RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 AAMPQ13685 434 aa12.19□□□□□ -0.46
LIMA1-211ENST00000552338 CLEC4GQ6UXB4 293 aa12.19□□□□□ -0.46
LIMA1-211ENST00000552338 ANKRD13DQ6ZTN6 518 aa12.19□□□□□ -0.46
LIMA1-211ENST00000552338 DZIP1LQ8IYY4 767 aaKnown RBP12.19□□□□□ -0.46
LIMA1-211ENST00000552338 XAGE3Q8WTP9 111 aa12.19□□□□□ -0.46
LIMA1-211ENST00000552338 NECTIN2Q92692 538 aa12.19□□□□□ -0.46
LIMA1-211ENST00000552338 UPF1Q92900 1129 aaKnown RBP eCLIP12.19□□□□□ -0.46
LIMA1-211ENST00000552338 MAP3K15Q6ZN16 1313 aa12.18□□□□□ -0.46
LIMA1-211ENST00000552338 PI4KAP2A4QPH2 592 aa12.18□□□□□ -0.46
LIMA1-211ENST00000552338 ANXA1P04083 346 aa12.18□□□□□ -0.46
LIMA1-211ENST00000552338 MYL6BP14649 208 aa12.18□□□□□ -0.46
LIMA1-211ENST00000552338 SSFA2P28290 1259 aa12.18□□□□□ -0.46
LIMA1-211ENST00000552338 FKBP5Q13451 457 aaPredicted RBP12.18□□□□□ -0.46
LIMA1-211ENST00000552338 PI4KAP1Q8N8J0 262 aa12.18□□□□□ -0.46
LIMA1-211ENST00000552338 DNAAF4Q8WXU2 420 aa12.18□□□□□ -0.46
LIMA1-211ENST00000552338 SCN7AQ01118 1682 aa12.18□□□□□ -0.46
LIMA1-211ENST00000552338 COL15A1P39059 1388 aa12.18□□□□□ -0.46
LIMA1-211ENST00000552338 PLIN1O60240 522 aa12.17□□□□□ -0.46
LIMA1-211ENST00000552338 RLBP1P12271 317 aa12.17□□□□□ -0.46
LIMA1-211ENST00000552338 CANXP27824 592 aaKnown RBP12.17□□□□□ -0.46
LIMA1-211ENST00000552338 CCT4P50991 539 aaKnown RBP12.17□□□□□ -0.46
LIMA1-211ENST00000552338 EN1Q05925 392 aaPredicted RBP12.17□□□□□ -0.46
LIMA1-211ENST00000552338 EZH2Q15910 746 aaKnown RBP12.17□□□□□ -0.46
LIMA1-211ENST00000552338 BEND3Q5T5X7 828 aa12.17□□□□□ -0.46
LIMA1-211ENST00000552338 GIGYF2Q6Y7W6 1299 aaKnown RBP12.17□□□□□ -0.46
LIMA1-211ENST00000552338 FRAT1Q92837 279 aaPredicted RBP12.17□□□□□ -0.46
LIMA1-211ENST00000552338 METTL22Q9BUU2 404 aaPredicted RBP12.17□□□□□ -0.46
LIMA1-211ENST00000552338 RTCBQ9Y3I0 505 aaKnown RBP12.17□□□□□ -0.46
LIMA1-211ENST00000552338 ALDH1L1O75891 902 aa12.16□□□□□ -0.46
LIMA1-211ENST00000552338 CAMTA2O94983 1202 aa12.16□□□□□ -0.46
LIMA1-211ENST00000552338 KCNQ4P56696 695 aa12.16□□□□□ -0.46
LIMA1-211ENST00000552338 MVPQ14764 893 aaKnown RBP12.16□□□□□ -0.46
LIMA1-211ENST00000552338 TTLL7Q6ZT98 887 aa12.16□□□□□ -0.46
LIMA1-211ENST00000552338 FLAD1Q8NFF5 587 aa12.16□□□□□ -0.46
LIMA1-211ENST00000552338 NARFQ9UHQ1 456 aa12.16□□□□□ -0.46
LIMA1-211ENST00000552338 PIP4K2AP48426 406 aaPredicted RBP12.15□□□□□ -0.46
LIMA1-211ENST00000552338 TCIRG1Q13488 830 aa12.15□□□□□ -0.46
LIMA1-211ENST00000552338 HSP90AB3PQ58FF7 597 aa12.15□□□□□ -0.46
LIMA1-211ENST00000552338 C20orf194Q5TEA3 1177 aa12.15□□□□□ -0.46
LIMA1-211ENST00000552338 DZIP3Q86Y13 1208 aaKnown RBP12.15□□□□□ -0.46
LIMA1-211ENST00000552338 LINS1Q8NG48 757 aa12.15□□□□□ -0.46
LIMA1-211ENST00000552338 ISCA1Q9BUE6 129 aa12.15□□□□□ -0.46
LIMA1-211ENST00000552338 CHMP4BQ9H444 224 aaKnown RBP12.15□□□□□ -0.46
LIMA1-211ENST00000552338 MAP3K2Q9Y2U5 619 aa12.15□□□□□ -0.46
LIMA1-211ENST00000552338 AFDNP55196 1824 aaKnown RBP12.15□□□□□ -0.46
LIMA1-211ENST00000552338 COL24A1Q17RW2 1714 aa12.14□□□□□ -0.47
LIMA1-211ENST00000552338 UTYO14607 1347 aa12.14□□□□□ -0.47
LIMA1-211ENST00000552338 ZBTB7BO15156 539 aaPredicted RBP12.14□□□□□ -0.47
LIMA1-211ENST00000552338 GNPATO15228 680 aa12.14□□□□□ -0.47
LIMA1-211ENST00000552338 TRAPPC3LQ5T215 181 aa12.14□□□□□ -0.47
LIMA1-211ENST00000552338 RIC3Q7Z5B4 369 aa12.14□□□□□ -0.47
LIMA1-211ENST00000552338 DEFB132Q7Z7B7 95 aa12.14□□□□□ -0.47
LIMA1-211ENST00000552338 TMEM57Q8N5G2 664 aa12.14□□□□□ -0.47
LIMA1-211ENST00000552338 ARHGEF1Q92888 912 aaKnown RBP12.14□□□□□ -0.47
LIMA1-211ENST00000552338 AK7Q96M32 723 aa12.14□□□□□ -0.47
LIMA1-211ENST00000552338 DDX19BQ9UMR2 479 aa12.14□□□□□ -0.47
LIMA1-211ENST00000552338 TNNQ9UQP3 1299 aa12.14□□□□□ -0.47
LIMA1-211ENST00000552338 USP42Q9H9J4 1324 aaKnown RBP12.13□□□□□ -0.47
LIMA1-211ENST00000552338 F6X3S4 739 aa12.13□□□□□ -0.47
LIMA1-211ENST00000552338 IGKV5-2P06315 115 aa12.13□□□□□ -0.47
LIMA1-211ENST00000552338 AIMP1Q12904 312 aaKnown RBP12.13□□□□□ -0.47
LIMA1-211ENST00000552338 SLC15A2Q16348 729 aa12.13□□□□□ -0.47
LIMA1-211ENST00000552338 KIF6Q6ZMV9 814 aa12.13□□□□□ -0.47
LIMA1-211ENST00000552338 NPM2Q86SE8 214 aaKnown RBP12.13□□□□□ -0.47
LIMA1-211ENST00000552338 AMIGO3Q86WK7 504 aa12.13□□□□□ -0.47
LIMA1-211ENST00000552338 FTSJ3Q8IY81 847 aaKnown RBP12.13□□□□□ -0.47
LIMA1-211ENST00000552338 ZNF34Q8IZ26 560 aa12.13□□□□□ -0.47
LIMA1-211ENST00000552338 CCDC191Q8NCU4 936 aa12.13□□□□□ -0.47
LIMA1-211ENST00000552338 PANK1Q8TE04 598 aa12.13□□□□□ -0.47
LIMA1-211ENST00000552338 BCL2L12Q9HB09 334 aa12.13□□□□□ -0.47
LIMA1-211ENST00000552338 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.12□□□□□ -0.47
LIMA1-211ENST00000552338 NEXNQ0ZGT2 675 aa12.12□□□□□ -0.47
LIMA1-211ENST00000552338 HLFQ16534 295 aa12.12□□□□□ -0.47
LIMA1-211ENST00000552338 ZNF827Q17R98 1081 aa12.12□□□□□ -0.47
LIMA1-211ENST00000552338 ILDR2Q71H61 639 aa12.12□□□□□ -0.47
LIMA1-211ENST00000552338 CLUAP1Q96AJ1 413 aa12.12□□□□□ -0.47
LIMA1-211ENST00000552338 SRCIN1Q9C0H9 1055 aa12.12□□□□□ -0.47
LIMA1-211ENST00000552338 ZBTB40Q9NUA8 1239 aa12.12□□□□□ -0.47
LIMA1-211ENST00000552338 NEURL1BA8MQ27 555 aa12.11□□□□□ -0.47
LIMA1-211ENST00000552338 USP44Q9H0E7 712 aa12.11□□□□□ -0.47
LIMA1-211ENST00000552338 TBC1D2BQ9UPU7 963 aa12.11□□□□□ -0.47
LIMA1-211ENST00000552338 ZNF652Q9Y2D9 606 aa12.11□□□□□ -0.47
LIMA1-211ENST00000552338 COG6Q9Y2V7 657 aa12.11□□□□□ -0.47
LIMA1-211ENST00000552338 NRXN2Q9P2S2 1712 aa12.11□□□□□ -0.47
LIMA1-211ENST00000552338 PNPLA7Q6ZV29 1317 aa12.11□□□□□ -0.47
LIMA1-211ENST00000552338 H7C1W4 665 aa12.1□□□□□ -0.47
LIMA1-211ENST00000552338 GCKRQ14397 625 aa12.1□□□□□ -0.47
LIMA1-211ENST00000552338 PARP10Q53GL7 1025 aa12.1□□□□□ -0.47
LIMA1-211ENST00000552338 ZBTB3Q9H5J0 574 aa12.1□□□□□ -0.47
LIMA1-211ENST00000552338 ANO8Q9HCE9 1232 aaPredicted RBP12.1□□□□□ -0.47
LIMA1-211ENST00000552338 ZPR1O75312 459 aa12.09□□□□□ -0.47
LIMA1-211ENST00000552338 GYS1P13807 737 aa12.09□□□□□ -0.47
LIMA1-211ENST00000552338 TM4SF1P30408 202 aa12.09□□□□□ -0.47
LIMA1-211ENST00000552338 RFC4P35249 363 aa12.09□□□□□ -0.47
LIMA1-211ENST00000552338 CASP7P55210 303 aa12.09□□□□□ -0.47
LIMA1-211ENST00000552338 NLRP10Q86W26 655 aa12.09□□□□□ -0.47
LIMA1-211ENST00000552338 COL23A1Q86Y22 540 aaPredicted RBP12.09□□□□□ -0.47
LIMA1-211ENST00000552338 SLC16A10Q8TF71 515 aa12.09□□□□□ -0.47
LIMA1-211ENST00000552338 CRBNQ96SW2 442 aa12.09□□□□□ -0.47
LIMA1-211ENST00000552338 MYD88Q99836 296 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms