RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 TSPYL4Q9UJ04 414 aa14.29□□□□□ -0.12
VTI1BP3-201ENST00000550220 ERBB4Q15303 1308 aa14.29□□□□□ -0.12
VTI1BP3-201ENST00000550220 NRXN2Q9P2S2 1712 aa14.29□□□□□ -0.12
VTI1BP3-201ENST00000550220 SRGNP10124 158 aa14.28□□□□□ -0.12
VTI1BP3-201ENST00000550220 GTF2E1P29083 439 aaPredicted RBP14.28□□□□□ -0.12
VTI1BP3-201ENST00000550220 TMPOP42166 694 aaKnown RBP14.28□□□□□ -0.12
VTI1BP3-201ENST00000550220 KIF6Q6ZMV9 814 aa14.28□□□□□ -0.12
VTI1BP3-201ENST00000550220 NYXQ9GZU5 481 aa14.28□□□□□ -0.12
VTI1BP3-201ENST00000550220 KLRG2A4D1S0 409 aaPredicted RBP14.27□□□□□ -0.13
VTI1BP3-201ENST00000550220 NPR1P16066 1061 aa14.27□□□□□ -0.13
VTI1BP3-201ENST00000550220 ARFGEF1Q9Y6D6 1849 aa14.27□□□□□ -0.13
VTI1BP3-201ENST00000550220 DPY19L2Q6NUT2 758 aa14.26□□□□□ -0.13
VTI1BP3-201ENST00000550220 RBM46Q8TBY0 533 aaKnown RBP14.26□□□□□ -0.13
VTI1BP3-201ENST00000550220 RUNDC1Q96C34 613 aa14.26□□□□□ -0.13
VTI1BP3-201ENST00000550220 THUMPD2Q9BTF0 503 aaKnown RBP14.26□□□□□ -0.13
VTI1BP3-201ENST00000550220 NMRK2Q9NPI5 230 aa14.26□□□□□ -0.13
VTI1BP3-201ENST00000550220 RRP7AQ9Y3A4 280 aaKnown RBP14.26□□□□□ -0.13
VTI1BP3-201ENST00000550220 BRCA1P38398 1863 aaKnown RBP14.26□□□□□ -0.13
VTI1BP3-201ENST00000550220 MAP3K15Q6ZN16 1313 aa14.25□□□□□ -0.13
VTI1BP3-201ENST00000550220 LTBP3Q9NS15 1303 aa14.25□□□□□ -0.13
VTI1BP3-201ENST00000550220 C21orf2O43822 256 aa14.25□□□□□ -0.13
VTI1BP3-201ENST00000550220 ALDH1B1P30837 517 aa14.25□□□□□ -0.13
VTI1BP3-201ENST00000550220 RASSF7Q02833 373 aa14.25□□□□□ -0.13
VTI1BP3-201ENST00000550220 CCDC24Q8N4L8 307 aa14.25□□□□□ -0.13
VTI1BP3-201ENST00000550220 NGEFQ8N5V2 710 aa14.25□□□□□ -0.13
VTI1BP3-201ENST00000550220 GLTPD2A6NH11 291 aa14.24□□□□□ -0.13
VTI1BP3-201ENST00000550220 APLP1P51693 650 aa14.24□□□□□ -0.13
VTI1BP3-201ENST00000550220 FSTL1Q12841 308 aa14.24□□□□□ -0.13
VTI1BP3-201ENST00000550220 HLFQ16534 295 aa14.24□□□□□ -0.13
VTI1BP3-201ENST00000550220 PRPF40BQ6NWY9 871 aaKnown RBP14.24□□□□□ -0.13
VTI1BP3-201ENST00000550220 TAOK3Q9H2K8 898 aa14.24□□□□□ -0.13
VTI1BP3-201ENST00000550220 SCN7AQ01118 1682 aa14.23□□□□□ -0.13
VTI1BP3-201ENST00000550220 AFDNP55196 1824 aaKnown RBP14.23□□□□□ -0.13
VTI1BP3-201ENST00000550220 NFKBIEO00221 500 aa14.23□□□□□ -0.13
VTI1BP3-201ENST00000550220 MYL6BP14649 208 aa14.23□□□□□ -0.13
VTI1BP3-201ENST00000550220 VEGFAP15692 232 aaPredicted RBP14.23□□□□□ -0.13
VTI1BP3-201ENST00000550220 ZEB1P37275 1124 aaPredicted RBP14.23□□□□□ -0.13
VTI1BP3-201ENST00000550220 PRKRIP1Q9H875 184 aaPredicted RBP14.23□□□□□ -0.13
VTI1BP3-201ENST00000550220 RRAGCQ9HB90 399 aa14.23□□□□□ -0.13
VTI1BP3-201ENST00000550220 CHL1O00533 1208 aa14.22□□□□□ -0.13
VTI1BP3-201ENST00000550220 ERFEQ4G0M1 354 aa14.22□□□□□ -0.13
VTI1BP3-201ENST00000550220 PARP10Q53GL7 1025 aa14.22□□□□□ -0.13
VTI1BP3-201ENST00000550220 EIF2S2P20042 333 aaKnown RBP14.21□□□□□ -0.13
VTI1BP3-201ENST00000550220 NEUROD2Q15784 382 aa14.21□□□□□ -0.13
VTI1BP3-201ENST00000550220 GRIPAP1Q4V328 841 aa14.21□□□□□ -0.13
VTI1BP3-201ENST00000550220 CCDC93Q567U6 631 aa14.21□□□□□ -0.13
VTI1BP3-201ENST00000550220 GIGYF2Q6Y7W6 1299 aaKnown RBP14.21□□□□□ -0.13
VTI1BP3-201ENST00000550220 PPP1R42Q7Z4L9 355 aa14.21□□□□□ -0.13
VTI1BP3-201ENST00000550220 RTKN2Q8IZC4 609 aa14.21□□□□□ -0.13
VTI1BP3-201ENST00000550220 ZNF219Q9P2Y4 722 aaPredicted RBP14.21□□□□□ -0.13
VTI1BP3-201ENST00000550220 ADAMTS8Q9UP79 889 aa14.21□□□□□ -0.13
VTI1BP3-201ENST00000550220 IBTKQ9P2D0 1353 aaPredicted RBP14.21□□□□□ -0.14
VTI1BP3-201ENST00000550220 FAM177BA6PVY3 158 aa14.2□□□□□ -0.14
VTI1BP3-201ENST00000550220 HOXB7P09629 217 aa14.2□□□□□ -0.14
VTI1BP3-201ENST00000550220 CALD1Q05682 793 aaKnown RBP14.2□□□□□ -0.14
VTI1BP3-201ENST00000550220 HSP90AB3PQ58FF7 597 aa14.2□□□□□ -0.14
VTI1BP3-201ENST00000550220 CC2D2BQ6DHV5 1058 aa14.2□□□□□ -0.14
VTI1BP3-201ENST00000550220 TTLL7Q6ZT98 887 aa14.2□□□□□ -0.14
VTI1BP3-201ENST00000550220 CCDC146Q8IYE0 955 aa14.2□□□□□ -0.14
VTI1BP3-201ENST00000550220 ZNF34Q8IZ26 560 aa14.2□□□□□ -0.14
VTI1BP3-201ENST00000550220 SMC1BQ8NDV3 1235 aa14.2□□□□□ -0.14
VTI1BP3-201ENST00000550220 C7orf43Q8WVR3 580 aa14.2□□□□□ -0.14
VTI1BP3-201ENST00000550220 PRELPP51888 382 aa14.19□□□□□ -0.14
VTI1BP3-201ENST00000550220 PDIA6Q15084 440 aa14.19□□□□□ -0.14
VTI1BP3-201ENST00000550220 CRY2Q49AN0 593 aa14.19□□□□□ -0.14
VTI1BP3-201ENST00000550220 ZBTB3Q9H5J0 574 aa14.19□□□□□ -0.14
VTI1BP3-201ENST00000550220 RPGRQ92834 1020 aaKnown RBP14.18□□□□□ -0.14
VTI1BP3-201ENST00000550220 CFAP44Q96MT7 982 aa14.18□□□□□ -0.14
VTI1BP3-201ENST00000550220 CHMP4AQ9BY43 222 aa14.18□□□□□ -0.14
VTI1BP3-201ENST00000550220 TRIM35Q9UPQ4 493 aa14.18□□□□□ -0.14
VTI1BP3-201ENST00000550220 RNF123Q5XPI4 1314 aa14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 DLEC1Q9Y238 1755 aa14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 GPTP24298 496 aa14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 HOXA10P31260 410 aaPredicted RBP14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 FKBP4Q02790 459 aaKnown RBP eCLIP14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 SUSD4Q5VX71 490 aa14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 LRP10Q7Z4F1 713 aa14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 RBM17Q96I25 401 aaKnown RBP14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 NLRP3Q96P20 1036 aa14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 UTP14AQ9BVJ6 771 aaKnown RBP14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 TMX4Q9H1E5 349 aaPredicted RBP14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 DDX21Q9NR30 783 aaKnown RBP eCLIP14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 LAS1LQ9Y4W2 734 aaKnown RBP14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 BCORQ6W2J9 1755 aa14.17□□□□□ -0.14
VTI1BP3-201ENST00000550220 SLC10A5Q5PT55 438 aa14.16□□□□□ -0.14
VTI1BP3-201ENST00000550220 COPS6Q7L5N1 327 aa14.16□□□□□ -0.14
VTI1BP3-201ENST00000550220 NUTM1Q86Y26 1132 aa14.16□□□□□ -0.14
VTI1BP3-201ENST00000550220 CRAMP1Q96RY5 1269 aa14.16□□□□□ -0.14
VTI1BP3-201ENST00000550220 KDM3BQ7LBC6 1761 aa14.16□□□□□ -0.14
VTI1BP3-201ENST00000550220 RIC1Q4ADV7 1423 aa14.15□□□□□ -0.14
VTI1BP3-201ENST00000550220 IQCA1LA6NCM1 817 aa14.15□□□□□ -0.14
VTI1BP3-201ENST00000550220 PSMD1Q99460 953 aa14.15□□□□□ -0.14
VTI1BP3-201ENST00000550220 DBF4Q9UBU7 674 aaPredicted RBP14.15□□□□□ -0.14
VTI1BP3-201ENST00000550220 DLG5Q8TDM6 1919 aa14.15□□□□□ -0.14
VTI1BP3-201ENST00000550220 UBN2Q6ZU65 1347 aa14.15□□□□□ -0.15
VTI1BP3-201ENST00000550220 ANKRD31Q8N7Z5 1873 aa14.14□□□□□ -0.15
VTI1BP3-201ENST00000550220 NTSR2O95665 410 aa14.14□□□□□ -0.15
VTI1BP3-201ENST00000550220 GNAI1P63096 354 aa14.14□□□□□ -0.15
VTI1BP3-201ENST00000550220 TCIRG1Q13488 830 aa14.14□□□□□ -0.15
VTI1BP3-201ENST00000550220 HDGFL1Q5TGJ6 251 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms