 aa10.91□□□□□ -0.66
PSEN1-209ENST00000553855 COL23A1Q86Y22 540 aaPredicted RBP10.91□□□□□ -0.66
PSEN1-209ENST00000553855 PAPPAQ13219 1627 aa10.91□□□□□ -0.66
PSEN1-209ENST00000553855 C5P01031 1676 aa10.9□□□□□ -0.66
PSEN1-209ENST00000553855 RPS6KA4O75676 772 aa10.9□□□□□ -0.66
PSEN1-209ENST00000553855 TMPOP42166 694 aaKnown RBP10.9□□□□□ -0.66
PSEN1-209ENST00000553855 CRKLP46109 303 aaKnown RBP10.9□□□□□ -0.66
PSEN1-209ENST00000553855 DNAJC10Q8IXB1 793 aa10.9□□□□□ -0.66
PSEN1-209ENST00000553855 GPHNQ9NQX3 736 aaPredicted RBP10.9□□□□□ -0.66
PSEN1-209ENST00000553855 CALD1Q05682 793 aaKnown RBP10.89□□□□□ -0.67
PSEN1-209ENST00000553855 SLC4A9Q96Q91 983 aa10.89□□□□□ -0.67
PSEN1-209ENST00000553855 ARXQ96QS3 562 aa10.89□□□□□ -0.67
PSEN1-209ENST00000553855 PDGFDQ9GZP0 370 aaPredicted RBP10.89□□□□□ -0.67
PSEN1-209ENST00000553855 CCDC87Q9NVE4 849 aa10.89□□□□□ -0.67
PSEN1-209ENST00000553855 RRP7AQ9Y3A4 280 aaKnown RBP10.89□□□□□ -0.67
PSEN1-209ENST00000553855 C4BP0C0L5 1744 aa10.89□□□□□ -0.67
PSEN1-209ENST00000553855 HEG1Q9ULI3 1381 aa10.89□□□□□ -0.67
PSEN1-209ENST00000553855 LRP5O75197 1615 aa10.88□□□□□ -0.67
PSEN1-209ENST00000553855 A0A087WZG4 1122 aa10.88□□□□□ -0.67
PSEN1-209ENST00000553855 G3V3G9 751 aa10.88□□□□□ -0.67
PSEN1-209ENST00000553855 ZPR1O75312 459 aa10.88□□□□□ -0.67
PSEN1-209ENST00000553855 SNRPA1P09661 255 aaKnown RBP10.88□□□□□ -0.67
PSEN1-209ENST00000553855 ZNF496Q96IT1 587 aaPredicted RBP10.88□□□□□ -0.67
PSEN1-209ENST00000553855 TSPYL4Q9UJ04 414 aa10.88□□□□□ -0.67
PSEN1-209ENST00000553855 POTEB2H3BUK9 544 aa10.87□□□□□ -0.67
PSEN1-209ENST00000553855 CYP19A1P11511 503 aaPredicted RBP10.87□□□□□ -0.67
PSEN1-209ENST00000553855 CANXP27824 592 aaKnown RBP10.87□□□□□ -0.67
PSEN1-209ENST00000553855 MSL1Q68DK7 614 aa10.87□□□□□ -0.67
PSEN1-209ENST00000553855 NLGN1Q8N2Q7 840 aa10.87□□□□□ -0.67
PSEN1-209ENST00000553855 BABAM1Q9NWV8 329 aa10.87□□□□□ -0.67
PSEN1-209ENST00000553855 ZNF330Q9Y3S2 320 aaPredicted RBP10.87□□□□□ -0.67
PSEN1-209ENST00000553855 LAS1LQ9Y4W2 734 aaKnown RBP10.87□□□□□ -0.67
PSEN1-209ENST00000553855 ADAMTS7Q9UKP4 1686 aa10.87□□□□□ -0.67
PSEN1-209ENST00000553855 ZNF831Q5JPB2 1677 aa10.86□□□□□ -0.67
PSEN1-209ENST00000553855 APAF1O14727 1248 aa10.86□□□□□ -0.67
PSEN1-209ENST00000553855 MLLT3P42568 568 aaPredicted RBP10.86□□□□□ -0.67
PSEN1-209ENST00000553855 MAMSTRQ6ZN01 415 aa10.86□□□□□ -0.67
PSEN1-209ENST00000553855 GPIHBP1Q8IV16 184 aa10.86□□□□□ -0.67
PSEN1-209ENST00000553855 L3MBTL3Q96JM7 780 aaPredicted RBP10.86□□□□□ -0.67
PSEN1-209ENST00000553855 THUMPD2Q9BTF0 503 aaKnown RBP10.86□□□□□ -0.67
PSEN1-209ENST00000553855 MIS18AQ9NYP9 233 aa10.86□□□□□ -0.67
PSEN1-209ENST00000553855 CASZ1Q86V15 1759 aa10.85□□□□□ -0.67
PSEN1-209ENST00000553855 QSER1Q2KHR3 1735 aa10.85□□□□□ -0.67
PSEN1-209ENST00000553855 KCNQ3O43525 872 aa10.85□□□□□ -0.67
PSEN1-209ENST00000553855 PTGER2P43116 358 aa10.85□□□□□ -0.67
PSEN1-209ENST00000553855 RBM26Q5T8P6 1007 aaKnown RBP10.85□□□□□ -0.67
PSEN1-209ENST00000553855 FAM9BQ8IZU0 186 aa10.85□□□□□ -0.67
PSEN1-209ENST00000553855 PDCD7Q8N8D1 485 aaKnown RBP10.85□□□□□ -0.67
PSEN1-209ENST00000553855 KCPQ6ZWJ8 1503 aa10.84□□□□□ -0.67
PSEN1-209ENST00000553855 TAF1LQ8IZX4 1826 aa10.84□□□□□ -0.67
PSEN1-209ENST00000553855 INTS5Q6P9B9 1019 aaKnown RBP10.84□□□□□ -0.67
PSEN1-209ENST00000553855 SCUBE2Q9NQ36 999 aa10.84□□□□□ -0.67
PSEN1-209ENST00000553855 ZBTB1Q9Y2K1 713 aa10.84□□□□□ -0.67
PSEN1-209ENST00000553855 PARP3Q9Y6F1 533 aa10.84□□□□□ -0.67
PSEN1-209ENST00000553855 COL15A1P39059 1388 aa10.83□□□□□ -0.68
PSEN1-209ENST00000553855 IL6STP40189 918 aaPredicted RBP10.83□□□□□ -0.68
PSEN1-209ENST00000553855 GNAI1P63096 354 aa10.83□□□□□ -0.68
PSEN1-209ENST00000553855 CCDC184Q52MB2 194 aa10.83□□□□□ -0.68
PSEN1-209ENST00000553855 SMIM5Q71RC9 77 aa10.83□□□□□ -0.68
PSEN1-209ENST00000553855 CHMP4AQ9BY43 222 aa10.83□□□□□ -0.68
PSEN1-209ENST00000553855 FHDC1Q9C0D6 1143 aaPredicted RBP10.83□□□□□ -0.68
PSEN1-209ENST00000553855 SOS1Q07889 1333 aaPredicted RBP10.83□□□□□ -0.68
PSEN1-209ENST00000553855 SPDYE16A6NNV3 312 aaPredicted RBP10.82□□□□□ -0.68
PSEN1-209ENST00000553855 A1BGP04217 495 aa10.82□□□□□ -0.68
PSEN1-209ENST00000553855 MMP10P09238 476 aa10.82□□□□□ -0.68
PSEN1-209ENST00000553855 EIF4A1P60842 406 aaKnown RBP10.82□□□□□ -0.68
PSEN1-209ENST00000553855 DPY19L2Q6NUT2 758 aa10.82□□□□□ -0.68
PSEN1-209ENST00000553855 USP16Q9Y5T5 823 aa10.82□□□□□ -0.68
PSEN1-209ENST00000553855 USP42Q9H9J4 1324 aaKnown RBP10.82□□□□□ -0.68
PSEN1-209ENST00000553855 VIRMAQ69YN4 1812 aaKnown RBP10.81□□□□□ -0.68
PSEN1-209ENST00000553855 DPYSL4O14531 572 aa10.81□□□□□ -0.68
PSEN1-209ENST00000553855 NPHP1O15259 732 aa10.81□□□□□ -0.68
PSEN1-209ENST00000553855 GYS1P13807 737 aa10.81□□□□□ -0.68
PSEN1-209ENST00000553855 USPL1Q5W0Q7 1092 aa10.81□□□□□ -0.68
PSEN1-209ENST00000553855 DIEXFQ68CQ4 756 aaKnown RBP10.81□□□□□ -0.68
PSEN1-209ENST00000553855 AMIGO3Q86WK7 504 aa10.81□□□□□ -0.68
PSEN1-209ENST00000553855 SYT17Q9BSW7 474 aa10.81□□□□□ -0.68
PSEN1-209ENST00000553855 EMILIN3Q9NT22 766 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms