RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 CCDC9Q9Y3X0 531 aaKnown RBP15.72■□□□□ 0.11
SHMT2-205ENST00000553474 WDR17Q8IZU2 1322 aa15.72■□□□□ 0.11
SHMT2-205ENST00000553474 BAG4O95429 457 aaKnown RBP15.72■□□□□ 0.11
SHMT2-205ENST00000553474 DDX58O95786 925 aaKnown RBP15.72■□□□□ 0.11
SHMT2-205ENST00000553474 XRCC6P12956 609 aaKnown RBP eCLIP15.72■□□□□ 0.11
SHMT2-205ENST00000553474 LARP1Q6PKG0 1096 aaKnown RBP15.72■□□□□ 0.11
SHMT2-205ENST00000553474 KSR2Q6VAB6 950 aa15.72■□□□□ 0.11
SHMT2-205ENST00000553474 ERC1Q8IUD2 1116 aa15.72■□□□□ 0.11
SHMT2-205ENST00000553474 INTS4Q96HW7 963 aaKnown RBP15.72■□□□□ 0.11
SHMT2-205ENST00000553474 BCL9LQ86UU0 1499 aa15.72■□□□□ 0.11
SHMT2-205ENST00000553474 MPRIPQ6WCQ1 1025 aa15.71■□□□□ 0.11
SHMT2-205ENST00000553474 RILPL2Q969X0 211 aa15.71■□□□□ 0.11
SHMT2-205ENST00000553474 NBPF7P0C2Y1 421 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-205ENST00000553474 SSFA2P28290 1259 aa15.7■□□□□ 0.1
SHMT2-205ENST00000553474 CNTROBQ8N137 903 aa15.7■□□□□ 0.1
SHMT2-205ENST00000553474 GZF1Q9H116 711 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-205ENST00000553474 UNC5CLQ8IV45 518 aa15.7■□□□□ 0.1
SHMT2-205ENST00000553474 PI4K2BQ8TCG2 481 aa15.7■□□□□ 0.1
SHMT2-205ENST00000553474 UTYO14607 1347 aa15.69■□□□□ 0.1
SHMT2-205ENST00000553474 GLRX3O76003 335 aaKnown RBP15.69■□□□□ 0.1
SHMT2-205ENST00000553474 NEK4P51957 841 aa15.69■□□□□ 0.1
SHMT2-205ENST00000553474 CUL4AQ13619 759 aa15.69■□□□□ 0.1
SHMT2-205ENST00000553474 FNBP4Q8N3X1 1017 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-205ENST00000553474 GRPEL1Q9HAV7 217 aa15.69■□□□□ 0.1
SHMT2-205ENST00000553474 ANO2Q9NQ90 1003 aa15.69■□□□□ 0.1
SHMT2-205ENST00000553474 DDX21Q9NR30 783 aaKnown RBP eCLIP15.69■□□□□ 0.1
SHMT2-205ENST00000553474 FOXD4L1Q9NU39 408 aa15.69■□□□□ 0.1
SHMT2-205ENST00000553474 LINS1Q8NG48 757 aa15.68■□□□□ 0.1
SHMT2-205ENST00000553474 GPATCH3Q96I76 525 aa15.68■□□□□ 0.1
SHMT2-205ENST00000553474 PARP4Q9UKK3 1724 aaKnown RBP15.68■□□□□ 0.1
SHMT2-205ENST00000553474 KCNQ3O43525 872 aa15.67■□□□□ 0.1
SHMT2-205ENST00000553474 CLASRPQ8N2M8 674 aaKnown RBP15.67■□□□□ 0.1
SHMT2-205ENST00000553474 RAPGEF4Q8WZA2 1011 aa15.67■□□□□ 0.1
SHMT2-205ENST00000553474 C9orf78Q9NZ63 289 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-205ENST00000553474 HSPA4P34932 840 aa15.67■□□□□ 0.1
SHMT2-205ENST00000553474 IL1RAPL2Q9NP60 686 aa15.67■□□□□ 0.1
SHMT2-205ENST00000553474 SPG7Q9UQ90 795 aa15.67■□□□□ 0.1
SHMT2-205ENST00000553474 MAP3K2Q9Y2U5 619 aa15.67■□□□□ 0.1
SHMT2-205ENST00000553474 MRC1P22897 1456 aa15.66■□□□□ 0.1
SHMT2-205ENST00000553474 TSHZ3Q63HK5 1081 aa15.66■□□□□ 0.1
SHMT2-205ENST00000553474 TMX3Q96JJ7 454 aa15.66■□□□□ 0.1
SHMT2-205ENST00000553474 DDX49Q9Y6V7 483 aaKnown RBP15.66■□□□□ 0.1
SHMT2-205ENST00000553474 RAD50Q92878 1312 aa15.66■□□□□ 0.1
SHMT2-205ENST00000553474 SGSM2O43147 1006 aa15.65■□□□□ 0.1
SHMT2-205ENST00000553474 RUFY2Q8WXA3 655 aa15.65■□□□□ 0.1
SHMT2-205ENST00000553474 GLI3P10071 1580 aa15.65■□□□□ 0.1
SHMT2-205ENST00000553474 PKD1L3Q7Z443 1732 aa15.65■□□□□ 0.1
SHMT2-205ENST00000553474 TATP17735 454 aaPredicted RBP15.64■□□□□ 0.1
SHMT2-205ENST00000553474 SLC52A2Q9HAB3 445 aa15.64■□□□□ 0.1
SHMT2-205ENST00000553474 GRM8O00222 908 aa15.64■□□□□ 0.09
SHMT2-205ENST00000553474 OS9Q13438 667 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-205ENST00000553474 VPS72Q15906 364 aa15.64■□□□□ 0.09
SHMT2-205ENST00000553474 ZNF790Q6PG37 636 aa15.64■□□□□ 0.09
SHMT2-205ENST00000553474 NUTM1Q86Y26 1132 aa15.64■□□□□ 0.09
SHMT2-205ENST00000553474 CARD10Q9BWT7 1032 aa15.64■□□□□ 0.09
SHMT2-205ENST00000553474 ATRNO75882 1429 aa15.64■□□□□ 0.09
SHMT2-205ENST00000553474 SPATA31A1Q5TZJ5 1347 aa15.64■□□□□ 0.09
SHMT2-205ENST00000553474 SPATA31A5Q5VU36 1347 aa15.64■□□□□ 0.09
SHMT2-205ENST00000553474 SPATA31A7Q8IWB4 1347 aa15.64■□□□□ 0.09
SHMT2-205ENST00000553474 MEGF6O75095 1541 aa15.63■□□□□ 0.09
SHMT2-205ENST00000553474 A0A0G2JS52 829 aa15.63■□□□□ 0.09
SHMT2-205ENST00000553474 HIP1O00291 1037 aa15.63■□□□□ 0.09
SHMT2-205ENST00000553474 ZNF772Q68DY9 489 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-205ENST00000553474 KIAA1211Q6ZU35 1233 aa15.63■□□□□ 0.09
SHMT2-205ENST00000553474 ECHDC1Q9NTX5 307 aa15.63■□□□□ 0.09
SHMT2-205ENST00000553474 TRPC5Q9UL62 973 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-205ENST00000553474 ZNF445P59923 1031 aa15.62■□□□□ 0.09
SHMT2-205ENST00000553474 IFNL2Q8IZJ0 200 aa15.62■□□□□ 0.09
SHMT2-205ENST00000553474 ZGPATQ8N5A5 531 aaKnown RBP15.62■□□□□ 0.09
SHMT2-205ENST00000553474 QTRT2Q9H974 415 aaKnown RBP15.62■□□□□ 0.09
SHMT2-205ENST00000553474 LMBRD1Q9NUN5 540 aa15.62■□□□□ 0.09
SHMT2-205ENST00000553474 PHKG2P15735 406 aa15.62■□□□□ 0.09
SHMT2-205ENST00000553474 NEXNQ0ZGT2 675 aa15.62■□□□□ 0.09
SHMT2-205ENST00000553474 MCTP1Q6DN14 999 aa15.62■□□□□ 0.09
SHMT2-205ENST00000553474 PALD1Q9ULE6 856 aa15.62■□□□□ 0.09
SHMT2-205ENST00000553474 C5P01031 1676 aa15.62■□□□□ 0.09
SHMT2-205ENST00000553474 COL15A1P39059 1388 aa15.61■□□□□ 0.09
SHMT2-205ENST00000553474 KDM6AO15550 1401 aaPredicted RBP15.61■□□□□ 0.09
SHMT2-205ENST00000553474 FAM98CQ17RN3 349 aaKnown RBP15.61■□□□□ 0.09
SHMT2-205ENST00000553474 DCAF5Q96JK2 942 aa15.61■□□□□ 0.09
SHMT2-205ENST00000553474 BRD1O95696 1058 aa15.6■□□□□ 0.09
SHMT2-205ENST00000553474 MBD3O95983 291 aa15.6■□□□□ 0.09
SHMT2-205ENST00000553474 ANXA1P04083 346 aa15.6■□□□□ 0.09
SHMT2-205ENST00000553474 IFIT2P09913 472 aaKnown RBP15.6■□□□□ 0.09
SHMT2-205ENST00000553474 PDIA6Q15084 440 aa15.6■□□□□ 0.09
SHMT2-205ENST00000553474 EVI5LQ96CN4 794 aa15.6■□□□□ 0.09
SHMT2-205ENST00000553474 LSG1Q9H089 658 aaKnown RBP15.6■□□□□ 0.09
SHMT2-205ENST00000553474 RTN4Q9NQC3 1192 aaKnown RBP15.6■□□□□ 0.09
SHMT2-205ENST00000553474 SHANK3Q9BYB0 1731 aa15.6■□□□□ 0.09
SHMT2-205ENST00000553474 PROSER3Q2NL68 480 aa15.59■□□□□ 0.09
SHMT2-205ENST00000553474 GJD4Q96KN9 370 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-205ENST00000553474 ZDHHC9Q9Y397 364 aa15.59■□□□□ 0.09
SHMT2-205ENST00000553474 LAMB4A4D0S4 1761 aa15.59■□□□□ 0.09
SHMT2-205ENST00000553474 IL2RBP14784 551 aa15.59■□□□□ 0.09
SHMT2-205ENST00000553474 ANP32BQ92688 251 aaKnown RBP15.59■□□□□ 0.09
SHMT2-205ENST00000553474 DIAPH3Q9NSV4 1193 aa15.59■□□□□ 0.09
SHMT2-205ENST00000553474 THSD7AQ9UPZ6 1657 aa15.58■□□□□ 0.09
SHMT2-205ENST00000553474 SNRPA1P09661 255 aaKnown RBP15.58■□□□□ 0.08
SHMT2-205ENST00000553474 PDIA4P13667 645 aaKnown RBP15.58■□□□□ 0.08
SHMT2-205ENST00000553474 G3BP1Q13283 466 aaKnown RBP eCLIP15.58■□□□□ 0.082e-7■■■□□ 18
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms