RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 COL11A2P13942 1736 aaPredicted RBP17.3■□□□□ 0.36
RTN3-213ENST00000543552 LMOD3Q0VAK6 560 aa17.29■□□□□ 0.36
RTN3-213ENST00000543552 STYK1Q6J9G0 422 aa17.29■□□□□ 0.36
RTN3-213ENST00000543552 RBM46Q8TBY0 533 aaKnown RBP17.29■□□□□ 0.36
RTN3-213ENST00000543552 MIS18AQ9NYP9 233 aa17.29■□□□□ 0.36
RTN3-213ENST00000543552 NBPF26B4DH59 902 aa17.28■□□□□ 0.36
RTN3-213ENST00000543552 APLP1P51693 650 aa17.28■□□□□ 0.36
RTN3-213ENST00000543552 NBPF10Q6P3W6 841 aaKnown RBP17.28■□□□□ 0.36
RTN3-213ENST00000543552 TPTE2Q6XPS3 522 aa17.28■□□□□ 0.36
RTN3-213ENST00000543552 NBPF15Q8N660 670 aa17.28■□□□□ 0.36
RTN3-213ENST00000543552 MASTLQ96GX5 879 aa17.28■□□□□ 0.36
RTN3-213ENST00000543552 NIP7Q9Y221 180 aaKnown RBP eCLIP17.28■□□□□ 0.36
RTN3-213ENST00000543552 MYBBP1AQ9BQG0 1328 aaKnown RBP17.27■□□□□ 0.36
RTN3-213ENST00000543552 SRGNP10124 158 aa17.27■□□□□ 0.36
RTN3-213ENST00000543552 EIF4A1P60842 406 aaKnown RBP17.27■□□□□ 0.36
RTN3-213ENST00000543552 CCDC24Q8N4L8 307 aa17.27■□□□□ 0.36
RTN3-213ENST00000543552 TIAM2Q8IVF5 1701 aa17.27■□□□□ 0.35
RTN3-213ENST00000543552 NFKBIEO00221 500 aa17.26■□□□□ 0.35
RTN3-213ENST00000543552 C21orf2O43822 256 aa17.26■□□□□ 0.35
RTN3-213ENST00000543552 FSTL1Q12841 308 aa17.26■□□□□ 0.35
RTN3-213ENST00000543552 KIF6Q6ZMV9 814 aa17.26■□□□□ 0.35
RTN3-213ENST00000543552 ERBB4Q15303 1308 aa17.25■□□□□ 0.35
RTN3-213ENST00000543552 LTBP3Q9NS15 1303 aa17.25■□□□□ 0.35
RTN3-213ENST00000543552 ERVV-1B6SEH8 477 aa17.25■□□□□ 0.35
RTN3-213ENST00000543552 DDX10Q13206 875 aaKnown RBP17.25■□□□□ 0.35
RTN3-213ENST00000543552 PRPF40BQ6NWY9 871 aaKnown RBP17.25■□□□□ 0.35
RTN3-213ENST00000543552 THUMPD2Q9BTF0 503 aaKnown RBP17.25■□□□□ 0.35
RTN3-213ENST00000543552 NYXQ9GZU5 481 aa17.25■□□□□ 0.35
RTN3-213ENST00000543552 BABAM1Q9NWV8 329 aa17.25■□□□□ 0.35
RTN3-213ENST00000543552 TSPYL4Q9UJ04 414 aa17.25■□□□□ 0.35
RTN3-213ENST00000543552 ARFGEF2Q9Y6D5 1785 aa17.25■□□□□ 0.35
RTN3-213ENST00000543552 GLTPD2A6NH11 291 aa17.24■□□□□ 0.35
RTN3-213ENST00000543552 NPR1P16066 1061 aa17.24■□□□□ 0.35
RTN3-213ENST00000543552 GTF2E1P29083 439 aaPredicted RBP17.24■□□□□ 0.35
RTN3-213ENST00000543552 RIPK4P57078 832 aa17.24■□□□□ 0.35
RTN3-213ENST00000543552 TAOK3Q9H2K8 898 aa17.24■□□□□ 0.35
RTN3-213ENST00000543552 ZNF219Q9P2Y4 722 aaPredicted RBP17.24■□□□□ 0.35
RTN3-213ENST00000543552 WDR43Q15061 677 aaKnown RBP eCLIP17.23■□□□□ 0.35
RTN3-213ENST00000543552 DPY19L2Q6NUT2 758 aa17.23■□□□□ 0.35
RTN3-213ENST00000543552 RRAGCQ9HB90 399 aa17.23■□□□□ 0.35
RTN3-213ENST00000543552 MAP3K15Q6ZN16 1313 aa17.22■□□□□ 0.35
RTN3-213ENST00000543552 FER1L6Q2WGJ9 1857 aa17.22■□□□□ 0.35
RTN3-213ENST00000543552 VEGFAP15692 232 aaPredicted RBP17.22■□□□□ 0.35
RTN3-213ENST00000543552 ERFEQ4G0M1 354 aa17.22■□□□□ 0.35
RTN3-213ENST00000543552 NGEFQ8N5V2 710 aa17.22■□□□□ 0.35
RTN3-213ENST00000543552 RRP7AQ9Y3A4 280 aaKnown RBP17.22■□□□□ 0.35
RTN3-213ENST00000543552 CACNA1SQ13698 1873 aa17.21■□□□□ 0.35
RTN3-213ENST00000543552 IBTKQ9P2D0 1353 aaPredicted RBP17.21■□□□□ 0.35
RTN3-213ENST00000543552 KLRG2A4D1S0 409 aaPredicted RBP17.21■□□□□ 0.35
RTN3-213ENST00000543552 MYL6BP14649 208 aa17.21■□□□□ 0.35
RTN3-213ENST00000543552 TMPOP42166 694 aaKnown RBP17.21■□□□□ 0.35
RTN3-213ENST00000543552 HLFQ16534 295 aa17.21■□□□□ 0.35
RTN3-213ENST00000543552 CCDC93Q567U6 631 aa17.21■□□□□ 0.35
RTN3-213ENST00000543552 SMC1BQ8NDV3 1235 aa17.21■□□□□ 0.35
RTN3-213ENST00000543552 CCDC88AQ3V6T2 1871 aa17.2■□□□□ 0.34
RTN3-213ENST00000543552 SLX4Q8IY92 1834 aa17.2■□□□□ 0.34
RTN3-213ENST00000543552 FAM177BA6PVY3 158 aa17.2■□□□□ 0.34
RTN3-213ENST00000543552 PRELPP51888 382 aa17.2■□□□□ 0.34
RTN3-213ENST00000543552 DICER1Q9UPY3 1922 aaKnown RBP17.19■□□□□ 0.34
RTN3-213ENST00000543552 ALDH1B1P30837 517 aa17.19■□□□□ 0.34
RTN3-213ENST00000543552 RUNDC1Q96C34 613 aa17.18■□□□□ 0.34
RTN3-213ENST00000543552 ZBTB3Q9H5J0 574 aa17.18■□□□□ 0.34
RTN3-213ENST00000543552 NUP98P52948 1817 aa17.18■□□□□ 0.34
RTN3-213ENST00000543552 RIC1Q4ADV7 1423 aa17.18■□□□□ 0.34
RTN3-213ENST00000543552 TTLL7Q6ZT98 887 aa17.17■□□□□ 0.34
RTN3-213ENST00000543552 RTKN2Q8IZC4 609 aa17.17■□□□□ 0.34
RTN3-213ENST00000543552 WDR90Q96KV7 1748 aa17.17■□□□□ 0.34
RTN3-213ENST00000543552 PARP10Q53GL7 1025 aa17.16■□□□□ 0.34
RTN3-213ENST00000543552 GIGYF2Q6Y7W6 1299 aaKnown RBP17.16■□□□□ 0.34
RTN3-213ENST00000543552 PPP1R42Q7Z4L9 355 aa17.16■□□□□ 0.34
RTN3-213ENST00000543552 C7orf43Q8WVR3 580 aa17.16■□□□□ 0.34
RTN3-213ENST00000543552 RPGRQ92834 1020 aaKnown RBP17.16■□□□□ 0.34
RTN3-213ENST00000543552 EIF2S2P20042 333 aaKnown RBP17.15■□□□□ 0.34
RTN3-213ENST00000543552 GPTP24298 496 aa17.15■□□□□ 0.34
RTN3-213ENST00000543552 FKBP4Q02790 459 aaKnown RBP eCLIP17.15■□□□□ 0.34
RTN3-213ENST00000543552 NEUROD2Q15784 382 aa17.15■□□□□ 0.34
RTN3-213ENST00000543552 CRY2Q49AN0 593 aa17.15■□□□□ 0.34
RTN3-213ENST00000543552 CCDC146Q8IYE0 955 aa17.15■□□□□ 0.34
RTN3-213ENST00000543552 ABCC12Q96J65 1359 aa17.15■□□□□ 0.34
RTN3-213ENST00000543552 CC2D2BQ6DHV5 1058 aa17.14■□□□□ 0.33
RTN3-213ENST00000543552 NUTM1Q86Y26 1132 aa17.14■□□□□ 0.33
RTN3-213ENST00000543552 IQCA1LA6NCM1 817 aa17.13■□□□□ 0.33
RTN3-213ENST00000543552 GRIPAP1Q4V328 841 aa17.13■□□□□ 0.33
RTN3-213ENST00000543552 HSP90AB3PQ58FF7 597 aa17.13■□□□□ 0.33
RTN3-213ENST00000543552 ZNF34Q8IZ26 560 aa17.13■□□□□ 0.33
RTN3-213ENST00000543552 RNF123Q5XPI4 1314 aa17.13■□□□□ 0.33
RTN3-213ENST00000543552 UBN2Q6ZU65 1347 aa17.13■□□□□ 0.33
RTN3-213ENST00000543552 CHL1O00533 1208 aa17.12■□□□□ 0.33
RTN3-213ENST00000543552 RBM17Q96I25 401 aaKnown RBP17.12■□□□□ 0.33
RTN3-213ENST00000543552 PRKRIP1Q9H875 184 aaPredicted RBP17.12■□□□□ 0.33
RTN3-213ENST00000543552 NTSR2O95665 410 aa17.11■□□□□ 0.33
RTN3-213ENST00000543552 HOXB7P09629 217 aa17.11■□□□□ 0.33
RTN3-213ENST00000543552 HOXA10P31260 410 aaPredicted RBP17.11■□□□□ 0.33
RTN3-213ENST00000543552 PDIA6Q15084 440 aa17.11■□□□□ 0.33
RTN3-213ENST00000543552 SUSD4Q5VX71 490 aa17.11■□□□□ 0.33
RTN3-213ENST00000543552 DNAJC5GQ8N7S2 189 aa17.11■□□□□ 0.33
RTN3-213ENST00000543552 TMX4Q9H1E5 349 aaPredicted RBP17.11■□□□□ 0.33
RTN3-213ENST00000543552 ADAMTS8Q9UP79 889 aa17.11■□□□□ 0.33
RTN3-213ENST00000543552 LAS1LQ9Y4W2 734 aaKnown RBP17.11■□□□□ 0.33
RTN3-213ENST00000543552 CALD1Q05682 793 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms