RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 USPL1Q5W0Q7 1092 aa27.11■■□□□ 1.93
VPS29-206ENST00000549578 ZBTB3Q9H5J0 574 aa27.11■■□□□ 1.93
VPS29-206ENST00000549578 CASZ1Q86V15 1759 aa27.1■■□□□ 1.93
VPS29-206ENST00000549578 SCN7AQ01118 1682 aa27.1■■□□□ 1.93
VPS29-206ENST00000549578 BCORQ6W2J9 1755 aa27.1■■□□□ 1.93
VPS29-206ENST00000549578 RCAN3Q9UKA8 241 aa27.1■■□□□ 1.93
VPS29-206ENST00000549578 MAP3K15Q6ZN16 1313 aa27.1■■□□□ 1.93
VPS29-206ENST00000549578 FKBP5Q13451 457 aaPredicted RBP27.07■■□□□ 1.92
VPS29-206ENST00000549578 BCL2L12Q9HB09 334 aa27.07■■□□□ 1.92
VPS29-206ENST00000549578 GYS1P13807 737 aa27.06■■□□□ 1.92
VPS29-206ENST00000549578 HLFQ16534 295 aa27.06■■□□□ 1.92
VPS29-206ENST00000549578 ANKRD13DQ6ZTN6 518 aa27.06■■□□□ 1.92
VPS29-206ENST00000549578 DDX58O95786 925 aaKnown RBP27.06■■□□□ 1.92
VPS29-206ENST00000549578 BRPF1P55201 1214 aaPredicted RBP27.06■■□□□ 1.92
VPS29-206ENST00000549578 PLBD2Q8NHP8 589 aa27.06■■□□□ 1.92
VPS29-206ENST00000549578 ERVV-1B6SEH8 477 aa27.05■■□□□ 1.92
VPS29-206ENST00000549578 MSL1Q68DK7 614 aa27.05■■□□□ 1.92
VPS29-206ENST00000549578 RIC3Q7Z5B4 369 aa27.05■■□□□ 1.92
VPS29-206ENST00000549578 NOB1Q9ULX3 412 aaKnown RBP27.05■■□□□ 1.92
VPS29-206ENST00000549578 ADCY9O60503 1353 aa27.04■■□□□ 1.92
VPS29-206ENST00000549578 PI4KAP2A4QPH2 592 aa27.04■■□□□ 1.92
VPS29-206ENST00000549578 FKBP8Q14318 412 aa27.04■■□□□ 1.92
VPS29-206ENST00000549578 PI4KAP1Q8N8J0 262 aa27.04■■□□□ 1.92
VPS29-206ENST00000549578 ARFGEF2Q9Y6D5 1785 aa27.04■■□□□ 1.92
VPS29-206ENST00000549578 KIF16BQ96L93 1317 aa27.03■■□□□ 1.92
VPS29-206ENST00000549578 ZBTB7AO95365 584 aa27.03■■□□□ 1.92
VPS29-206ENST00000549578 KSR2Q6VAB6 950 aa27.03■■□□□ 1.92
VPS29-206ENST00000549578 NUP98P52948 1817 aa27.03■■□□□ 1.92
VPS29-206ENST00000549578 GIGYF2Q6Y7W6 1299 aaKnown RBP27.02■■□□□ 1.92
VPS29-206ENST00000549578 FRAT1Q92837 279 aaPredicted RBP27.02■■□□□ 1.92
VPS29-206ENST00000549578 MAP3K2Q9Y2U5 619 aa27.02■■□□□ 1.92
VPS29-206ENST00000549578 PTPRCP08575 1304 aa27.02■■□□□ 1.92
VPS29-206ENST00000549578 SLC16A10Q8TF71 515 aa27.01■■□□□ 1.91
VPS29-206ENST00000549578 ZNF652Q9Y2D9 606 aa27.01■■□□□ 1.91
VPS29-206ENST00000549578 F6X3S4 739 aa27■■□□□ 1.91
VPS29-206ENST00000549578 CLEC4GQ6UXB4 293 aa27■■□□□ 1.91
VPS29-206ENST00000549578 TBC1D9BQ66K14 1250 aa27■■□□□ 1.91
VPS29-206ENST00000549578 BICDL1Q6ZP65 573 aa26.99■■□□□ 1.91
VPS29-206ENST00000549578 NLGN1Q8N2Q7 840 aa26.99■■□□□ 1.91
VPS29-206ENST00000549578 RGL2O15211 777 aa26.98■■□□□ 1.91
VPS29-206ENST00000549578 GPTP24298 496 aa26.97■■□□□ 1.91
VPS29-206ENST00000549578 DNAAF4Q8WXU2 420 aa26.97■■□□□ 1.91
VPS29-206ENST00000549578 MTFR1LQ9H019 292 aa26.97■■□□□ 1.91
VPS29-206ENST00000549578 ATF5Q9Y2D1 282 aaPredicted RBP26.97■■□□□ 1.91
VPS29-206ENST00000549578 ATP10DQ9P241 1426 aa26.97■■□□□ 1.91
VPS29-206ENST00000549578 TCIRG1Q13488 830 aa26.96■■□□□ 1.91
VPS29-206ENST00000549578 NFIXQ14938 502 aa26.96■■□□□ 1.91
VPS29-206ENST00000549578 MYD88Q99836 296 aa26.96■■□□□ 1.91
VPS29-206ENST00000549578 METTL22Q9BUU2 404 aaPredicted RBP26.96■■□□□ 1.91
VPS29-206ENST00000549578 NIP7Q9Y221 180 aaKnown RBP eCLIP26.96■■□□□ 1.91
VPS29-206ENST00000549578 ANKRD36CQ5JPF3 1778 aa26.96■■□□□ 1.91
VPS29-206ENST00000549578 TNNQ9UQP3 1299 aa26.95■■□□□ 1.91
VPS29-206ENST00000549578 ATP5J2-PTCD1G3V325 749 aa26.95■■□□□ 1.9
VPS29-206ENST00000549578 IPO8O15397 1037 aaKnown RBP26.95■■□□□ 1.9
VPS29-206ENST00000549578 HSP90AB3PQ58FF7 597 aa26.95■■□□□ 1.9
VPS29-206ENST00000549578 ZKSCAN2Q63HK3 967 aa26.95■■□□□ 1.9
VPS29-206ENST00000549578 ARHGAP45Q92619 1136 aa26.95■■□□□ 1.9
VPS29-206ENST00000549578 API5Q9BZZ5 524 aaKnown RBP26.95■■□□□ 1.9
VPS29-206ENST00000549578 TRIM27P14373 513 aa26.94■■□□□ 1.9
VPS29-206ENST00000549578 TM4SF1P30408 202 aa26.94■■□□□ 1.9
VPS29-206ENST00000549578 SLC4A10Q6U841 1118 aa26.94■■□□□ 1.9
VPS29-206ENST00000549578 ATF7IPQ6VMQ6 1270 aa26.94■■□□□ 1.9
VPS29-206ENST00000549578 ZNF34Q8IZ26 560 aa26.94■■□□□ 1.9
VPS29-206ENST00000549578 UBN2Q6ZU65 1347 aa26.94■■□□□ 1.9
VPS29-206ENST00000549578 MMP10P09238 476 aa26.93■■□□□ 1.9
VPS29-206ENST00000549578 DDR1Q08345 913 aa26.93■■□□□ 1.9
VPS29-206ENST00000549578 PLIN1O60240 522 aa26.92■■□□□ 1.9
VPS29-206ENST00000549578 SETDB2Q96T68 719 aa26.92■■□□□ 1.9
VPS29-206ENST00000549578 ISCA1Q9BUE6 129 aa26.92■■□□□ 1.9
VPS29-206ENST00000549578 COL24A1Q17RW2 1714 aa26.92■■□□□ 1.9
VPS29-206ENST00000549578 NEXNQ0ZGT2 675 aa26.91■■□□□ 1.9
VPS29-206ENST00000549578 CLUAP1Q96AJ1 413 aa26.91■■□□□ 1.9
VPS29-206ENST00000549578 IGKV5-2P06315 115 aa26.9■■□□□ 1.9
VPS29-206ENST00000549578 CWF19L2Q2TBE0 894 aaKnown RBP26.9■■□□□ 1.9
VPS29-206ENST00000549578 CARMIL3Q8ND23 1372 aa26.9■■□□□ 1.9
VPS29-206ENST00000549578 FAM177BA6PVY3 158 aa26.9■■□□□ 1.9
VPS29-206ENST00000549578 POLRMTO00411 1230 aaKnown RBP26.9■■□□□ 1.9
VPS29-206ENST00000549578 BEND3Q5T5X7 828 aa26.9■■□□□ 1.9
VPS29-206ENST00000549578 NLRP10Q86W26 655 aa26.9■■□□□ 1.9
VPS29-206ENST00000549578 PXDNLA1KZ92 1463 aa26.88■■□□□ 1.89
VPS29-206ENST00000549578 AFDNP55196 1824 aaKnown RBP26.88■■□□□ 1.89
VPS29-206ENST00000549578 LINS1Q8NG48 757 aa26.88■■□□□ 1.89
VPS29-206ENST00000549578 ABCC4O15439 1325 aa26.88■■□□□ 1.89
VPS29-206ENST00000549578 NEURL1BA8MQ27 555 aa26.87■■□□□ 1.89
VPS29-206ENST00000549578 PTGER2P43116 358 aa26.87■■□□□ 1.89
VPS29-206ENST00000549578 TRIM28Q13263 835 aaKnown RBP26.87■■□□□ 1.89
VPS29-206ENST00000549578 PARP10Q53GL7 1025 aa26.87■■□□□ 1.89
VPS29-206ENST00000549578 SUSD4Q5VX71 490 aa26.87■■□□□ 1.89
VPS29-206ENST00000549578 SPON1Q9HCB6 807 aa26.87■■□□□ 1.89
VPS29-206ENST00000549578 PARP3Q9Y6F1 533 aa26.87■■□□□ 1.89
VPS29-206ENST00000549578 SERPINB2P05120 415 aa26.86■■□□□ 1.89
VPS29-206ENST00000549578 POLD1P28340 1107 aa26.86■■□□□ 1.89
VPS29-206ENST00000549578 SGIP1Q9BQI5 828 aa26.86■■□□□ 1.89
VPS29-206ENST00000549578 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.85■■□□□ 1.89
VPS29-206ENST00000549578 SRCIN1Q9C0H9 1055 aa26.85■■□□□ 1.89
VPS29-206ENST00000549578 RLBP1P12271 317 aa26.85■■□□□ 1.89
VPS29-206ENST00000549578 RRP1P56182 461 aaKnown RBP26.85■■□□□ 1.89
VPS29-206ENST00000549578 NBPF5PQ86XG9 351 aaPredicted RBP26.85■■□□□ 1.89
VPS29-206ENST00000549578 FTSJ3Q8IY81 847 aaKnown RBP26.85■■□□□ 1.89
VPS29-206ENST00000549578 DZIP1LQ8IYY4 767 aaKnown RBP26.85■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms