RNA–Protein interactions for RNA: ENST00000550051.5

TRAFD1-207, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene TRAFD1, Length 1,003 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-207ENST00000550051 SRGNP10124 158 aa13.26□□□□□ -0.29
TRAFD1-207ENST00000550051 CEMIPQ8WUJ3 1361 aa13.26□□□□□ -0.29
TRAFD1-207ENST00000550051 COL3A1P02461 1466 aaPredicted RBP13.25□□□□□ -0.29
TRAFD1-207ENST00000550051 U2SURPO15042 1029 aaKnown RBP13.25□□□□□ -0.29
TRAFD1-207ENST00000550051 C1QBPQ07021 282 aaKnown RBP13.25□□□□□ -0.29
TRAFD1-207ENST00000550051 SOGA3Q5TF21 947 aa13.25□□□□□ -0.29
TRAFD1-207ENST00000550051 CLEC4GQ6UXB4 293 aa13.25□□□□□ -0.29
TRAFD1-207ENST00000550051 NPM2Q86SE8 214 aaKnown RBP13.25□□□□□ -0.29
TRAFD1-207ENST00000550051 SLX4Q8IY92 1834 aa13.25□□□□□ -0.29
TRAFD1-207ENST00000550051 SCN7AQ01118 1682 aa13.24□□□□□ -0.29
TRAFD1-207ENST00000550051 BTBD11A6QL63 1104 aa13.24□□□□□ -0.29
TRAFD1-207ENST00000550051 TNS4Q8IZW8 715 aa13.24□□□□□ -0.29
TRAFD1-207ENST00000550051 CCDC24Q8N4L8 307 aa13.24□□□□□ -0.29
TRAFD1-207ENST00000550051 CNBD1Q8NA66 436 aa13.24□□□□□ -0.29
TRAFD1-207ENST00000550051 C7orf43Q8WVR3 580 aa13.24□□□□□ -0.29
TRAFD1-207ENST00000550051 MASTLQ96GX5 879 aa13.24□□□□□ -0.29
TRAFD1-207ENST00000550051 PHACTR3Q96KR7 559 aa13.24□□□□□ -0.29
TRAFD1-207ENST00000550051 ZNF219Q9P2Y4 722 aaPredicted RBP13.24□□□□□ -0.29
TRAFD1-207ENST00000550051 USP16Q9Y5T5 823 aa13.24□□□□□ -0.29
TRAFD1-207ENST00000550051 COL11A2P13942 1736 aaPredicted RBP13.23□□□□□ -0.29
TRAFD1-207ENST00000550051 RGL2O15211 777 aa13.23□□□□□ -0.29
TRAFD1-207ENST00000550051 ST5P78524 1137 aa13.23□□□□□ -0.29
TRAFD1-207ENST00000550051 CHADLQ6NUI6 762 aa13.23□□□□□ -0.29
TRAFD1-207ENST00000550051 DZIP3Q86Y13 1208 aaKnown RBP13.23□□□□□ -0.29
TRAFD1-207ENST00000550051 TAOK3Q9H2K8 898 aa13.23□□□□□ -0.29
TRAFD1-207ENST00000550051 ZNF330Q9Y3S2 320 aaPredicted RBP13.23□□□□□ -0.29
TRAFD1-207ENST00000550051 KLRG2A4D1S0 409 aaPredicted RBP13.22□□□□□ -0.29
TRAFD1-207ENST00000550051 KCNQ3O43525 872 aa13.22□□□□□ -0.29
TRAFD1-207ENST00000550051 DDNO94850 711 aaPredicted RBP13.22□□□□□ -0.29
TRAFD1-207ENST00000550051 HSPA1AP0DMV8 641 aaKnown RBP13.22□□□□□ -0.29
TRAFD1-207ENST00000550051 HSPA1BP0DMV9 641 aaKnown RBP13.22□□□□□ -0.29
TRAFD1-207ENST00000550051 PRPF40BQ6NWY9 871 aaKnown RBP13.22□□□□□ -0.29
TRAFD1-207ENST00000550051 CREBZFQ9NS37 354 aa13.22□□□□□ -0.29
TRAFD1-207ENST00000550051 RSPH6AQ9H0K4 717 aa13.21□□□□□ -0.29
TRAFD1-207ENST00000550051 ARFGEF2Q9Y6D5 1785 aa13.21□□□□□ -0.29
TRAFD1-207ENST00000550051 NPHP1O15259 732 aa13.2□□□□□ -0.3
TRAFD1-207ENST00000550051 SNRPA1P09661 255 aaKnown RBP13.2□□□□□ -0.3
TRAFD1-207ENST00000550051 NPR1P16066 1061 aa13.2□□□□□ -0.3
TRAFD1-207ENST00000550051 PRKAR2BP31323 418 aa13.2□□□□□ -0.3
TRAFD1-207ENST00000550051 TPTE2Q6XPS3 522 aa13.2□□□□□ -0.3
TRAFD1-207ENST00000550051 L3MBTL3Q96JM7 780 aaPredicted RBP13.2□□□□□ -0.3
TRAFD1-207ENST00000550051 ZNF652Q9Y2D9 606 aa13.2□□□□□ -0.3
TRAFD1-207ENST00000550051 SCN4AP35499 1836 aa13.2□□□□□ -0.3
TRAFD1-207ENST00000550051 BCORQ6W2J9 1755 aa13.2□□□□□ -0.3
TRAFD1-207ENST00000550051 CACNA1SQ13698 1873 aa13.19□□□□□ -0.3
TRAFD1-207ENST00000550051 IQCA1LA6NCM1 817 aa13.19□□□□□ -0.3
TRAFD1-207ENST00000550051 HTATSF1O43719 755 aaKnown RBP13.19□□□□□ -0.3
TRAFD1-207ENST00000550051 NBPF5PQ86XG9 351 aaPredicted RBP13.19□□□□□ -0.3
TRAFD1-207ENST00000550051 CFAP53Q96M91 514 aa13.19□□□□□ -0.3
TRAFD1-207ENST00000550051 NUDCQ9Y266 331 aa13.19□□□□□ -0.3
TRAFD1-207ENST00000550051 POTEIP0CG38 1075 aa13.18□□□□□ -0.3
TRAFD1-207ENST00000550051 POTEJP0CG39 1038 aa13.18□□□□□ -0.3
TRAFD1-207ENST00000550051 LDHDQ86WU2 507 aa13.18□□□□□ -0.3
TRAFD1-207ENST00000550051 TAF1DQ9H5J8 278 aaPredicted RBP13.18□□□□□ -0.3
TRAFD1-207ENST00000550051 PASKQ96RG2 1323 aa13.17□□□□□ -0.3
TRAFD1-207ENST00000550051 PRAMEF22A3QJZ6 481 aa13.17□□□□□ -0.3
TRAFD1-207ENST00000550051 NBPF26B4DH59 902 aa13.17□□□□□ -0.3
TRAFD1-207ENST00000550051 ITGBL1O95965 494 aaPredicted RBP13.17□□□□□ -0.3
TRAFD1-207ENST00000550051 FKBP4Q02790 459 aaKnown RBP eCLIP13.17□□□□□ -0.3
TRAFD1-207ENST00000550051 CCDC93Q567U6 631 aa13.17□□□□□ -0.3
TRAFD1-207ENST00000550051 NBPF10Q6P3W6 841 aaKnown RBP13.17□□□□□ -0.3
TRAFD1-207ENST00000550051 RTKN2Q8IZC4 609 aa13.17□□□□□ -0.3
TRAFD1-207ENST00000550051 NBPF15Q8N660 670 aa13.17□□□□□ -0.3
TRAFD1-207ENST00000550051 RTF1Q92541 710 aaKnown RBP13.17□□□□□ -0.3
TRAFD1-207ENST00000550051 CAPN15O75808 1086 aa13.16□□□□□ -0.3
TRAFD1-207ENST00000550051 ALDH1B1P30837 517 aa13.16□□□□□ -0.3
TRAFD1-207ENST00000550051 PIP4K2AP48426 406 aaPredicted RBP13.16□□□□□ -0.3
TRAFD1-207ENST00000550051 CNGB1Q14028 1251 aaPredicted RBP13.16□□□□□ -0.3
TRAFD1-207ENST00000550051 MKRN1Q9UHC7 482 aaKnown RBP13.16□□□□□ -0.3
TRAFD1-207ENST00000550051 NIP7Q9Y221 180 aaKnown RBP eCLIP13.16□□□□□ -0.3
TRAFD1-207ENST00000550051 TAF7Q15545 349 aaPredicted RBP13.15□□□□□ -0.3
TRAFD1-207ENST00000550051 MCM10Q7L590 875 aa13.15□□□□□ -0.3
TRAFD1-207ENST00000550051 FZD9O00144 591 aa13.14□□□□□ -0.31
TRAFD1-207ENST00000550051 U2AF1L5P0DN76 240 aaPredicted RBP13.14□□□□□ -0.31
TRAFD1-207ENST00000550051 U2AF1Q01081 240 aaKnown RBP eCLIP13.14□□□□□ -0.31
TRAFD1-207ENST00000550051 CNTNAP1P78357 1384 aa13.14□□□□□ -0.31
TRAFD1-207ENST00000550051 TMEM88BA6NKF7 163 aa13.13□□□□□ -0.31
TRAFD1-207ENST00000550051 ERVV-1B6SEH8 477 aa13.13□□□□□ -0.31
TRAFD1-207ENST00000550051 PPP2R1AP30153 589 aa13.13□□□□□ -0.31
TRAFD1-207ENST00000550051 HLFQ16534 295 aa13.13□□□□□ -0.31
TRAFD1-207ENST00000550051 PNMA8AQ86V59 439 aaPredicted RBP13.13□□□□□ -0.31
TRAFD1-207ENST00000550051 SYNE4Q8N205 404 aa13.13□□□□□ -0.31
TRAFD1-207ENST00000550051 PRDM10Q9NQV6 1147 aa13.13□□□□□ -0.31
TRAFD1-207ENST00000550051 ZNF277Q9NRM2 450 aaPredicted RBP13.13□□□□□ -0.31
TRAFD1-207ENST00000550051 HACL1Q9UJ83 578 aa13.13□□□□□ -0.31
TRAFD1-207ENST00000550051 EPHX2P34913 555 aa13.12□□□□□ -0.31
TRAFD1-207ENST00000550051 IARSP41252 1262 aaKnown RBP13.12□□□□□ -0.31
TRAFD1-207ENST00000550051 DCTN1Q14203 1278 aa13.12□□□□□ -0.31
TRAFD1-207ENST00000550051 CRY2Q49AN0 593 aa13.12□□□□□ -0.31
TRAFD1-207ENST00000550051 CC2D2BQ6DHV5 1058 aa13.12□□□□□ -0.31
TRAFD1-207ENST00000550051 PSMD1Q99460 953 aa13.12□□□□□ -0.31
TRAFD1-207ENST00000550051 ZNF541Q9H0D2 1346 aa13.12□□□□□ -0.31
TRAFD1-207ENST00000550051 FOXN1O15353 648 aa13.11□□□□□ -0.31
TRAFD1-207ENST00000550051 GTF2E1P29083 439 aaPredicted RBP13.11□□□□□ -0.31
TRAFD1-207ENST00000550051 HOXA10P31260 410 aaPredicted RBP13.11□□□□□ -0.31
TRAFD1-207ENST00000550051 GRIPAP1Q4V328 841 aa13.11□□□□□ -0.31
TRAFD1-207ENST00000550051 OLFM4Q6UX06 510 aa13.11□□□□□ -0.31
TRAFD1-207ENST00000550051 GPC2Q8N158 579 aa13.11□□□□□ -0.31
TRAFD1-207ENST00000550051 NYXQ9GZU5 481 aa13.11□□□□□ -0.31
TRAFD1-207ENST00000550051 ADAMTSL1Q8N6G6 1762 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms