RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SLC4A10	Q6U841	1118 aa		12.92	□□□□□ -0.34
CPSF7-221	ENST00000543545	BICDL1	Q6ZP65	573 aa		12.92	□□□□□ -0.34
CPSF7-221	ENST00000543545	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	12.92	□□□□□ -0.34
CPSF7-221	ENST00000543545	API5	Q9BZZ5	524 aa	Known RBP	12.92	□□□□□ -0.34
CPSF7-221	ENST00000543545	MAP3K2	Q9Y2U5	619 aa		12.92	□□□□□ -0.34
CPSF7-221	ENST00000543545	PTPRC	P08575	1304 aa		12.91	□□□□□ -0.34
CPSF7-221	ENST00000543545	USP42	Q9H9J4	1324 aa	Known RBP	12.91	□□□□□ -0.34
CPSF7-221	ENST00000543545	LY75	O60449	1722 aa		12.91	□□□□□ -0.34
CPSF7-221	ENST00000543545		F6X3S4	739 aa		12.91	□□□□□ -0.34
CPSF7-221	ENST00000543545	BRPF1	P55201	1214 aa	Predicted RBP	12.91	□□□□□ -0.34
CPSF7-221	ENST00000543545	NEXN	Q0ZGT2	675 aa		12.91	□□□□□ -0.34
CPSF7-221	ENST00000543545	HSP90AB3P	Q58FF7	597 aa		12.91	□□□□□ -0.34
CPSF7-221	ENST00000543545	MSL1	Q68DK7	614 aa		12.91	□□□□□ -0.34
CPSF7-221	ENST00000543545	PDGFD	Q9GZP0	370 aa	Predicted RBP	12.91	□□□□□ -0.34
CPSF7-221	ENST00000543545	C4B	P0C0L5	1744 aa		12.91	□□□□□ -0.34
CPSF7-221	ENST00000543545	ZBTB7A	O95365	584 aa		12.9	□□□□□ -0.34
CPSF7-221	ENST00000543545	FKBP8	Q14318	412 aa		12.9	□□□□□ -0.34
CPSF7-221	ENST00000543545	CLEC4G	Q6UXB4	293 aa		12.9	□□□□□ -0.34
CPSF7-221	ENST00000543545	GIGYF2	Q6Y7W6	1299 aa	Known RBP	12.9	□□□□□ -0.34
CPSF7-221	ENST00000543545	NLGN1	Q8N2Q7	840 aa		12.9	□□□□□ -0.34
CPSF7-221	ENST00000543545	DNAAF4	Q8WXU2	420 aa		12.9	□□□□□ -0.34
CPSF7-221	ENST00000543545	MYD88	Q99836	296 aa		12.9	□□□□□ -0.34
CPSF7-221	ENST00000543545	TJP1	Q07157	1748 aa		12.9	□□□□□ -0.34
CPSF7-221	ENST00000543545	C5	P01031	1676 aa		12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	ATP5J2-PTCD1	G3V325	749 aa		12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	PLIN1	O60240	522 aa		12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	GYS1	P13807	737 aa		12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	GPT	P24298	496 aa		12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	TCIRG1	Q13488	830 aa		12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	FTSJ3	Q8IY81	847 aa	Known RBP	12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	SLC16A10	Q8TF71	515 aa		12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	ARHGAP45	Q92619	1136 aa		12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	CLUAP1	Q96AJ1	413 aa		12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	SETDB2	Q96T68	719 aa		12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	METTL22	Q9BUU2	404 aa	Predicted RBP	12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	BCL2L12	Q9HB09	334 aa		12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	NIP7	Q9Y221	180 aa	Known RBP eCLIP	12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	RGPD3	A6NKT7	1758 aa	Predicted RBP	12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	RGPD4	Q7Z3J3	1758 aa		12.89	□□□□□ -0.35
CPSF7-221	ENST00000543545	FAM177B	A6PVY3	158 aa		12.88	□□□□□ -0.35
CPSF7-221	ENST00000543545	NPHP1	O15259	732 aa		12.88	□□□□□ -0.35
CPSF7-221	ENST00000543545	TBC1D9B	Q66K14	1250 aa		12.88	□□□□□ -0.35
CPSF7-221	ENST00000543545	ATF7IP	Q6VMQ6	1270 aa		12.88	□□□□□ -0.35
CPSF7-221	ENST00000543545	SUPT16H	Q9Y5B9	1047 aa	Known RBP	12.88	□□□□□ -0.35
CPSF7-221	ENST00000543545	ZNF831	Q5JPB2	1677 aa		12.88	□□□□□ -0.35
CPSF7-221	ENST00000543545	MS4A1	P11836	297 aa		12.87	□□□□□ -0.35
CPSF7-221	ENST00000543545	TRIM27	P14373	513 aa		12.87	□□□□□ -0.35
CPSF7-221	ENST00000543545	NFIX	Q14938	502 aa		12.87	□□□□□ -0.35
CPSF7-221	ENST00000543545	ADCY9	O60503	1353 aa		12.86	□□□□□ -0.35
CPSF7-221	ENST00000543545	RGL2	O15211	777 aa		12.86	□□□□□ -0.35
CPSF7-221	ENST00000543545	MMP10	P09238	476 aa		12.86	□□□□□ -0.35
CPSF7-221	ENST00000543545	POLD1	P28340	1107 aa		12.86	□□□□□ -0.35
CPSF7-221	ENST00000543545	GTF2E1	P29083	439 aa	Predicted RBP	12.86	□□□□□ -0.35
CPSF7-221	ENST00000543545	DZIP1L	Q8IYY4	767 aa	Known RBP	12.86	□□□□□ -0.35
CPSF7-221	ENST00000543545	SRCIN1	Q9C0H9	1055 aa		12.86	□□□□□ -0.35
CPSF7-221	ENST00000543545	MTFR1L	Q9H019	292 aa		12.86	□□□□□ -0.35
CPSF7-221	ENST00000543545	PARP3	Q9Y6F1	533 aa		12.86	□□□□□ -0.35
CPSF7-221	ENST00000543545	CCT4	P50991	539 aa	Known RBP	12.85	□□□□□ -0.35
CPSF7-221	ENST00000543545	RRP1	P56182	461 aa	Known RBP	12.85	□□□□□ -0.35
CPSF7-221	ENST00000543545	CWF19L2	Q2TBE0	894 aa	Known RBP	12.85	□□□□□ -0.35
CPSF7-221	ENST00000543545	PARP10	Q53GL7	1025 aa		12.85	□□□□□ -0.35
CPSF7-221	ENST00000543545	BEND3	Q5T5X7	828 aa		12.85	□□□□□ -0.35
CPSF7-221	ENST00000543545	NBPF5P	Q86XG9	351 aa	Predicted RBP	12.85	□□□□□ -0.35
CPSF7-221	ENST00000543545	ZNF34	Q8IZ26	560 aa		12.85	□□□□□ -0.35
CPSF7-221	ENST00000543545	LINS1	Q8NG48	757 aa		12.85	□□□□□ -0.35
CPSF7-221	ENST00000543545	CWC25	Q9NXE8	425 aa	Predicted RBP	12.85	□□□□□ -0.35
CPSF7-221	ENST00000543545	TNN	Q9UQP3	1299 aa		12.85	□□□□□ -0.35
CPSF7-221	ENST00000543545	MYH14	Q7Z406	1995 aa	Known RBP	12.85	□□□□□ -0.35
CPSF7-221	ENST00000543545	CIC	Q96RK0	1608 aa	Predicted RBP	12.84	□□□□□ -0.35
CPSF7-221	ENST00000543545	RREB1	Q92766	1687 aa		12.84	□□□□□ -0.35
CPSF7-221	ENST00000543545	SERPINB2	P05120	415 aa		12.84	□□□□□ -0.35
CPSF7-221	ENST00000543545	TM4SF1	P30408	202 aa		12.84	□□□□□ -0.35
CPSF7-221	ENST00000543545	PPP1R42	Q7Z4L9	355 aa		12.84	□□□□□ -0.35
CPSF7-221	ENST00000543545	NLRP10	Q86W26	655 aa		12.84	□□□□□ -0.35
CPSF7-221	ENST00000543545	PANK1	Q8TE04	598 aa		12.84	□□□□□ -0.35
CPSF7-221	ENST00000543545	ISCA1	Q9BUE6	129 aa		12.84	□□□□□ -0.35
CPSF7-221	ENST00000543545	UTP14A	Q9BVJ6	771 aa	Known RBP	12.84	□□□□□ -0.35
CPSF7-221	ENST00000543545	TRMT112	Q9UI30	125 aa	Known RBP	12.84	□□□□□ -0.35
CPSF7-221	ENST00000543545	NUP188	Q5SRE5	1749 aa		12.84	□□□□□ -0.35
CPSF7-221	ENST00000543545	LAMB4	A4D0S4	1761 aa		12.84	□□□□□ -0.35
CPSF7-221	ENST00000543545	COL5A3	P25940	1745 aa	Predicted RBP	12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	NEURL1B	A8MQ27	555 aa		12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	ALDH1L1	O75891	902 aa		12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	IGKV5-2	P06315	115 aa		12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	TRIM28	Q13263	835 aa	Known RBP	12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	RTL5	Q5HYW3	569 aa	Predicted RBP	12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	SUSD4	Q5VX71	490 aa		12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	TPTE2	Q6XPS3	522 aa		12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	ITPRIP	Q8IWB1	547 aa		12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	CCDC191	Q8NCU4	936 aa		12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	NYX	Q9GZU5	481 aa		12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	SPON1	Q9HCB6	807 aa		12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	C9orf78	Q9NZ63	289 aa	Predicted RBP	12.83	□□□□□ -0.36
CPSF7-221	ENST00000543545	DDR1	Q08345	913 aa		12.82	□□□□□ -0.36
CPSF7-221	ENST00000543545	GCKR	Q14397	625 aa		12.82	□□□□□ -0.36
CPSF7-221	ENST00000543545	PDE3A	Q14432	1141 aa		12.82	□□□□□ -0.36
CPSF7-221	ENST00000543545	TMEM57	Q8N5G2	664 aa		12.82	□□□□□ -0.36
CPSF7-221	ENST00000543545	JARID2	Q92833	1246 aa	Predicted RBP	12.82	□□□□□ -0.36
CPSF7-221	ENST00000543545	TAF1L	Q8IZX4	1826 aa		12.82	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms