RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 SLX4Q8IY92 1834 aa16.35■□□□□ 0.21
PTCH1-222ENST00000551425 IL13P35225 146 aa16.34■□□□□ 0.21
PTCH1-222ENST00000551425 CCDC93Q567U6 631 aa16.34■□□□□ 0.21
PTCH1-222ENST00000551425 MAP1SQ66K74 1059 aaPredicted RBP16.34■□□□□ 0.21
PTCH1-222ENST00000551425 ABT1Q9ULW3 272 aaKnown RBP16.34■□□□□ 0.21
PTCH1-222ENST00000551425 FKBP4Q02790 459 aaKnown RBP eCLIP16.33■□□□□ 0.2
PTCH1-222ENST00000551425 SETDB2Q96T68 719 aa16.33■□□□□ 0.2
PTCH1-222ENST00000551425 THSD7BQ9C0I4 1608 aa16.33■□□□□ 0.2
PTCH1-222ENST00000551425 SCN7AQ01118 1682 aa16.33■□□□□ 0.2
PTCH1-222ENST00000551425 ST5P78524 1137 aa16.32■□□□□ 0.2
PTCH1-222ENST00000551425 BEGAINQ9BUH8 593 aa16.32■□□□□ 0.2
PTCH1-222ENST00000551425 DDX21Q9NR30 783 aaKnown RBP eCLIP16.32■□□□□ 0.2
PTCH1-222ENST00000551425 TBC1D2BQ9UPU7 963 aa16.32■□□□□ 0.2
PTCH1-222ENST00000551425 ARFGEF2Q9Y6D5 1785 aa16.31■□□□□ 0.2
PTCH1-222ENST00000551425 RNF123Q5XPI4 1314 aa16.31■□□□□ 0.2
PTCH1-222ENST00000551425 NPHP1O15259 732 aa16.31■□□□□ 0.2
PTCH1-222ENST00000551425 IL6STP40189 918 aaPredicted RBP16.31■□□□□ 0.2
PTCH1-222ENST00000551425 ECE1P42892 770 aa16.31■□□□□ 0.2
PTCH1-222ENST00000551425 CAPNS2Q96L46 248 aa16.31■□□□□ 0.2
PTCH1-222ENST00000551425 UBR2Q8IWV8 1755 aa16.31■□□□□ 0.2
PTCH1-222ENST00000551425 FZD9O00144 591 aa16.3■□□□□ 0.2
PTCH1-222ENST00000551425 GPC2Q8N158 579 aa16.3■□□□□ 0.2
PTCH1-222ENST00000551425 TEX13AQ9BXU3 409 aaPredicted RBP16.3■□□□□ 0.2
PTCH1-222ENST00000551425 ZNF277Q9NRM2 450 aaPredicted RBP16.3■□□□□ 0.2
PTCH1-222ENST00000551425 CAMTA2O94983 1202 aa16.29■□□□□ 0.2
PTCH1-222ENST00000551425 NPR1P16066 1061 aa16.29■□□□□ 0.2
PTCH1-222ENST00000551425 MORC1Q86VD1 984 aa16.29■□□□□ 0.2
PTCH1-222ENST00000551425 TTC5Q8N0Z6 440 aa16.29■□□□□ 0.2
PTCH1-222ENST00000551425 GPR101Q96P66 508 aaPredicted RBP16.29■□□□□ 0.2
PTCH1-222ENST00000551425 KLRG2A4D1S0 409 aaPredicted RBP16.28■□□□□ 0.2
PTCH1-222ENST00000551425 RTKN2Q8IZC4 609 aa16.28■□□□□ 0.2
PTCH1-222ENST00000551425 HEG1Q9ULI3 1381 aa16.27■□□□□ 0.2
PTCH1-222ENST00000551425 MTHFSDQ2M296 383 aaKnown RBP16.27■□□□□ 0.2
PTCH1-222ENST00000551425 ZNF496Q96IT1 587 aaPredicted RBP16.27■□□□□ 0.2
PTCH1-222ENST00000551425 PANK3Q9H999 370 aa16.27■□□□□ 0.2
PTCH1-222ENST00000551425 ZNF330Q9Y3S2 320 aaPredicted RBP16.27■□□□□ 0.2
PTCH1-222ENST00000551425 TNRC18O15417 2968 aaPredicted RBP16.26■□□□□ 0.19
PTCH1-222ENST00000551425 MAP2K2P36507 400 aa16.26■□□□□ 0.19
PTCH1-222ENST00000551425 IARSP41252 1262 aaKnown RBP16.26■□□□□ 0.19
PTCH1-222ENST00000551425 CYP4F22Q6NT55 531 aa16.26■□□□□ 0.19
PTCH1-222ENST00000551425 POLR3GLQ9BT43 218 aa16.26■□□□□ 0.19
PTCH1-222ENST00000551425 MCOLN1Q9GZU1 580 aa16.26■□□□□ 0.19
PTCH1-222ENST00000551425 CACNA1SQ13698 1873 aa16.25■□□□□ 0.19
PTCH1-222ENST00000551425 CA12O43570 354 aa16.25■□□□□ 0.19
PTCH1-222ENST00000551425 ZNF790Q6PG37 636 aa16.25■□□□□ 0.19
PTCH1-222ENST00000551425 PAXIP1Q6ZW49 1069 aaPredicted RBP16.25■□□□□ 0.19
PTCH1-222ENST00000551425 NPM2Q86SE8 214 aaKnown RBP16.25■□□□□ 0.19
PTCH1-222ENST00000551425 NBPF5PQ86XG9 351 aaPredicted RBP16.25■□□□□ 0.19
PTCH1-222ENST00000551425 CST9Q5W186 159 aa16.24■□□□□ 0.19
PTCH1-222ENST00000551425 OLFM4Q6UX06 510 aa16.24■□□□□ 0.19
PTCH1-222ENST00000551425 CLEC4GQ6UXB4 293 aa16.24■□□□□ 0.19
PTCH1-222ENST00000551425 SYNE4Q8N205 404 aa16.24■□□□□ 0.19
PTCH1-222ENST00000551425 TLL2Q9Y6L7 1015 aa16.24■□□□□ 0.19
PTCH1-222ENST00000551425 LTBP1Q14766 1721 aa16.23■□□□□ 0.19
PTCH1-222ENST00000551425 A1BGP04217 495 aa16.23■□□□□ 0.19
PTCH1-222ENST00000551425 HMOX1P09601 288 aa16.23■□□□□ 0.19
PTCH1-222ENST00000551425 FMR1Q06787 632 aaKnown RBP eCLIP16.23■□□□□ 0.19
PTCH1-222ENST00000551425 GRM1Q13255 1194 aa16.23■□□□□ 0.19
PTCH1-222ENST00000551425 DZIP3Q86Y13 1208 aaKnown RBP16.23■□□□□ 0.19
PTCH1-222ENST00000551425 JDP2Q8WYK2 163 aa16.23■□□□□ 0.19
PTCH1-222ENST00000551425 CFAP44Q96MT7 982 aa16.23■□□□□ 0.19
PTCH1-222ENST00000551425 PSMD1Q99460 953 aa16.23■□□□□ 0.19
PTCH1-222ENST00000551425 TSKSQ9UJT2 592 aa16.23■□□□□ 0.19
PTCH1-222ENST00000551425 LMOD1P29536 600 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-222ENST00000551425 SNED1Q8TER0 1413 aa16.21■□□□□ 0.19
PTCH1-222ENST00000551425 AOC2O75106 756 aa16.21■□□□□ 0.19
PTCH1-222ENST00000551425 ALDH1B1P30837 517 aa16.21■□□□□ 0.19
PTCH1-222ENST00000551425 EIF6P56537 245 aaKnown RBP16.21■□□□□ 0.19
PTCH1-222ENST00000551425 USP50Q70EL3 339 aaPredicted RBP16.21■□□□□ 0.19
PTCH1-222ENST00000551425 FMNL2Q96PY5 1086 aa16.21■□□□□ 0.19
PTCH1-222ENST00000551425 BCORQ6W2J9 1755 aa16.21■□□□□ 0.18
PTCH1-222ENST00000551425 TRAF5O00463 557 aa16.2■□□□□ 0.18
PTCH1-222ENST00000551425 EPS15P42566 896 aa16.2■□□□□ 0.18
PTCH1-222ENST00000551425 SCNN1DP51172 638 aa16.2■□□□□ 0.18
PTCH1-222ENST00000551425 BRPF1P55201 1214 aaPredicted RBP16.2■□□□□ 0.18
PTCH1-222ENST00000551425 TEFQ10587 303 aa16.2■□□□□ 0.18
PTCH1-222ENST00000551425 TPTE2Q6XPS3 522 aa16.2■□□□□ 0.18
PTCH1-222ENST00000551425 HHIPL1Q96JK4 782 aa16.2■□□□□ 0.18
PTCH1-222ENST00000551425 GJA3Q9Y6H8 435 aa16.2■□□□□ 0.18
PTCH1-222ENST00000551425 RGL2O15211 777 aa16.19■□□□□ 0.18
PTCH1-222ENST00000551425 DGKZQ13574 1117 aa16.19■□□□□ 0.18
PTCH1-222ENST00000551425 SAPCD2Q86UD0 394 aa16.19■□□□□ 0.18
PTCH1-222ENST00000551425 IL17REQ8NFR9 667 aa16.19■□□□□ 0.18
PTCH1-222ENST00000551425 ZNF652Q9Y2D9 606 aa16.19■□□□□ 0.18
PTCH1-222ENST00000551425 CC2D2BQ6DHV5 1058 aa16.18■□□□□ 0.18
PTCH1-222ENST00000551425 COL4A5P29400 1685 aa16.18■□□□□ 0.18
PTCH1-222ENST00000551425 GNAT3A8MTJ3 354 aa16.16■□□□□ 0.18
PTCH1-222ENST00000551425 NIP7Q9Y221 180 aaKnown RBP eCLIP16.16■□□□□ 0.18
PTCH1-222ENST00000551425 KNSTRNQ9Y448 316 aa16.16■□□□□ 0.18
PTCH1-222ENST00000551425 TRPM7Q96QT4 1865 aa16.16■□□□□ 0.18
PTCH1-222ENST00000551425 CRY2Q49AN0 593 aa16.15■□□□□ 0.18
PTCH1-222ENST00000551425 GRIPAP1Q4V328 841 aa16.15■□□□□ 0.18
PTCH1-222ENST00000551425 PDE4DIPQ5VU43 2346 aa16.15■□□□□ 0.18
PTCH1-222ENST00000551425 USP16Q9Y5T5 823 aa16.15■□□□□ 0.18
PTCH1-222ENST00000551425 SIPA1L3O60292 1781 aaPredicted RBP16.14■□□□□ 0.17
PTCH1-222ENST00000551425 DIAPH1O60610 1272 aaKnown RBP16.14■□□□□ 0.17
PTCH1-222ENST00000551425 CELF2O95319 508 aaKnown RBP16.14■□□□□ 0.17
PTCH1-222ENST00000551425 LARGE2Q8N3Y3 721 aa16.14■□□□□ 0.17
PTCH1-222ENST00000551425 GAS2L2Q8NHY3 880 aa16.14■□□□□ 0.17
PTCH1-222ENST00000551425 ADARB2Q9NS39 739 aaKnown RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms