RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	KCNA1	Q09470	495 aa		6.25	□□□□□ -1.41
USP44-208	ENST00000552440	CABP1	Q9NZU7	370 aa		6.25	□□□□□ -1.41
USP44-208	ENST00000552440	PRR12	Q9ULL5	1215 aa		6.25	□□□□□ -1.41
USP44-208	ENST00000552440		K7ELQ4	463 aa	Predicted RBP	6.24	□□□□□ -1.41
USP44-208	ENST00000552440	C2CD2L	O14523	706 aa		6.24	□□□□□ -1.41
USP44-208	ENST00000552440	PROC	P04070	461 aa		6.24	□□□□□ -1.41
USP44-208	ENST00000552440	ATP4A	P20648	1035 aa		6.24	□□□□□ -1.41
USP44-208	ENST00000552440	ALAS2	P22557	587 aa		6.24	□□□□□ -1.41
USP44-208	ENST00000552440	TNP2	Q05952	138 aa		6.24	□□□□□ -1.41
USP44-208	ENST00000552440	LINC00114	Q6XXX2	140 aa		6.24	□□□□□ -1.41
USP44-208	ENST00000552440	TRIM50	Q86XT4	487 aa		6.24	□□□□□ -1.41
USP44-208	ENST00000552440	PPP1R12C	Q9BZL4	782 aa		6.24	□□□□□ -1.41
USP44-208	ENST00000552440	DNAAF2	Q9NVR5	837 aa	Known RBP	6.24	□□□□□ -1.41
USP44-208	ENST00000552440	NEURL1B	A8MQ27	555 aa		6.23	□□□□□ -1.41
USP44-208	ENST00000552440	MAPT	P10636	758 aa	Known RBP	6.23	□□□□□ -1.41
USP44-208	ENST00000552440	GRIN2C	Q14957	1233 aa		6.23	□□□□□ -1.41
USP44-208	ENST00000552440	BICDL1	Q6ZP65	573 aa		6.23	□□□□□ -1.41
USP44-208	ENST00000552440	SERTAD1	Q9UHV2	236 aa		6.23	□□□□□ -1.41
USP44-208	ENST00000552440	KRBA1	A5PL33	1030 aa		6.22	□□□□□ -1.41
USP44-208	ENST00000552440	KHNYN	O15037	678 aa	Known RBP	6.22	□□□□□ -1.41
USP44-208	ENST00000552440	NEUROD1	Q13562	356 aa		6.22	□□□□□ -1.41
USP44-208	ENST00000552440	C1orf229	Q6ZS94	237 aa	Predicted RBP	6.22	□□□□□ -1.41
USP44-208	ENST00000552440	ALG2	Q9H553	416 aa		6.22	□□□□□ -1.41
USP44-208	ENST00000552440	MARK1	Q9P0L2	795 aa		6.22	□□□□□ -1.41
USP44-208	ENST00000552440	CHMP3	Q9Y3E7	222 aa		6.22	□□□□□ -1.41
USP44-208	ENST00000552440	TMEM229A	B2RXF0	380 aa		6.22	□□□□□ -1.41
USP44-208	ENST00000552440	BAG6	P46379	1132 aa		6.22	□□□□□ -1.41
USP44-208	ENST00000552440	PSME1	Q06323	249 aa		6.22	□□□□□ -1.41
USP44-208	ENST00000552440	ZNF468	Q5VIY5	522 aa	Predicted RBP	6.22	□□□□□ -1.41
USP44-208	ENST00000552440	ZIC5	Q96T25	663 aa		6.22	□□□□□ -1.41
USP44-208	ENST00000552440	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	6.22	□□□□□ -1.41
USP44-208	ENST00000552440	PCDHGA11	Q9Y5H2	935 aa		6.22	□□□□□ -1.41
USP44-208	ENST00000552440	PALM3	A6NDB9	673 aa	Predicted RBP	6.21	□□□□□ -1.42
USP44-208	ENST00000552440	PPM1G	O15355	546 aa	Predicted RBP	6.21	□□□□□ -1.42
USP44-208	ENST00000552440	SKI	P12755	728 aa		6.21	□□□□□ -1.42
USP44-208	ENST00000552440	DGKG	P49619	791 aa		6.21	□□□□□ -1.42
USP44-208	ENST00000552440	ATP1A2	P50993	1020 aa		6.21	□□□□□ -1.42
USP44-208	ENST00000552440	CHSY3	Q70JA7	882 aa		6.21	□□□□□ -1.42
USP44-208	ENST00000552440	UBE2Q2	Q8WVN8	375 aa		6.21	□□□□□ -1.42
USP44-208	ENST00000552440	CARNS1	A5YM72	827 aa		6.2	□□□□□ -1.42
USP44-208	ENST00000552440	GTF2I	P78347	998 aa		6.2	□□□□□ -1.42
USP44-208	ENST00000552440	TEAD4	Q15561	434 aa		6.2	□□□□□ -1.42
USP44-208	ENST00000552440	CCDC27	Q2M243	656 aa		6.2	□□□□□ -1.42
USP44-208	ENST00000552440	UCN2	Q96RP3	112 aa		6.2	□□□□□ -1.42
USP44-208	ENST00000552440	SCHIP1	Q9P0W5	487 aa	Predicted RBP	6.2	□□□□□ -1.42
USP44-208	ENST00000552440	ANKIB1	Q9P2G1	1089 aa		6.2	□□□□□ -1.42
USP44-208	ENST00000552440	DCDC2B	A2VCK2	349 aa		6.2	□□□□□ -1.42
USP44-208	ENST00000552440	STAU1	O95793	577 aa	Known RBP	6.2	□□□□□ -1.42
USP44-208	ENST00000552440	ITGB2	P05107	769 aa		6.2	□□□□□ -1.42
USP44-208	ENST00000552440	COL8A1	P27658	744 aa		6.2	□□□□□ -1.42
USP44-208	ENST00000552440	LMOD1	P29536	600 aa	Predicted RBP	6.19	□□□□□ -1.42
USP44-208	ENST00000552440	ZNF295-AS1	Q8N0V1	137 aa		6.19	□□□□□ -1.42
USP44-208	ENST00000552440	IGSF5	Q9NSI5	407 aa		6.19	□□□□□ -1.42
USP44-208	ENST00000552440	RBM19	Q9Y4C8	960 aa	Known RBP	6.19	□□□□□ -1.42
USP44-208	ENST00000552440	HOXB4	P17483	251 aa	Predicted RBP	6.18	□□□□□ -1.42
USP44-208	ENST00000552440	CD33	P20138	364 aa		6.18	□□□□□ -1.42
USP44-208	ENST00000552440	HIF1A	Q16665	826 aa		6.18	□□□□□ -1.42
USP44-208	ENST00000552440	PRRT3	Q5FWE3	981 aa		6.18	□□□□□ -1.42
USP44-208	ENST00000552440	L3MBTL2	Q969R5	705 aa		6.18	□□□□□ -1.42
USP44-208	ENST00000552440	TFIP11	Q9UBB9	837 aa	Known RBP	6.18	□□□□□ -1.42
USP44-208	ENST00000552440	ELOA3C	A0A087WX78	387 aa	Predicted RBP	6.18	□□□□□ -1.42
USP44-208	ENST00000552440	ELOA3D	A6NLF2	546 aa	Predicted RBP	6.18	□□□□□ -1.42
USP44-208	ENST00000552440	EFS	O43281	561 aa		6.18	□□□□□ -1.42
USP44-208	ENST00000552440	SIN3B	O75182	1162 aa		6.18	□□□□□ -1.42
USP44-208	ENST00000552440	SPATA31C1	P0DKV0	1188 aa		6.18	□□□□□ -1.42
USP44-208	ENST00000552440	NOS2	P35228	1153 aa		6.18	□□□□□ -1.42
USP44-208	ENST00000552440	ELOA3B	Q3SY89	546 aa		6.18	□□□□□ -1.42
USP44-208	ENST00000552440	C1orf53	Q5VUE5	145 aa		6.18	□□□□□ -1.42
USP44-208	ENST00000552440	ELOA3	Q8NG57	546 aa		6.18	□□□□□ -1.42
USP44-208	ENST00000552440	ZNF232	Q9UNY5	417 aa		6.18	□□□□□ -1.42
USP44-208	ENST00000552440	SERTM1	A2A2V5	107 aa		6.17	□□□□□ -1.42
USP44-208	ENST00000552440	UNCX	A6NJT0	531 aa		6.17	□□□□□ -1.42
USP44-208	ENST00000552440	TMEM88B	A6NKF7	163 aa		6.17	□□□□□ -1.42
USP44-208	ENST00000552440	ATG7	O95352	703 aa		6.17	□□□□□ -1.42
USP44-208	ENST00000552440	CANX	P27824	592 aa	Known RBP	6.17	□□□□□ -1.42
USP44-208	ENST00000552440	PLEKHM2	Q8IWE5	1019 aa		6.17	□□□□□ -1.42
USP44-208	ENST00000552440	EFCC1	Q9HA90	598 aa		6.17	□□□□□ -1.42
USP44-208	ENST00000552440	ZNF358	Q9NW07	568 aa		6.17	□□□□□ -1.42
USP44-208	ENST00000552440	IVNS1ABP	Q9Y6Y0	642 aa		6.17	□□□□□ -1.42
USP44-208	ENST00000552440	ADARB2-AS1	A8MUL3	147 aa		6.16	□□□□□ -1.42
USP44-208	ENST00000552440	C1QTNF9B	B2RNN3	333 aa		6.16	□□□□□ -1.42
USP44-208	ENST00000552440		M0R2N6	131 aa		6.16	□□□□□ -1.42
USP44-208	ENST00000552440	EML1	O00423	815 aa		6.16	□□□□□ -1.42
USP44-208	ENST00000552440	NCOA4	Q13772	614 aa		6.16	□□□□□ -1.42
USP44-208	ENST00000552440	FAM9A	Q8IZU1	332 aa	Predicted RBP	6.16	□□□□□ -1.42
USP44-208	ENST00000552440	SUV39H2	Q9H5I1	410 aa		6.16	□□□□□ -1.42
USP44-208	ENST00000552440	VRTN	Q9H8Y1	702 aa		6.16	□□□□□ -1.42
USP44-208	ENST00000552440	USP17L5	A8MUK1	530 aa		6.15	□□□□□ -1.42
USP44-208	ENST00000552440	PCBP4	P57723	403 aa	Known RBP	6.15	□□□□□ -1.42
USP44-208	ENST00000552440	PSMA6	P60900	246 aa	Known RBP	6.15	□□□□□ -1.42
USP44-208	ENST00000552440	FCHSD1	Q86WN1	690 aa		6.15	□□□□□ -1.42
USP44-208	ENST00000552440	NACC1	Q96RE7	527 aa		6.15	□□□□□ -1.42
USP44-208	ENST00000552440	CWC22	Q9HCG8	908 aa	Known RBP	6.15	□□□□□ -1.42
USP44-208	ENST00000552440	MAFB	Q9Y5Q3	323 aa	Predicted RBP	6.15	□□□□□ -1.42
USP44-208	ENST00000552440	APBA3	O96018	575 aa		6.15	□□□□□ -1.43
USP44-208	ENST00000552440	SND1	Q7KZF4	910 aa	Known RBP eCLIP	6.15	□□□□□ -1.43
USP44-208	ENST00000552440	CD163	Q86VB7	1156 aa		6.15	□□□□□ -1.43
USP44-208	ENST00000552440	SLC9A9	Q8IVB4	645 aa		6.15	□□□□□ -1.43
USP44-208	ENST00000552440	LARGE2	Q8N3Y3	721 aa		6.15	□□□□□ -1.43
USP44-208	ENST00000552440	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	6.15	□□□□□ -1.43

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms