RNA–Protein interactions for RNA: ENST00000547318.5

LETMD1-209, Transcript of LETM1 domain containing 1, humanhuman

TSL 1 (best)

Gene LETMD1, Length 2,001 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-209ENST00000547318 SH2B1Q9NRF2 756 aaPredicted RBP17.61■□□□□ 0.41
LETMD1-209ENST00000547318 C9orf78Q9NZ63 289 aaPredicted RBP17.61■□□□□ 0.41
LETMD1-209ENST00000547318 NPHP4O75161 1426 aaPredicted RBP17.6■□□□□ 0.41
LETMD1-209ENST00000547318 PRIM1P49642 420 aaKnown RBP17.6■□□□□ 0.41
LETMD1-209ENST00000547318 FAM184AQ8NB25 1140 aa17.6■□□□□ 0.41
LETMD1-209ENST00000547318 TMEM63CQ9P1W3 806 aa17.6■□□□□ 0.41
LETMD1-209ENST00000547318 ERBB4Q15303 1308 aa17.6■□□□□ 0.41
LETMD1-209ENST00000547318 TERF1P54274 439 aa17.6■□□□□ 0.41
LETMD1-209ENST00000547318 RBSNQ9H1K0 784 aa17.6■□□□□ 0.41
LETMD1-209ENST00000547318 DDX21Q9NR30 783 aaKnown RBP eCLIP17.6■□□□□ 0.41
LETMD1-209ENST00000547318 SETD1BQ9UPS6 1966 aaKnown RBP17.6■□□□□ 0.41
LETMD1-209ENST00000547318 MRC1P22897 1456 aa17.6■□□□□ 0.41
LETMD1-209ENST00000547318 PXDNQ92626 1479 aa17.6■□□□□ 0.41
LETMD1-209ENST00000547318 VPS53Q5VIR6 699 aa17.59■□□□□ 0.41
LETMD1-209ENST00000547318 NAP1L5Q96NT1 182 aaPredicted RBP17.59■□□□□ 0.41
LETMD1-209ENST00000547318 SNRKQ9NRH2 765 aa17.59■□□□□ 0.41
LETMD1-209ENST00000547318 MAP3K2Q9Y2U5 619 aa17.59■□□□□ 0.41
LETMD1-209ENST00000547318 IFIT2P09913 472 aaKnown RBP17.59■□□□□ 0.41
LETMD1-209ENST00000547318 UPF3BQ9BZI7 483 aaKnown RBP17.59■□□□□ 0.41
LETMD1-209ENST00000547318 ADAMTSL3P82987 1691 aa17.58■□□□□ 0.4
LETMD1-209ENST00000547318 TPM2P07951 284 aa17.58■□□□□ 0.4
LETMD1-209ENST00000547318 ANKRD24Q8TF21 1146 aa17.58■□□□□ 0.4
LETMD1-209ENST00000547318 NOL7Q9UMY1 257 aaKnown RBP17.58■□□□□ 0.4
LETMD1-209ENST00000547318 UVSSAQ2YD98 709 aa17.57■□□□□ 0.4
LETMD1-209ENST00000547318 MPRIPQ6WCQ1 1025 aa17.57■□□□□ 0.4
LETMD1-209ENST00000547318 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.57■□□□□ 0.4
LETMD1-209ENST00000547318 TSPY26PQ9H489 355 aa17.57■□□□□ 0.4
LETMD1-209ENST00000547318 SCN11AQ9UI33 1791 aa17.57■□□□□ 0.4
LETMD1-209ENST00000547318 COL15A1P39059 1388 aa17.57■□□□□ 0.4
LETMD1-209ENST00000547318 RPAP1Q9BWH6 1393 aaPredicted RBP17.57■□□□□ 0.4
LETMD1-209ENST00000547318 GRM8O00222 908 aa17.57■□□□□ 0.4
LETMD1-209ENST00000547318 ZSCAN22P10073 491 aaPredicted RBP17.57■□□□□ 0.4
LETMD1-209ENST00000547318 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.57■□□□□ 0.4
LETMD1-209ENST00000547318 CCDC39Q9UFE4 941 aa17.57■□□□□ 0.4
LETMD1-209ENST00000547318 ALS2Q96Q42 1657 aa17.56■□□□□ 0.4
LETMD1-209ENST00000547318 KCNQ3O43525 872 aa17.56■□□□□ 0.4
LETMD1-209ENST00000547318 ZKSCAN1P17029 563 aaPredicted RBP17.56■□□□□ 0.4
LETMD1-209ENST00000547318 IL25Q9H293 177 aa17.56■□□□□ 0.4
LETMD1-209ENST00000547318 RFX7Q2KHR2 1363 aa17.56■□□□□ 0.4
LETMD1-209ENST00000547318 ZNF500O60304 480 aaPredicted RBP17.55■□□□□ 0.4
LETMD1-209ENST00000547318 LARP1Q6PKG0 1096 aaKnown RBP17.55■□□□□ 0.4
LETMD1-209ENST00000547318 SMC3Q9UQE7 1217 aa17.55■□□□□ 0.4
LETMD1-209ENST00000547318 SYCE3A1L190 88 aa17.55■□□□□ 0.4
LETMD1-209ENST00000547318 AK2P54819 239 aa17.55■□□□□ 0.4
LETMD1-209ENST00000547318 CWC27Q6UX04 472 aaKnown RBP17.55■□□□□ 0.4
LETMD1-209ENST00000547318 LRRC59Q96AG4 307 aaKnown RBP17.55■□□□□ 0.4
LETMD1-209ENST00000547318 ZSWIM6Q9HCJ5 1215 aa17.55■□□□□ 0.4
LETMD1-209ENST00000547318 PSMA5P28066 241 aa17.54■□□□□ 0.4
LETMD1-209ENST00000547318 G3BP1Q13283 466 aaKnown RBP eCLIP17.54■□□□□ 0.4
LETMD1-209ENST00000547318 ALDH8A1Q9H2A2 487 aaPredicted RBP17.54■□□□□ 0.4
LETMD1-209ENST00000547318 RBM27Q9P2N5 1060 aaKnown RBP17.54■□□□□ 0.4
LETMD1-209ENST00000547318 CYP46A1Q9Y6A2 500 aa17.54■□□□□ 0.4
LETMD1-209ENST00000547318 STX6O43752 255 aa17.54■□□□□ 0.4
LETMD1-209ENST00000547318 UBE2HP62256 183 aa17.54■□□□□ 0.4
LETMD1-209ENST00000547318 NEXNQ0ZGT2 675 aa17.54■□□□□ 0.4
LETMD1-209ENST00000547318 ANKRD1Q15327 319 aa17.54■□□□□ 0.4
LETMD1-209ENST00000547318 CCDC183Q5T5S1 534 aa17.54■□□□□ 0.4
LETMD1-209ENST00000547318 RNF20Q5VTR2 975 aa17.54■□□□□ 0.4
LETMD1-209ENST00000547318 TICAM2Q86XR7 235 aa17.54■□□□□ 0.4
LETMD1-209ENST00000547318 CCDC171Q6TFL3 1326 aa17.53■□□□□ 0.4
LETMD1-209ENST00000547318 OFD1O75665 1012 aa17.53■□□□□ 0.4
LETMD1-209ENST00000547318 RUFY3Q7L099 469 aa17.52■□□□□ 0.4
LETMD1-209ENST00000547318 PDRG1Q9NUG6 133 aa17.52■□□□□ 0.4
LETMD1-209ENST00000547318 ERBB3P21860 1342 aa17.52■□□□□ 0.4
LETMD1-209ENST00000547318 F13A1P00488 732 aa17.52■□□□□ 0.39
LETMD1-209ENST00000547318 CASTP20810 708 aaKnown RBP17.52■□□□□ 0.39
LETMD1-209ENST00000547318 NECTIN1Q15223 517 aa17.52■□□□□ 0.39
LETMD1-209ENST00000547318 NOL8Q76FK4 1167 aaKnown RBP17.52■□□□□ 0.39
LETMD1-209ENST00000547318 USP48Q86UV5 1035 aa17.52■□□□□ 0.39
LETMD1-209ENST00000547318 AACSQ86V21 672 aa17.52■□□□□ 0.39
LETMD1-209ENST00000547318 RASEFQ8IZ41 740 aa17.52■□□□□ 0.39
LETMD1-209ENST00000547318 HMG20BQ9P0W2 317 aa17.52■□□□□ 0.39
LETMD1-209ENST00000547318 JCADQ9P266 1359 aa17.52■□□□□ 0.39
LETMD1-209ENST00000547318 MAP4K4O95819 1239 aaPredicted RBP17.51■□□□□ 0.39
LETMD1-209ENST00000547318 SPG7Q9UQ90 795 aa17.51■□□□□ 0.39
LETMD1-209ENST00000547318 ZKSCAN5Q9Y2L8 839 aa17.51■□□□□ 0.39
LETMD1-209ENST00000547318 MAP4K1Q92918 833 aa17.5■□□□□ 0.39
LETMD1-209ENST00000547318 DCCP43146 1447 aa17.5■□□□□ 0.39
LETMD1-209ENST00000547318 C1orf167Q5SNV9 1468 aa17.5■□□□□ 0.39
LETMD1-209ENST00000547318 C5P01031 1676 aa17.5■□□□□ 0.39
LETMD1-209ENST00000547318 ZBTB7CA1YPR0 619 aa17.5■□□□□ 0.39
LETMD1-209ENST00000547318 PDCP20941 246 aa17.5■□□□□ 0.39
LETMD1-209ENST00000547318 SYT1P21579 422 aa17.5■□□□□ 0.39
LETMD1-209ENST00000547318 RAPGEF4Q8WZA2 1011 aa17.5■□□□□ 0.39
LETMD1-209ENST00000547318 NSFL1CQ9UNZ2 370 aaKnown RBP17.5■□□□□ 0.39
LETMD1-209ENST00000547318 PARP4Q9UKK3 1724 aaKnown RBP17.49■□□□□ 0.39
LETMD1-209ENST00000547318 TSGA10IPQ3SY00 556 aa17.49■□□□□ 0.39
LETMD1-209ENST00000547318 FOXD4L5Q5VV16 416 aaPredicted RBP17.49■□□□□ 0.39
LETMD1-209ENST00000547318 ZNF790Q6PG37 636 aa17.49■□□□□ 0.39
LETMD1-209ENST00000547318 KRT28Q7Z3Y7 464 aa17.49■□□□□ 0.39
LETMD1-209ENST00000547318 FOXD4L4Q8WXT5 416 aaPredicted RBP17.49■□□□□ 0.39
LETMD1-209ENST00000547318 SUCLG2Q96I99 432 aa17.49■□□□□ 0.39
LETMD1-209ENST00000547318 SLC52A2Q9HAB3 445 aa17.49■□□□□ 0.39
LETMD1-209ENST00000547318 NPHP3Q7Z494 1330 aa17.49■□□□□ 0.39
LETMD1-209ENST00000547318 ANXA1P04083 346 aa17.48■□□□□ 0.39
LETMD1-209ENST00000547318 PROSER3Q2NL68 480 aa17.48■□□□□ 0.39
LETMD1-209ENST00000547318 JAKMIP1Q96N16 626 aaKnown RBP17.48■□□□□ 0.39
LETMD1-209ENST00000547318 PKD1L3Q7Z443 1732 aa17.48■□□□□ 0.39
LETMD1-209ENST00000547318 LAMB4A4D0S4 1761 aa17.48■□□□□ 0.39
LETMD1-209ENST00000547318 PDIA6Q15084 440 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms