RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 SRGAP3O43295 1099 aa14.8□□□□□ -0.04
SHMT2-207ENST00000553837 CYP2E1P05181 493 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-207ENST00000553837 ZGPATQ8N5A5 531 aaKnown RBP14.8□□□□□ -0.04
SHMT2-207ENST00000553837 SIPA1L3O60292 1781 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-207ENST00000553837 LRSAM1Q6UWE0 723 aa14.8□□□□□ -0.04
SHMT2-207ENST00000553837 RHPN1Q8TCX5 695 aa14.8□□□□□ -0.04
SHMT2-207ENST00000553837 MAP4K4O95819 1239 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-207ENST00000553837 ERBB3P21860 1342 aa14.78□□□□□ -0.04
SHMT2-207ENST00000553837 PI4K2BQ8TCG2 481 aa14.78□□□□□ -0.04
SHMT2-207ENST00000553837 DBF4Q9UBU7 674 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-207ENST00000553837 MAP3K2Q9Y2U5 619 aa14.78□□□□□ -0.04
SHMT2-207ENST00000553837 ALS2Q96Q42 1657 aa14.78□□□□□ -0.04
SHMT2-207ENST00000553837 OVOS2A0A0G2JMS6 1433 aa14.78□□□□□ -0.04
SHMT2-207ENST00000553837 PRPF40AO75400 957 aaKnown RBP14.78□□□□□ -0.04
SHMT2-207ENST00000553837 ARID3AQ99856 593 aa14.78□□□□□ -0.04
SHMT2-207ENST00000553837 C19orf44Q9H6X5 657 aa14.78□□□□□ -0.04
SHMT2-207ENST00000553837 ADAMTS7Q9UKP4 1686 aa14.77□□□□□ -0.04
SHMT2-207ENST00000553837 RAB11FIP3O75154 756 aa14.77□□□□□ -0.04
SHMT2-207ENST00000553837 KIAA2012Q0VF49 1180 aa14.77□□□□□ -0.04
SHMT2-207ENST00000553837 TAF3Q5VWG9 929 aa14.77□□□□□ -0.04
SHMT2-207ENST00000553837 MYRIPQ8NFW9 859 aa14.77□□□□□ -0.04
SHMT2-207ENST00000553837 PRDM10Q9NQV6 1147 aa14.77□□□□□ -0.04
SHMT2-207ENST00000553837 ZHX1Q9UKY1 873 aaPredicted RBP14.77□□□□□ -0.04
SHMT2-207ENST00000553837 ST18O60284 1047 aa14.77□□□□□ -0.05
SHMT2-207ENST00000553837 CWF19L2Q2TBE0 894 aaKnown RBP14.77□□□□□ -0.05
SHMT2-207ENST00000553837 GTPBP4Q9BZE4 634 aaKnown RBP14.77□□□□□ -0.05
SHMT2-207ENST00000553837 MST1RQ04912 1400 aa14.76□□□□□ -0.05
SHMT2-207ENST00000553837 AOX1Q06278 1338 aa14.76□□□□□ -0.05
SHMT2-207ENST00000553837 KIF1AQ12756 1690 aa14.76□□□□□ -0.05
SHMT2-207ENST00000553837 ZSCAN20P17040 1043 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-207ENST00000553837 SLC39A6Q13433 755 aa14.76□□□□□ -0.05
SHMT2-207ENST00000553837 GPT2Q8TD30 523 aa14.76□□□□□ -0.05
SHMT2-207ENST00000553837 PRIMPOLQ96LW4 560 aa14.76□□□□□ -0.05
SHMT2-207ENST00000553837 ANO2Q9NQ90 1003 aa14.76□□□□□ -0.05
SHMT2-207ENST00000553837 NEK4P51957 841 aa14.75□□□□□ -0.05
SHMT2-207ENST00000553837 HMGN5P82970 282 aaKnown RBP14.75□□□□□ -0.05
SHMT2-207ENST00000553837 PDIA6Q15084 440 aa14.75□□□□□ -0.05
SHMT2-207ENST00000553837 ZDHHC9Q9Y397 364 aa14.75□□□□□ -0.05
SHMT2-207ENST00000553837 STRCP1A6NGW2 1772 aa14.75□□□□□ -0.05
SHMT2-207ENST00000553837 KDM6AO15550 1401 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-207ENST00000553837 KSR2Q6VAB6 950 aa14.75□□□□□ -0.05
SHMT2-207ENST00000553837 PTMAP06454 111 aaKnown RBP14.74□□□□□ -0.05
SHMT2-207ENST00000553837 PPP4R3BQ5MIZ7 849 aa14.74□□□□□ -0.05
SHMT2-207ENST00000553837 CABLES1Q8TDN4 633 aa14.74□□□□□ -0.05
SHMT2-207ENST00000553837 KIF1BPQ96EK5 621 aa14.74□□□□□ -0.05
SHMT2-207ENST00000553837 RBM27Q9P2N5 1060 aaKnown RBP14.74□□□□□ -0.05
SHMT2-207ENST00000553837 KAZALD1Q96I82 304 aa14.74□□□□□ -0.05
SHMT2-207ENST00000553837 CHAMP1Q96JM3 812 aa14.74□□□□□ -0.05
SHMT2-207ENST00000553837 PA2G4Q9UQ80 394 aaKnown RBP14.74□□□□□ -0.05
SHMT2-207ENST00000553837 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-207ENST00000553837 SYCE3A1L190 88 aa14.73□□□□□ -0.05
SHMT2-207ENST00000553837 LETM1O95202 739 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-207ENST00000553837 MBD3O95983 291 aa14.73□□□□□ -0.05
SHMT2-207ENST00000553837 MTX1Q13505 466 aa14.73□□□□□ -0.05
SHMT2-207ENST00000553837 DNTTIP2Q5QJE6 756 aaKnown RBP14.73□□□□□ -0.05
SHMT2-207ENST00000553837 TMX3Q96JJ7 454 aa14.73□□□□□ -0.05
SHMT2-207ENST00000553837 NLRP2Q9NX02 1062 aa14.73□□□□□ -0.05
SHMT2-207ENST00000553837 TMEM94Q12767 1356 aa14.73□□□□□ -0.05
SHMT2-207ENST00000553837 C5P01031 1676 aa14.73□□□□□ -0.05
SHMT2-207ENST00000553837 MEGF6O75095 1541 aa14.73□□□□□ -0.05
SHMT2-207ENST00000553837 ALDH1L1O75891 902 aa14.73□□□□□ -0.05
SHMT2-207ENST00000553837 CHMP4AQ9BY43 222 aa14.73□□□□□ -0.05
SHMT2-207ENST00000553837 TMEM63CQ9P1W3 806 aa14.73□□□□□ -0.05
SHMT2-207ENST00000553837 COL18A1P39060 1754 aa14.73□□□□□ -0.05
SHMT2-207ENST00000553837 AIMP1Q12904 312 aaKnown RBP14.72□□□□□ -0.05
SHMT2-207ENST00000553837 IL17RAQ96F46 866 aa14.72□□□□□ -0.05
SHMT2-207ENST00000553837 C9orf78Q9NZ63 289 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-207ENST00000553837 NPHP3Q7Z494 1330 aa14.72□□□□□ -0.05
SHMT2-207ENST00000553837 CRYBG1Q9Y4K1 1723 aa14.71□□□□□ -0.05
SHMT2-207ENST00000553837 GTF2F1P35269 517 aaKnown RBP eCLIP14.71□□□□□ -0.05
SHMT2-207ENST00000553837 ZNF790Q6PG37 636 aa14.71□□□□□ -0.05
SHMT2-207ENST00000553837 NFATC2IPQ8NCF5 419 aa14.71□□□□□ -0.05
SHMT2-207ENST00000553837 SUCLG2Q96I99 432 aa14.71□□□□□ -0.05
SHMT2-207ENST00000553837 HYPKQ9NX55 129 aa14.71□□□□□ -0.05
SHMT2-207ENST00000553837 SCN11AQ9UI33 1791 aa14.71□□□□□ -0.05
SHMT2-207ENST00000553837 IGKV5-2P06315 115 aa14.71□□□□□ -0.05
SHMT2-207ENST00000553837 PHKG2P15735 406 aa14.71□□□□□ -0.05
SHMT2-207ENST00000553837 CHRNA2Q15822 529 aa14.71□□□□□ -0.05
SHMT2-207ENST00000553837 NOL8Q76FK4 1167 aaKnown RBP14.71□□□□□ -0.05
SHMT2-207ENST00000553837 UPF3BQ9BZI7 483 aaKnown RBP14.71□□□□□ -0.05
SHMT2-207ENST00000553837 SLC52A2Q9HAB3 445 aa14.71□□□□□ -0.05
SHMT2-207ENST00000553837 DDX21Q9NR30 783 aaKnown RBP eCLIP14.71□□□□□ -0.05
SHMT2-207ENST00000553837 TMEM51Q9NW97 253 aa14.71□□□□□ -0.05
SHMT2-207ENST00000553837 USP42Q9H9J4 1324 aaKnown RBP14.71□□□□□ -0.06
SHMT2-207ENST00000553837 ATF3P18847 181 aa14.7□□□□□ -0.06
SHMT2-207ENST00000553837 ANAPC15P60006 121 aa14.7□□□□□ -0.06
SHMT2-207ENST00000553837 RAPGEF4Q8WZA2 1011 aa14.7□□□□□ -0.06
SHMT2-207ENST00000553837 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.7□□□□□ -0.063e-7■■□□□ 13.1
SHMT2-207ENST00000553837 SGSM2O43147 1006 aa14.7□□□□□ -0.06
SHMT2-207ENST00000553837 HSPA4P34932 840 aa14.7□□□□□ -0.06
SHMT2-207ENST00000553837 TSPY26PQ9H489 355 aa14.7□□□□□ -0.06
SHMT2-207ENST00000553837 MCCP23508 829 aa14.69□□□□□ -0.06
SHMT2-207ENST00000553837 OS9Q13438 667 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-207ENST00000553837 CUL4AQ13619 759 aa14.69□□□□□ -0.06
SHMT2-207ENST00000553837 LINS1Q8NG48 757 aa14.69□□□□□ -0.06
SHMT2-207ENST00000553837 SYAP1Q96A49 352 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-207ENST00000553837 LSG1Q9H089 658 aaKnown RBP14.69□□□□□ -0.06
SHMT2-207ENST00000553837 UTYO14607 1347 aa14.69□□□□□ -0.06
SHMT2-207ENST00000553837 GRM8O00222 908 aa14.68□□□□□ -0.06
SHMT2-207ENST00000553837 MYL6BP14649 208 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms