RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 CNTNAP3Q9BZ76 1288 aa6.61□□□□□ -1.35
VRK1-202ENST00000553683 PHACTR1Q9C0D0 580 aa6.61□□□□□ -1.35
VRK1-202ENST00000553683 PARP3Q9Y6F1 533 aa6.61□□□□□ -1.35
VRK1-202ENST00000553683 GJA3Q9Y6H8 435 aa6.61□□□□□ -1.35
VRK1-202ENST00000553683 ATXN7O15265 892 aaPredicted RBP6.6□□□□□ -1.35
VRK1-202ENST00000553683 MX2P20592 715 aa6.6□□□□□ -1.35
VRK1-202ENST00000553683 OCLNQ16625 522 aa6.6□□□□□ -1.35
VRK1-202ENST00000553683 TMEM164Q5U3C3 297 aa6.6□□□□□ -1.35
VRK1-202ENST00000553683 ZSCAN1Q8NBB4 408 aa6.6□□□□□ -1.35
VRK1-202ENST00000553683 RHPN1Q8TCX5 695 aa6.6□□□□□ -1.35
VRK1-202ENST00000553683 STK32AQ8WU08 396 aa6.6□□□□□ -1.35
VRK1-202ENST00000553683 NEUROD4Q9HD90 331 aa6.6□□□□□ -1.35
VRK1-202ENST00000553683 STK17AQ9UEE5 414 aa6.6□□□□□ -1.35
VRK1-202ENST00000553683 EFSO43281 561 aa6.59□□□□□ -1.35
VRK1-202ENST00000553683 BNIP3LO60238 219 aa6.59□□□□□ -1.35
VRK1-202ENST00000553683 LORP23490 312 aaPredicted RBP6.59□□□□□ -1.35
VRK1-202ENST00000553683 TNP2Q05952 138 aa6.59□□□□□ -1.35
VRK1-202ENST00000553683 PDE4CQ08493 712 aa6.59□□□□□ -1.35
VRK1-202ENST00000553683 VTI1AQ96AJ9 217 aa6.59□□□□□ -1.35
VRK1-202ENST00000553683 C11orf16Q9NQ32 467 aa6.59□□□□□ -1.35
VRK1-202ENST00000553683 AVENQ9NQS1 362 aaPredicted RBP6.59□□□□□ -1.35
VRK1-202ENST00000553683 HCN4Q9Y3Q4 1203 aa6.59□□□□□ -1.35
VRK1-202ENST00000553683 PTCD1O75127 700 aaKnown RBP6.58□□□□□ -1.36
VRK1-202ENST00000553683 KCNQ4P56696 695 aa6.58□□□□□ -1.36
VRK1-202ENST00000553683 SH3PXD2AQ5TCZ1 1133 aa6.58□□□□□ -1.36
VRK1-202ENST00000553683 CHMP7Q8WUX9 453 aaPredicted RBP6.58□□□□□ -1.36
VRK1-202ENST00000553683 EFCC1Q9HA90 598 aa6.58□□□□□ -1.36
VRK1-202ENST00000553683 CXXC1Q9P0U4 656 aaPredicted RBP6.58□□□□□ -1.36
VRK1-202ENST00000553683 USTQ9Y2C2 406 aa6.58□□□□□ -1.36
VRK1-202ENST00000553683 GPR25O00155 361 aa6.57□□□□□ -1.36
VRK1-202ENST00000553683 ADAMTS2O95450 1211 aa6.57□□□□□ -1.36
VRK1-202ENST00000553683 MAPTP10636 758 aaKnown RBP6.57□□□□□ -1.36
VRK1-202ENST00000553683 FGFR3P22607 806 aa6.57□□□□□ -1.36
VRK1-202ENST00000553683 SUSD3Q96L08 255 aa6.57□□□□□ -1.36
VRK1-202ENST00000553683 GDF2Q9UK05 429 aaPredicted RBP6.57□□□□□ -1.36
VRK1-202ENST00000553683 IGF1RP08069 1367 aa6.57□□□□□ -1.36
VRK1-202ENST00000553683 TGFBR3LH3BV60 316 aa6.56□□□□□ -1.36
VRK1-202ENST00000553683 SUPT5HO00267 1087 aaKnown RBP6.56□□□□□ -1.36
VRK1-202ENST00000553683 LRRC69Q6ZNQ3 347 aa6.56□□□□□ -1.36
VRK1-202ENST00000553683 ABHD17AQ96GS6 310 aa6.56□□□□□ -1.36
VRK1-202ENST00000553683 TMEM88BA6NKF7 163 aa6.55□□□□□ -1.36
VRK1-202ENST00000553683 ARAFP10398 606 aa6.55□□□□□ -1.36
VRK1-202ENST00000553683 FKBP5Q13451 457 aaPredicted RBP6.55□□□□□ -1.36
VRK1-202ENST00000553683 C11orf91Q3C1V1 193 aa6.55□□□□□ -1.36
VRK1-202ENST00000553683 MARK1Q9P0L2 795 aa6.55□□□□□ -1.36
VRK1-202ENST00000553683 KHNYNO15037 678 aaKnown RBP6.54□□□□□ -1.36
VRK1-202ENST00000553683 PRMT3O60678 531 aa6.54□□□□□ -1.36
VRK1-202ENST00000553683 BMP4P12644 408 aa6.54□□□□□ -1.36
VRK1-202ENST00000553683 GOLGA6L1Q8N7Z2 621 aa6.54□□□□□ -1.36
VRK1-202ENST00000553683 KLRG1Q96E93 195 aa6.54□□□□□ -1.36
VRK1-202ENST00000553683 PRIMPOLQ96LW4 560 aa6.54□□□□□ -1.36
VRK1-202ENST00000553683 QTRT2Q9H974 415 aaKnown RBP6.54□□□□□ -1.36
VRK1-202ENST00000553683 ENAMQ9NRM1 1142 aa6.54□□□□□ -1.36
VRK1-202ENST00000553683 BCRP11274 1271 aa6.53□□□□□ -1.36
VRK1-202ENST00000553683 ATP2B4P23634 1241 aa6.53□□□□□ -1.36
VRK1-202ENST00000553683 TYRO3Q06418 890 aa6.53□□□□□ -1.36
VRK1-202ENST00000553683 ZNF385CQ66K41 422 aaPredicted RBP6.53□□□□□ -1.36
VRK1-202ENST00000553683 B4GALNT3Q6L9W6 998 aa6.53□□□□□ -1.36
VRK1-202ENST00000553683 BTLAQ7Z6A9 289 aa6.53□□□□□ -1.36
VRK1-202ENST00000553683 OXCT2Q9BYC2 517 aaPredicted RBP6.53□□□□□ -1.36
VRK1-202ENST00000553683 DMGDHQ9UI17 866 aaKnown RBP6.53□□□□□ -1.36
VRK1-202ENST00000553683 DCDC2BA2VCK2 349 aa6.52□□□□□ -1.37
VRK1-202ENST00000553683 C2CD2LO14523 706 aa6.52□□□□□ -1.37
VRK1-202ENST00000553683 CELA2BP08218 269 aaPredicted RBP6.52□□□□□ -1.37
VRK1-202ENST00000553683 EPB42P16452 691 aa6.52□□□□□ -1.37
VRK1-202ENST00000553683 SSFA2P28290 1259 aa6.52□□□□□ -1.37
VRK1-202ENST00000553683 CTBSQ01459 385 aa6.52□□□□□ -1.37
VRK1-202ENST00000553683 MAP3K10Q02779 954 aa6.52□□□□□ -1.37
VRK1-202ENST00000553683 ZNF468Q5VIY5 522 aaPredicted RBP6.52□□□□□ -1.37
VRK1-202ENST00000553683 C16orf46Q6P387 395 aa6.52□□□□□ -1.37
VRK1-202ENST00000553683 SLCO4C1Q6ZQN7 724 aa6.52□□□□□ -1.37
VRK1-202ENST00000553683 ACDQ96AP0 544 aa6.52□□□□□ -1.37
VRK1-202ENST00000553683 NGLY1Q96IV0 654 aa6.52□□□□□ -1.37
VRK1-202ENST00000553683 CEP63Q96MT8 703 aa6.52□□□□□ -1.37
VRK1-202ENST00000553683 KCNH4Q9UQ05 1017 aa6.52□□□□□ -1.37
VRK1-202ENST00000553683 OIP5O43482 229 aa6.51□□□□□ -1.37
VRK1-202ENST00000553683 LGR5O75473 907 aa6.51□□□□□ -1.37
VRK1-202ENST00000553683 ARHGEF15O94989 841 aa6.51□□□□□ -1.37
VRK1-202ENST00000553683 BRD2P25440 801 aaKnown RBP6.51□□□□□ -1.37
VRK1-202ENST00000553683 ADH6P28332 368 aa6.51□□□□□ -1.37
VRK1-202ENST00000553683 NEUROD1Q13562 356 aa6.51□□□□□ -1.37
VRK1-202ENST00000553683 COX20Q5RI15 118 aa6.51□□□□□ -1.37
VRK1-202ENST00000553683 ZNF280CQ8ND82 737 aa6.51□□□□□ -1.37
VRK1-202ENST00000553683 HSH2DQ96JZ2 352 aa6.51□□□□□ -1.37
VRK1-202ENST00000553683 BRD7Q9NPI1 651 aa6.51□□□□□ -1.37
VRK1-202ENST00000553683 MTMR7Q9Y216 660 aa6.51□□□□□ -1.37
VRK1-202ENST00000553683 BCS1LQ9Y276 419 aa6.51□□□□□ -1.37
VRK1-202ENST00000553683 DGKZQ13574 1117 aa6.5□□□□□ -1.37
VRK1-202ENST00000553683 LYPD4Q6UWN0 246 aa6.5□□□□□ -1.37
VRK1-202ENST00000553683 SVOPQ8N4V2 548 aa6.5□□□□□ -1.37
VRK1-202ENST00000553683 SLAIN2Q9P270 581 aa6.5□□□□□ -1.37
VRK1-202ENST00000553683 HCN2Q9UL51 889 aa6.5□□□□□ -1.37
VRK1-202ENST00000553683 LRFN2Q9ULH4 789 aa6.5□□□□□ -1.37
VRK1-202ENST00000553683 SIN3BO75182 1162 aa6.49□□□□□ -1.37
VRK1-202ENST00000553683 CD33P20138 364 aa6.49□□□□□ -1.37
VRK1-202ENST00000553683 INPP5BP32019 993 aa6.49□□□□□ -1.37
VRK1-202ENST00000553683 ARSDP51689 593 aa6.49□□□□□ -1.37
VRK1-202ENST00000553683 IFT43Q96FT9 208 aa6.49□□□□□ -1.37
VRK1-202ENST00000553683 FAM13BQ9NYF5 915 aa6.49□□□□□ -1.37
VRK1-202ENST00000553683 PRR12Q9ULL5 1215 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms