RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 PRDM6Q9NQX0 595 aa8.13□□□□□ -1.11
VPS29-205ENST00000548539 COL9A3Q14050 684 aaPredicted RBP8.12□□□□□ -1.11
VPS29-205ENST00000548539 PARP3Q9Y6F1 533 aa8.12□□□□□ -1.11
VPS29-205ENST00000548539 USP3Q9Y6I4 520 aa8.12□□□□□ -1.11
VPS29-205ENST00000548539 TMEM229AB2RXF0 380 aa8.11□□□□□ -1.11
VPS29-205ENST00000548539 C9orf172C9J069 976 aa8.11□□□□□ -1.11
VPS29-205ENST00000548539 LRP8Q14114 963 aa8.11□□□□□ -1.11
VPS29-205ENST00000548539 MICALL1Q8N3F8 863 aa8.11□□□□□ -1.11
VPS29-205ENST00000548539 ZMYND15Q9H091 742 aa8.11□□□□□ -1.11
VPS29-205ENST00000548539 NEUROD4Q9HD90 331 aa8.11□□□□□ -1.11
VPS29-205ENST00000548539 TBC1D2BQ9UPU7 963 aa8.11□□□□□ -1.11
VPS29-205ENST00000548539 ALBP02768 609 aa8.1□□□□□ -1.11
VPS29-205ENST00000548539 H2AFB1P0C5Y9 115 aa8.1□□□□□ -1.11
VPS29-205ENST00000548539 H2AFB2P0C5Z0 115 aa8.1□□□□□ -1.11
VPS29-205ENST00000548539 LRRC69Q6ZNQ3 347 aa8.1□□□□□ -1.11
VPS29-205ENST00000548539 C8orf86Q6ZUL3 223 aa8.1□□□□□ -1.11
VPS29-205ENST00000548539 TNFRSF25Q93038 417 aa8.1□□□□□ -1.11
VPS29-205ENST00000548539 STARD13Q9Y3M8 1113 aa8.1□□□□□ -1.11
VPS29-205ENST00000548539 BTBD11A6QL63 1104 aa8.09□□□□□ -1.11
VPS29-205ENST00000548539 TXLNAP40222 546 aa8.09□□□□□ -1.11
VPS29-205ENST00000548539 NEUROD1Q13562 356 aa8.09□□□□□ -1.11
VPS29-205ENST00000548539 TRAPPC3LQ5T215 181 aa8.09□□□□□ -1.11
VPS29-205ENST00000548539 PLPP7Q8NBV4 271 aa8.09□□□□□ -1.11
VPS29-205ENST00000548539 NID1P14543 1247 aa8.08□□□□□ -1.12
VPS29-205ENST00000548539 BACH1O14867 736 aa8.07□□□□□ -1.12
VPS29-205ENST00000548539 HYAL3O43820 417 aaPredicted RBP8.07□□□□□ -1.12
VPS29-205ENST00000548539 ADH7P40394 386 aa8.07□□□□□ -1.12
VPS29-205ENST00000548539 SFSWAPQ12872 951 aaKnown RBP8.07□□□□□ -1.12
VPS29-205ENST00000548539 FLIIQ13045 1269 aa8.07□□□□□ -1.12
VPS29-205ENST00000548539 SLC30A3Q99726 388 aa8.07□□□□□ -1.12
VPS29-205ENST00000548539 VAC14Q08AM6 782 aa8.06□□□□□ -1.12
VPS29-205ENST00000548539 IRF5Q13568 498 aa8.06□□□□□ -1.12
VPS29-205ENST00000548539 ADGRE1Q14246 886 aa8.06□□□□□ -1.12
VPS29-205ENST00000548539 L3MBTL2Q969R5 705 aa8.06□□□□□ -1.12
VPS29-205ENST00000548539 LILRB5O75023 590 aa8.05□□□□□ -1.12
VPS29-205ENST00000548539 ELNP15502 786 aa8.05□□□□□ -1.12
VPS29-205ENST00000548539 NRG1Q02297 640 aaPredicted RBP8.05□□□□□ -1.12
VPS29-205ENST00000548539 SPEM2Q0P670 501 aa8.05□□□□□ -1.12
VPS29-205ENST00000548539 MBTPS1Q14703 1052 aa8.05□□□□□ -1.12
VPS29-205ENST00000548539 TXNRD3Q86VQ6 643 aa8.05□□□□□ -1.12
VPS29-205ENST00000548539 SCHIP1Q9P0W5 487 aaPredicted RBP8.05□□□□□ -1.12
VPS29-205ENST00000548539 SELPP16109 830 aa8.04□□□□□ -1.12
VPS29-205ENST00000548539 NOS2P35228 1153 aa8.04□□□□□ -1.12
VPS29-205ENST00000548539 TEAD4Q15561 434 aa8.04□□□□□ -1.12
VPS29-205ENST00000548539 C20orf204Q6ZNR8 217 aa8.04□□□□□ -1.12
VPS29-205ENST00000548539 ZDHHC1Q8WTX9 485 aa8.04□□□□□ -1.12
VPS29-205ENST00000548539 ZNF232Q9UNY5 417 aa8.04□□□□□ -1.12
VPS29-205ENST00000548539 GPC6Q9Y625 555 aaPredicted RBP8.04□□□□□ -1.12
VPS29-205ENST00000548539 EML1O00423 815 aa8.03□□□□□ -1.12
VPS29-205ENST00000548539 SEMA3FQ13275 785 aa8.03□□□□□ -1.12
VPS29-205ENST00000548539 MCM6Q14566 821 aa8.03□□□□□ -1.12
VPS29-205ENST00000548539 RAB44Q7Z6P3 723 aaPredicted RBP8.03□□□□□ -1.12
VPS29-205ENST00000548539 TP53INP1Q96A56 240 aa8.03□□□□□ -1.12
VPS29-205ENST00000548539 CLUAP1Q96AJ1 413 aa8.03□□□□□ -1.12
VPS29-205ENST00000548539 LENG1Q96BZ8 264 aaPredicted RBP8.03□□□□□ -1.12
VPS29-205ENST00000548539 GOLGA2P5Q9HBQ8 144 aa8.03□□□□□ -1.12
VPS29-205ENST00000548539 PCDHGA11Q9Y5H2 935 aa8.03□□□□□ -1.12
VPS29-205ENST00000548539 A0A0A0MRY4 1105 aa8.02□□□□□ -1.13
VPS29-205ENST00000548539 UBTFP17480 764 aaKnown RBP8.02□□□□□ -1.13
VPS29-205ENST00000548539 RAC1P63000 192 aa8.02□□□□□ -1.13
VPS29-205ENST00000548539 KRTAP9-9Q9BYP9 154 aa8.02□□□□□ -1.13
VPS29-205ENST00000548539 KRTAP9-4Q9BYQ2 154 aa8.02□□□□□ -1.13
VPS29-205ENST00000548539 PSME1Q06323 249 aa8□□□□□ -1.13
VPS29-205ENST00000548539 SHISA2Q6UWI4 295 aa8□□□□□ -1.13
VPS29-205ENST00000548539 KRTAP19-1Q8IUB9 90 aa8□□□□□ -1.13
VPS29-205ENST00000548539 SERBP1Q8NC51 408 aaKnown RBP eCLIP8□□□□□ -1.13
VPS29-205ENST00000548539 RHPN1Q8TCX5 695 aa8□□□□□ -1.13
VPS29-205ENST00000548539 C7orf43Q8WVR3 580 aa8□□□□□ -1.13
VPS29-205ENST00000548539 CEP63Q96MT8 703 aa8□□□□□ -1.13
VPS29-205ENST00000548539 BRD7Q9NPI1 651 aa8□□□□□ -1.13
VPS29-205ENST00000548539 USP21Q9UK80 565 aa8□□□□□ -1.13
VPS29-205ENST00000548539 SERTM1A2A2V5 107 aa7.99□□□□□ -1.13
VPS29-205ENST00000548539 ARID3CA6NKF2 412 aa7.99□□□□□ -1.13
VPS29-205ENST00000548539 WASHC4Q2M389 1173 aa7.99□□□□□ -1.13
VPS29-205ENST00000548539 EML3Q32P44 896 aa7.99□□□□□ -1.13
VPS29-205ENST00000548539 SLC9A9Q8IVB4 645 aa7.99□□□□□ -1.13
VPS29-205ENST00000548539 ZNF358Q9NW07 568 aa7.99□□□□□ -1.13
VPS29-205ENST00000548539 NOD1Q9Y239 953 aa7.99□□□□□ -1.13
VPS29-205ENST00000548539 TBC1D8BQ0IIM8 1120 aa7.98□□□□□ -1.13
VPS29-205ENST00000548539 TBCELQ5QJ74 424 aa7.98□□□□□ -1.13
VPS29-205ENST00000548539 ARXQ96QS3 562 aa7.98□□□□□ -1.13
VPS29-205ENST00000548539 JPH1Q9HDC5 661 aaPredicted RBP7.98□□□□□ -1.13
VPS29-205ENST00000548539 ANKIB1Q9P2G1 1089 aa7.98□□□□□ -1.13
VPS29-205ENST00000548539 KCNH4Q9UQ05 1017 aa7.98□□□□□ -1.13
VPS29-205ENST00000548539 KRTAP4-8A0A0G2JLE6 195 aa7.97□□□□□ -1.13
VPS29-205ENST00000548539 SOX11P35716 441 aa7.97□□□□□ -1.13
VPS29-205ENST00000548539 GTF2IP78347 998 aa7.97□□□□□ -1.13
VPS29-205ENST00000548539 BHMTQ93088 406 aa7.97□□□□□ -1.13
VPS29-205ENST00000548539 POM121Q96HA1 1249 aa7.97□□□□□ -1.13
VPS29-205ENST00000548539 ARID3AQ99856 593 aa7.97□□□□□ -1.13
VPS29-205ENST00000548539 UBE2OQ9C0C9 1292 aaKnown RBP7.97□□□□□ -1.13
VPS29-205ENST00000548539 IGFLR1Q9H665 355 aa7.97□□□□□ -1.13
VPS29-205ENST00000548539 SFI1A8K8P3 1242 aa7.96□□□□□ -1.14
VPS29-205ENST00000548539 ABL2P42684 1182 aa7.96□□□□□ -1.14
VPS29-205ENST00000548539 KCNQ4P56696 695 aa7.96□□□□□ -1.14
VPS29-205ENST00000548539 TNS4Q8IZW8 715 aa7.96□□□□□ -1.14
VPS29-205ENST00000548539 NUDT8Q8WV74 236 aa7.96□□□□□ -1.14
VPS29-205ENST00000548539 C1orf115Q9H7X2 142 aa7.96□□□□□ -1.14
VPS29-205ENST00000548539 GDPD2Q9HCC8 539 aa7.96□□□□□ -1.14
VPS29-205ENST00000548539 PIK3CDO00329 1044 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms