RNA–Protein interactions for RNA: ENST00000544401.2

PPME1-209, Transcript of protein phosphatase methylesterase 1, human

TSL 4

Gene PPME1, Length 488 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPME1-209	ENST00000544401	CCDC93	Q567U6	631 aa		13.67	□□□□□ -0.22
PPME1-209	ENST00000544401	PRPF40B	Q6NWY9	871 aa	Known RBP	13.67	□□□□□ -0.22
PPME1-209	ENST00000544401	MCM10	Q7L590	875 aa		13.67	□□□□□ -0.22
PPME1-209	ENST00000544401	JMY	Q8N9B5	988 aa		13.67	□□□□□ -0.22
PPME1-209	ENST00000544401	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
PPME1-209	ENST00000544401	USP16	Q9Y5T5	823 aa		13.67	□□□□□ -0.22
PPME1-209	ENST00000544401	COL3A1	P02461	1466 aa	Predicted RBP	13.66	□□□□□ -0.22
PPME1-209	ENST00000544401	ALDH1B1	P30837	517 aa		13.65	□□□□□ -0.22
PPME1-209	ENST00000544401	RTKN2	Q8IZC4	609 aa		13.65	□□□□□ -0.22
PPME1-209	ENST00000544401	BRCA1	P38398	1863 aa	Known RBP	13.65	□□□□□ -0.22
PPME1-209	ENST00000544401	ADAMTS7	Q9UKP4	1686 aa		13.64	□□□□□ -0.23
PPME1-209	ENST00000544401	CHADL	Q6NUI6	762 aa		13.64	□□□□□ -0.23
PPME1-209	ENST00000544401	KIF6	Q6ZMV9	814 aa		13.64	□□□□□ -0.23
PPME1-209	ENST00000544401	NYX	Q9GZU5	481 aa		13.64	□□□□□ -0.23
PPME1-209	ENST00000544401	TMX4	Q9H1E5	349 aa	Predicted RBP	13.64	□□□□□ -0.23
PPME1-209	ENST00000544401	PIP4K2A	P48426	406 aa	Predicted RBP	13.63	□□□□□ -0.23
PPME1-209	ENST00000544401	PRELP	P51888	382 aa		13.63	□□□□□ -0.23
PPME1-209	ENST00000544401	MAPK8IP3	Q9UPT6	1336 aa		13.63	□□□□□ -0.23
PPME1-209	ENST00000544401	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.63	□□□□□ -0.23
PPME1-209	ENST00000544401	FAM177B	A6PVY3	158 aa		13.62	□□□□□ -0.23
PPME1-209	ENST00000544401	DCTN1	Q14203	1278 aa		13.62	□□□□□ -0.23
PPME1-209	ENST00000544401	NRXN2	Q9P2S2	1712 aa		13.61	□□□□□ -0.23
PPME1-209	ENST00000544401	DDN	O94850	711 aa	Predicted RBP	13.61	□□□□□ -0.23
PPME1-209	ENST00000544401	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
PPME1-209	ENST00000544401	GRIPAP1	Q4V328	841 aa		13.61	□□□□□ -0.23
PPME1-209	ENST00000544401	CC2D2B	Q6DHV5	1058 aa		13.61	□□□□□ -0.23
PPME1-209	ENST00000544401	LDHD	Q86WU2	507 aa		13.61	□□□□□ -0.23
PPME1-209	ENST00000544401	TNS4	Q8IZW8	715 aa		13.61	□□□□□ -0.23
PPME1-209	ENST00000544401	NGEF	Q8N5V2	710 aa		13.61	□□□□□ -0.23
PPME1-209	ENST00000544401	RPGR	Q92834	1020 aa	Known RBP	13.61	□□□□□ -0.23
PPME1-209	ENST00000544401	CREBZF	Q9NS37	354 aa		13.61	□□□□□ -0.23
PPME1-209	ENST00000544401	PRAMEF22	A3QJZ6	481 aa		13.6	□□□□□ -0.23
PPME1-209	ENST00000544401	ERVV-1	B6SEH8	477 aa		13.6	□□□□□ -0.23
PPME1-209	ENST00000544401	JDP2	Q8WYK2	163 aa		13.6	□□□□□ -0.23
PPME1-209	ENST00000544401	UBR2	Q8IWV8	1755 aa		13.6	□□□□□ -0.23
PPME1-209	ENST00000544401	KLRG2	A4D1S0	409 aa	Predicted RBP	13.59	□□□□□ -0.23
PPME1-209	ENST00000544401	POTEC	B2RU33	542 aa		13.59	□□□□□ -0.23
PPME1-209	ENST00000544401	NBPF26	B4DH59	902 aa		13.59	□□□□□ -0.23
PPME1-209	ENST00000544401	NBPF10	Q6P3W6	841 aa	Known RBP	13.59	□□□□□ -0.23
PPME1-209	ENST00000544401	PNMA8A	Q86V59	439 aa	Predicted RBP	13.59	□□□□□ -0.23
PPME1-209	ENST00000544401	NBPF15	Q8N660	670 aa		13.59	□□□□□ -0.23
PPME1-209	ENST00000544401	MIS18A	Q9NYP9	233 aa		13.59	□□□□□ -0.23
PPME1-209	ENST00000544401	HACL1	Q9UJ83	578 aa		13.59	□□□□□ -0.23
PPME1-209	ENST00000544401	CLEC11A	Q9Y240	323 aa		13.59	□□□□□ -0.23
PPME1-209	ENST00000544401	RRP7A	Q9Y3A4	280 aa	Known RBP	13.59	□□□□□ -0.23
PPME1-209	ENST00000544401	AFDN	P55196	1824 aa	Known RBP	13.59	□□□□□ -0.23
PPME1-209	ENST00000544401	WDR90	Q96KV7	1748 aa		13.59	□□□□□ -0.23
PPME1-209	ENST00000544401	HSPA1A	P0DMV8	641 aa	Known RBP	13.58	□□□□□ -0.24
PPME1-209	ENST00000544401	HSPA1B	P0DMV9	641 aa	Known RBP	13.58	□□□□□ -0.24
PPME1-209	ENST00000544401	NFE2L2	Q16236	605 aa		13.58	□□□□□ -0.24
PPME1-209	ENST00000544401	EAPP	Q56P03	285 aa	Predicted RBP	13.58	□□□□□ -0.24
PPME1-209	ENST00000544401	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.58	□□□□□ -0.24
PPME1-209	ENST00000544401	C7orf43	Q8WVR3	580 aa		13.58	□□□□□ -0.24
PPME1-209	ENST00000544401	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.58	□□□□□ -0.24
PPME1-209	ENST00000544401	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.58	□□□□□ -0.24
PPME1-209	ENST00000544401	MYL6B	P14649	208 aa		13.57	□□□□□ -0.24
PPME1-209	ENST00000544401	EIF6	P56537	245 aa	Known RBP	13.57	□□□□□ -0.24
PPME1-209	ENST00000544401	SYNE4	Q8N205	404 aa		13.57	□□□□□ -0.24
PPME1-209	ENST00000544401	AIDA	Q96BJ3	306 aa		13.57	□□□□□ -0.24
PPME1-209	ENST00000544401	RBM17	Q96I25	401 aa	Known RBP	13.57	□□□□□ -0.24
PPME1-209	ENST00000544401	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.57	□□□□□ -0.24
PPME1-209	ENST00000544401	MAP3K15	Q6ZN16	1313 aa		13.57	□□□□□ -0.24
PPME1-209	ENST00000544401	SCN7A	Q01118	1682 aa		13.56	□□□□□ -0.24
PPME1-209	ENST00000544401	LMOD1	P29536	600 aa	Predicted RBP	13.56	□□□□□ -0.24
PPME1-209	ENST00000544401	IARS	P41252	1262 aa	Known RBP	13.56	□□□□□ -0.24
PPME1-209	ENST00000544401	HLF	Q16534	295 aa		13.56	□□□□□ -0.24
PPME1-209	ENST00000544401	PPP1R42	Q7Z4L9	355 aa		13.56	□□□□□ -0.24
PPME1-209	ENST00000544401	MKRN1	Q9UHC7	482 aa	Known RBP	13.56	□□□□□ -0.24
PPME1-209	ENST00000544401	SBF1	O95248	1867 aa		13.55	□□□□□ -0.24
PPME1-209	ENST00000544401	TMEM88B	A6NKF7	163 aa		13.55	□□□□□ -0.24
PPME1-209	ENST00000544401	EPHX2	P34913	555 aa		13.55	□□□□□ -0.24
PPME1-209	ENST00000544401	EIF4A1	P60842	406 aa	Known RBP	13.55	□□□□□ -0.24
PPME1-209	ENST00000544401	LMOD3	Q0VAK6	560 aa		13.55	□□□□□ -0.24
PPME1-209	ENST00000544401	PARP10	Q53GL7	1025 aa		13.55	□□□□□ -0.24
PPME1-209	ENST00000544401	PSMD1	Q99460	953 aa		13.55	□□□□□ -0.24
PPME1-209	ENST00000544401	TSPYL4	Q9UJ04	414 aa		13.55	□□□□□ -0.24
PPME1-209	ENST00000544401	ERBB4	Q15303	1308 aa		13.55	□□□□□ -0.24
PPME1-209	ENST00000544401	DLEC1	Q9Y238	1755 aa		13.55	□□□□□ -0.24
PPME1-209	ENST00000544401	CAPN15	O75808	1086 aa		13.54	□□□□□ -0.24
PPME1-209	ENST00000544401	GPT	P24298	496 aa		13.54	□□□□□ -0.24
PPME1-209	ENST00000544401	NUTM1	Q86Y26	1132 aa		13.54	□□□□□ -0.24
PPME1-209	ENST00000544401	GPC2	Q8N158	579 aa		13.54	□□□□□ -0.24
PPME1-209	ENST00000544401	NLRP3	Q96P20	1036 aa		13.54	□□□□□ -0.24
PPME1-209	ENST00000544401	ZBTB3	Q9H5J0	574 aa		13.54	□□□□□ -0.24
PPME1-209	ENST00000544401	CRY2	Q49AN0	593 aa		13.53	□□□□□ -0.24
PPME1-209	ENST00000544401	LARGE2	Q8N3Y3	721 aa		13.53	□□□□□ -0.24
PPME1-209	ENST00000544401	GJA3	Q9Y6H8	435 aa		13.53	□□□□□ -0.24
PPME1-209	ENST00000544401	FZD9	O00144	591 aa		13.52	□□□□□ -0.25
PPME1-209	ENST00000544401	HOXA10	P31260	410 aa	Predicted RBP	13.52	□□□□□ -0.25
PPME1-209	ENST00000544401	HSP90AB3P	Q58FF7	597 aa		13.52	□□□□□ -0.25
PPME1-209	ENST00000544401	NIM1K	Q8IY84	436 aa		13.52	□□□□□ -0.25
PPME1-209	ENST00000544401	SUPT20H	Q8NEM7	779 aa		13.52	□□□□□ -0.25
PPME1-209	ENST00000544401	CRAMP1	Q96RY5	1269 aa		13.52	□□□□□ -0.25
PPME1-209	ENST00000544401	BABAM1	Q9NWV8	329 aa		13.52	□□□□□ -0.25
PPME1-209	ENST00000544401	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.51	□□□□□ -0.25
PPME1-209	ENST00000544401	ZNF541	Q9H0D2	1346 aa		13.51	□□□□□ -0.25
PPME1-209	ENST00000544401	PPEF1	O14829	653 aa	Predicted RBP	13.51	□□□□□ -0.25
PPME1-209	ENST00000544401	POTEI	P0CG38	1075 aa		13.51	□□□□□ -0.25
PPME1-209	ENST00000544401	POTEJ	P0CG39	1038 aa		13.51	□□□□□ -0.25
PPME1-209	ENST00000544401	EIF2S2	P20042	333 aa	Known RBP	13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 16 ms