RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 TERF1P54274 439 aa18.32■□□□□ 0.52
CHFR-223ENST00000544268 C8orf37Q96NL8 207 aa18.32■□□□□ 0.52
CHFR-223ENST00000544268 EXOC5O00471 708 aa18.31■□□□□ 0.52
CHFR-223ENST00000544268 FMNL2Q96PY5 1086 aa18.31■□□□□ 0.52
CHFR-223ENST00000544268 MAP7D2Q96T17 732 aa18.31■□□□□ 0.52
CHFR-223ENST00000544268 SPATA31A5Q5VU36 1347 aa18.31■□□□□ 0.52
CHFR-223ENST00000544268 SPATA31A7Q8IWB4 1347 aa18.31■□□□□ 0.52
CHFR-223ENST00000544268 CCT4P50991 539 aaKnown RBP18.31■□□□□ 0.52
CHFR-223ENST00000544268 CCDC9Q9Y3X0 531 aaKnown RBP18.31■□□□□ 0.52
CHFR-223ENST00000544268 AK9Q5TCS8 1911 aa18.31■□□□□ 0.52
CHFR-223ENST00000544268 SNRPA1P09661 255 aaKnown RBP18.3■□□□□ 0.52
CHFR-223ENST00000544268 PKP1Q13835 747 aa18.3■□□□□ 0.52
CHFR-223ENST00000544268 NAP1L2Q9ULW6 460 aaPredicted RBP18.3■□□□□ 0.52
CHFR-223ENST00000544268 NGLY1Q96IV0 654 aa18.3■□□□□ 0.52
CHFR-223ENST00000544268 THRAP3Q9Y2W1 955 aaKnown RBP18.3■□□□□ 0.52
CHFR-223ENST00000544268 HSPA1LP34931 641 aa18.29■□□□□ 0.52
CHFR-223ENST00000544268 RAB3GAP1Q15042 981 aa18.29■□□□□ 0.52
CHFR-223ENST00000544268 PDIA6Q15084 440 aa18.29■□□□□ 0.52
CHFR-223ENST00000544268 USP16Q9Y5T5 823 aa18.29■□□□□ 0.52
CHFR-223ENST00000544268 LRRFIP2Q9Y608 721 aaKnown RBP18.29■□□□□ 0.52
CHFR-223ENST00000544268 GLI3P10071 1580 aa18.29■□□□□ 0.52
CHFR-223ENST00000544268 PDE1AP54750 535 aa18.29■□□□□ 0.52
CHFR-223ENST00000544268 UNC5CLQ8IV45 518 aa18.29■□□□□ 0.52
CHFR-223ENST00000544268 TNS2Q63HR2 1409 aa18.29■□□□□ 0.52
CHFR-223ENST00000544268 LRP6O75581 1613 aa18.28■□□□□ 0.52
CHFR-223ENST00000544268 OFD1O75665 1012 aa18.28■□□□□ 0.52
CHFR-223ENST00000544268 GNAI2P04899 355 aa18.28■□□□□ 0.52
CHFR-223ENST00000544268 CHAMP1Q96JM3 812 aa18.28■□□□□ 0.52
CHFR-223ENST00000544268 DDX21Q9NR30 783 aaKnown RBP eCLIP18.28■□□□□ 0.52
CHFR-223ENST00000544268 TMOD3Q9NYL9 352 aa18.28■□□□□ 0.52
CHFR-223ENST00000544268 PI4KAP2A4QPH2 592 aa18.28■□□□□ 0.52
CHFR-223ENST00000544268 PI4KAP1Q8N8J0 262 aa18.28■□□□□ 0.52
CHFR-223ENST00000544268 CDCA7Q9BWT1 371 aaPredicted RBP18.28■□□□□ 0.52
CHFR-223ENST00000544268 SPATA31A6Q5VVP1 1343 aa18.27■□□□□ 0.52
CHFR-223ENST00000544268 PAXIP1Q6ZW49 1069 aaPredicted RBP18.27■□□□□ 0.52
CHFR-223ENST00000544268 BCL9LQ86UU0 1499 aa18.27■□□□□ 0.52
CHFR-223ENST00000544268 KAT6BQ8WYB5 2073 aa18.27■□□□□ 0.52
CHFR-223ENST00000544268 UBR2Q8IWV8 1755 aa18.27■□□□□ 0.51
CHFR-223ENST00000544268 PAPPAQ13219 1627 aa18.27■□□□□ 0.51
CHFR-223ENST00000544268 PXDNLA1KZ92 1463 aa18.27■□□□□ 0.51
CHFR-223ENST00000544268 HYPKQ9NX55 129 aa18.27■□□□□ 0.51
CHFR-223ENST00000544268 ADCY9O60503 1353 aa18.26■□□□□ 0.51
CHFR-223ENST00000544268 KCPQ6ZWJ8 1503 aa18.26■□□□□ 0.51
CHFR-223ENST00000544268 PTCD1O75127 700 aaKnown RBP18.26■□□□□ 0.51
CHFR-223ENST00000544268 DDB1Q16531 1140 aa18.26■□□□□ 0.51
CHFR-223ENST00000544268 PIGBQ92521 554 aa18.26■□□□□ 0.51
CHFR-223ENST00000544268 IL1RAPL2Q9NP60 686 aa18.26■□□□□ 0.51
CHFR-223ENST00000544268 ZGPATQ8N5A5 531 aaKnown RBP18.25■□□□□ 0.51
CHFR-223ENST00000544268 USP44Q9H0E7 712 aa18.25■□□□□ 0.51
CHFR-223ENST00000544268 N4BP2Q86UW6 1770 aaPredicted RBP18.25■□□□□ 0.51
CHFR-223ENST00000544268 MYL6BP14649 208 aa18.25■□□□□ 0.51
CHFR-223ENST00000544268 PIP4K2AP48426 406 aaPredicted RBP18.25■□□□□ 0.51
CHFR-223ENST00000544268 DNAAF4Q8WXU2 420 aa18.25■□□□□ 0.51
CHFR-223ENST00000544268 ITGB4P16144 1822 aa18.25■□□□□ 0.51
CHFR-223ENST00000544268 HMMRO75330 724 aa18.24■□□□□ 0.51
CHFR-223ENST00000544268 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.24■□□□□ 0.51
CHFR-223ENST00000544268 BARGINQ6ZT62 677 aa18.24■□□□□ 0.51
CHFR-223ENST00000544268 CCDC173Q0VFZ6 552 aa18.24■□□□□ 0.51
CHFR-223ENST00000544268 AIMP1Q12904 312 aaKnown RBP18.24■□□□□ 0.51
CHFR-223ENST00000544268 ZSCAN30Q86W11 494 aa18.24■□□□□ 0.51
CHFR-223ENST00000544268 GAS2L3Q86XJ1 694 aa18.24■□□□□ 0.51
CHFR-223ENST00000544268 FNBP4Q8N3X1 1017 aaPredicted RBP18.24■□□□□ 0.51
CHFR-223ENST00000544268 BBXQ8WY36 941 aaPredicted RBP18.24■□□□□ 0.51
CHFR-223ENST00000544268 ASAP1Q9ULH1 1129 aa18.24■□□□□ 0.51
CHFR-223ENST00000544268 MAP4K4O95819 1239 aaPredicted RBP18.23■□□□□ 0.51
CHFR-223ENST00000544268 PPP1R9BQ96SB3 815 aa18.23■□□□□ 0.51
CHFR-223ENST00000544268 IL25Q9H293 177 aa18.23■□□□□ 0.51
CHFR-223ENST00000544268 MAP3K2Q9Y2U5 619 aa18.23■□□□□ 0.51
CHFR-223ENST00000544268 SALL3Q9BXA9 1300 aa18.22■□□□□ 0.51
CHFR-223ENST00000544268 VPS72Q15906 364 aa18.22■□□□□ 0.51
CHFR-223ENST00000544268 BEND3Q5T5X7 828 aa18.22■□□□□ 0.51
CHFR-223ENST00000544268 RILPL2Q969X0 211 aa18.22■□□□□ 0.51
CHFR-223ENST00000544268 SRCIN1Q9C0H9 1055 aa18.22■□□□□ 0.51
CHFR-223ENST00000544268 LAMB4A4D0S4 1761 aa18.22■□□□□ 0.51
CHFR-223ENST00000544268 RABEP1Q15276 862 aa18.22■□□□□ 0.51
CHFR-223ENST00000544268 FAM98CQ17RN3 349 aaKnown RBP18.22■□□□□ 0.51
CHFR-223ENST00000544268 SKOR2Q2VWA4 1001 aaPredicted RBP18.22■□□□□ 0.51
CHFR-223ENST00000544268 KSR2Q6VAB6 950 aa18.22■□□□□ 0.51
CHFR-223ENST00000544268 LRP10Q7Z4F1 713 aa18.22■□□□□ 0.51
CHFR-223ENST00000544268 LRRCC1Q9C099 1032 aa18.22■□□□□ 0.51
CHFR-223ENST00000544268 GTF2E1P29083 439 aaPredicted RBP18.21■□□□□ 0.51
CHFR-223ENST00000544268 ATP8B2P98198 1209 aa18.21■□□□□ 0.51
CHFR-223ENST00000544268 NUTM1Q86Y26 1132 aa18.21■□□□□ 0.51
CHFR-223ENST00000544268 SMAP1Q8IYB5 467 aaPredicted RBP18.21■□□□□ 0.51
CHFR-223ENST00000544268 MARCH10Q8NA82 808 aaPredicted RBP18.21■□□□□ 0.51
CHFR-223ENST00000544268 SYTL4Q96C24 671 aaPredicted RBP18.21■□□□□ 0.51
CHFR-223ENST00000544268 ATG3Q9NT62 314 aa18.21■□□□□ 0.51
CHFR-223ENST00000544268 PALD1Q9ULE6 856 aa18.21■□□□□ 0.51
CHFR-223ENST00000544268 BCL9O00512 1426 aa18.21■□□□□ 0.51
CHFR-223ENST00000544268 NBPF7P0C2Y1 421 aaPredicted RBP18.21■□□□□ 0.51
CHFR-223ENST00000544268 NOL8Q76FK4 1167 aaKnown RBP18.21■□□□□ 0.51
CHFR-223ENST00000544268 XAGE3Q8WTP9 111 aa18.21■□□□□ 0.51
CHFR-223ENST00000544268 USP21Q9UK80 565 aa18.21■□□□□ 0.51
CHFR-223ENST00000544268 CIZ1Q9ULV3 898 aaPredicted RBP18.21■□□□□ 0.51
CHFR-223ENST00000544268 TRIM6-TRIM34B2RNG4 842 aa18.2■□□□□ 0.5
CHFR-223ENST00000544268 MX1P20591 662 aa18.2■□□□□ 0.5
CHFR-223ENST00000544268 FOXD4L5Q5VV16 416 aaPredicted RBP18.2■□□□□ 0.5
CHFR-223ENST00000544268 COPS6Q7L5N1 327 aa18.2■□□□□ 0.5
CHFR-223ENST00000544268 FOXD4L4Q8WXT5 416 aaPredicted RBP18.2■□□□□ 0.5
CHFR-223ENST00000544268 ERC2O15083 957 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms